>input_sequence_73243
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---------------------------------------------------------------------ATGGCCGCGAC
GGCATGCGCCTACGGCTACGACGGCGGCCTGGTGCCGCCG---CCGCCGCAGGCGATGGACGCGTTCGACGACAGCGCCC
GAGGCCGCCGCCACTGTCCCATCATCCACGACCACTATTCCATCATCAACGGCCTCGTCATGCCTCCACCTCCT------
------CCTCCTCCGCCGCCGCCGCCGCCACCACCTTTCCATCTCCCTTCGG---GCGCCAGCTCCAAGGCGGCAGCGTC
TCGCCACCCCGGCCTCTGCACCGAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCG
TGGCCGACGA---CGACATTGAAGACTGCAAGAGGCGGCAGCAGG------------ACGACCAGGAGGAGA---CGCTG
ATGCCGGCGAGG------------AAAAGGGTGTTTCCCCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGCA
GTACCTGAGGGCGCAGCGCGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCT
GCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCCCACCCGGAGCCGGAGGAACAT-----------------------C
ACCATCTTGCTGATGATGATGAGGAGGAGGAATGCAACA-ACCAGCAGACTGCAATATAA--------------------
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>chr5D_1_TraesCS5D01G031000
GAAGAATAAACGGTTTTCAAAACTGCTCTTAAACCGCTTAAATTTTGCCAAAATTTTAACTTGGGTCATGATACCGGTGT
CCATGGCTTTCCAACGGTATATTGCAAGCCACATTTGTACAATGTTGACGGAAGTTCAACCTAGCACTGAGAGAAGTTCA
GGTCGAACAACTCAGACAGTAAAATTGCAAAAAACGCAATTTCATCACAACCCGAGAGCAAAATCCGCCAACGAGCGAGA
TTCCTATTAAAAACGGGTATTTAGTTGCTAAAAACGTTTTTAGATTACACTAACATCATATAGAACACAACTAACCAGAA
TAATTCGCGCGGGGAGACACGGTTGCGAAGATAGCCCGAAGGTCGGGTTCGTACAGAGGGAAGTTCAAGCGCGTTATTCA
GGCAGTTGAGGTTGTGATCAGAATATTATTCTGATCCCGTGATCAAAATATTATTGTGATATATATGAGCATGGAGGGTA
TAAGCACTCTGGTCAAAAGCAACGTAGCTACTCTACACCAGATGTTGCTTGCGCCGCTAAAAACGAGGGGCCGCCGGTAT
CATGCCCATACCTACACTTACGTGATGCGGCTACAGATCAATCATCTACGAATGCTGCACGATTCTGCAGCCGAAATACA
TGCAAATGGGAGCCGTTGAGAATGAGACCACACCGACCGATCGATCGGGAACCCATGATGCAGGGGCCGAAGAGCAAGCA
GCAAAGCAGTATCTGTTTCTCGCGGCCCAAAACCGTACGTAGCCGAAGGCGATAGCATTATCATGACGGGCACGGAGCCG
CCCGCCACCGCCCTCCCCTCCCCTCCCCTCCACTCTGCAGCTGGCCACGAGTCCCGACCCCCATATCTTCCCGC----CC
CCTATAATTTACCCACGGACGGGCGGACCCCATCGACCGCGCCAACAGG-----------------CAACGGAGTTAGAG
AAGAGAGTTTGAGTTCCAGTGTTCCACC--------TCACCTCACCACCACGTACGCGCGAGCGCGCGCATGGCCGCGAC
GGCATGCGCCTACGGCTACGACGGCGGCCTGGTGCCGCCG---CCGCCGCAGGCGATGGACGCGTTCGACGACAGCGCCC
GAGGCCGCCGCCACTGTCCCATCATCCACGACCACTATTCCATCATCAACGGCCTCGTCATGCCTCCACCTCCT------
------CCTCCTCCGCCGCCGCCGCCGCCACCACCTTTCCATCTCCCTTCGG---GCGCCAGCTCCAAGGCGGCAGCGTC
TCGCCACCCCGGCCTCTGCACCGAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCG
TGGCCGACGA---CGACATTGAAGACTGCAAGAGGCGGCAGCAGG------------ACGACCAGGAGGAGA---CGCTG
ATGCCGGCGAGG------------AAAAGGGTGTTTCCCCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGCA
GTACCTGAGGGCGCAGCGCGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCT
GCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCCCACCCGGAGCCGGAGGAACAT-----------------------C
ACCATCTTGCTGATGATGATGAGGAGGAGGAATGCAACA-ACCAGCAGACTGCAATATAACAGTCAAAAGAGAAGAACCA
-----ACACAACAGGGATTT---AGTTTCTTGGTTTAATAAGTTT-------TGAGTTATTATCGTCAAAGAGTCCTAAG
AGTG-----------------TCCTTCC------AAAGAGATGTAAATATCGCAACAAAATTGGTCAGTTTTTGCATC--
-CATCGTCGATCTACTGCTACTTCCTCTTCTGTCTGTCCAAG-----AAGAAGCAGATGCACGGGTCAAGGATTCAGTTA
CAAGAATCAGCAAGAGAAAGACGCGTTTGTCCTCGACATAGTCGCAATGATGCTCCCCAGCTAAGGATGAGCGTGT----
-GTACAGGCTGCAAAGCACTC----TAAGCTCACAAGAACCCTGCATCG----ACTTGGTTTTTGGTGATGAAAAAGGAG
CACCC---GGCATGTGACAGTTGGTTGATAGGTCTGCATCACAGCCAAAGCAAATGGTATCTTG-----GGGGGTCAAAG
ATGCTGATTCCGCCAATTATGATCCACTACTTCATTGTC----AGTAACTAAAATCAGTAACTGTATGAGTATAATC-AA
AATGTTTCAACAACTGTGAAGCAGTGATGCATTATTATGCTTCATGTTCAAACATTTTTGTTTCTGGTCACATCG-----
----TTAC-----------------ATGCTATATTGGTGGAAAACCACCAAGCTGCAAACACAGAGATACCTCAACATTT
GGTGCAGCAGATGTATTATTCCT---------------GGACCCTCTGTTTTCCCGGTATTG-----TGGACCTCATGTC
CTTCTCATAGAAGTGGGACCTAG---GATGATGA---------------CGTCAGTAGCAC-TTTGTATAGATCAGGACG
CATGTCCCTGAATATACCCCAACAGCACGCTGTATATATCAGGAATTGATCTCGTCCAAGTCGAACTCTGCTGCAACCAC
CTCCTCGTCTTTGTCATTTGAAAGCTTGACGATTTCTTCAGTTGGCCCTGCATATGCACATACATAT-------------
---CAATCATGCTTCTATTGTTGCACCTTCCTCTGTAATTTAAGACTACACACTGAAGCTGGATTACCTGCGATGAACGA
ATTCTCGTAGAAC
>chr5A_837
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------------------------------------GCAGCTGGCCACGAGTCCCGGCCCCCATCCCGTATCTTGCCGCC
CCTATAATTCACCCACGGACGGACGGACGGACGGACCACATCGACTTGCAGCAAGTTGCGACGCGCCAACAGAGTCAGAG
AGGAGAGTTTGAGTTCCGGTGTTCCACTTGACGTCTTCACCTCACCACGTACGC-------GCGCGCGCATGGCCGCGAC
GGCATGCGCCCACGGCTACGACGGCGGCCTGGTGCCGCCGGCGCCGGCGCAGGCGATGGGCCCGTTCGACGACGGT----
-----GGCCACCACCGTCCCGTCATCCACGACCACTATCCCATCATCCACGGCCTCGTCATGCCTCCACCTCCT------
------CCTCC---GCCACCGCCGCCGCCTCCTTCTTTCCATCTCCATTCGGGCCACGCCAGCTCCAAGGCGGCAGCGTC
TCGCCACCCCGGCCTCTGCACCGAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATCG
TGGCCGACGA---CGACATTCAAGACTGCA---------AGCAGG------------GCGACCAGGAGCTAGGGGCGCTG
ATGCCGGCGAGG------------AAAAGGGTGTTCCCGCCGCCGATATCGGTGATCGGCGCGGCCGGGAAGCCGTGGCA
GTACCTGAGGGCGCAGCGCGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCT
GCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCACACCCGGAGCCGGAGCCGGAGCCGGAGCCAGAGGAAGAAAACAAC
ACCATCTAGCTGATGGTGATCAGGAGGAGGAATGCAACAAACCAGCAGACTGCAATATGACAGTCAAAAGAGAAGAGCCA
ACAGAACATAACAGGGTTTTGGT--TTTCTCGGTTTAATAAGTATGAGTTATTA------TATCGTCAAAGAGTTCTAAG
AGTGCCATGGCCATGGCAGTGTCCTTCC------AAAGAGATGTAAATATTGCAACAAAATTGGTCAGTCTTTGCATC--
-CATCGTCGATCTACTGCTACTTCCTCCTCTGTCTTCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGGTA
CAAGAATCAACAAAAGAAAGACGCGTTTGTCCTCGACATAGTCGCAATGATGCTCCACAGCTAAGGATGAGCGTGTATAC
AGTACAGGCTGCAAAGCACTC----TAGGCTCACAAGAACCCTGCCTGCCTGGACTTGGTT-----TGATGAAAAAGGAA
TACTACAACACATGTGACAGTTGGTTGACAGGTTTACATTACAGCCAAAGCAAAGGG------TATCTTGGGGGTCAAAG
ATGCTGATTCTGCCAATTATCATCCACCTCTTCATTTTAAGCAAGTGATTAAAAACACTAACTGTAGGAGTATAGTAAAA
AATGTTTCAACAACTGTGAAGCAGTGATGCATTATTATCCTTCATGTTTCGAACATTTTGTTTCTGGTCACATGG-----
----TTACATTGCAGCATTTTGTTGATGCTATATTGGTGGAAAGCCACCAAGCTGCAAACACAGAGATACCTCAACATTT
GGTGCGGCACATGTATTATTCCT---------------GGACCCTCTGTTTTCCCGGTATTT-----TGGAGCTCATGTC
CTTCTCATACAAGTGGGACCCAG---GATGATGATGTCTTGCCATCCAACGTCAACAGCACTTTTGTATAGATCAGGACG
CATGTCCCTGAATATACCCCAACAGCACGCTGTATAGATCAGGAATTGACCTCGTCCAAGTCGAACTCTGCTGCAAGCAC
CTCCTCGTCTTCGTCATTTGCAAGCTTGATGATCTCTTCAGTTGGCCCTGCATATGCACAGACATAT-------------
---CAATCATGCTTCTATTGTTGCACCTTCCTCTTTAATTTAAGAGTACACACTCAAGCTGGATTACCTGCGATGAACGA
ATTCCCATAGAAC
>chr5B_993
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-------------------------------------------------------------GCGCGCGCATGGC--CGTC
GGCGTGCGCCTACGGCCACGACGGCGGCCGCCG------------GCCACCGTCTATGGGTCCGTTCGACGACGACAACG
ACCGAGGCCGCCACTGTCCCATCTTCCACGACCAGTGTTGCATCATCCACGGCGTCGTCATGCCGCCTCCGCCTCCCCCT
GCCCTGCCTCCTCCGCCGCCGCCGCTCTTCGGC---------CTCCATTCGGGCCGCGCCAGCTCCAAGGCGGCAGCGTC
CCGCCACCCTGGCCTCTGCACCGAGGGCCTCGGCTCCGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGCCGGCATCG
TGGCCGACGACGACGACATTGAAGACTGCAAGACTCAGCAGCAGGGGCACTCCGACGACGACCAAGAGGAGA---CGCCG
GCGCCGGCAAAGGCAAGGGGCGGCAAGAGGGTGTTCCCGCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGCA
GTACCTGAGGGCGCAGCGTGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCCT
GCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCACACCCGGAGCAA---------------------------------
-----------------GATGATGATCAGGAATGCAACA-ACTAGGAGACTGCAAGAGCACTCAAAAGC-----------
-CACAACAGAACAGGGTCCTAAGAGTTTCTTGGTTTAATAAGTTTGTTTGATTGAGTTGTCATCGTCAAAGAGTCCTAAG
AGTGCCATGGCCATGACACTGTCCTTCCTAAACTAAAGAGATGTAAATATCGAAACAAAATTGGTCAGTTTTTGCATCCA
TCATAGTCAATCTACTGCTACTTCCTCTTCAA---TCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGTTA
CAAGAATCGACAAAAGAAAGGCGCGTTTGTCCTCGACATAGTTGCAACGATGCTCCCCAGCTAAGGATGAGCGTGTA---
--TACAGGCTGCAAAGCACTCTAGCTAGGCTCACAAGAACCCTGCCTGC----ACTTGGTT-----TGATGAAAAAGTAA
TACAG---CACATGTGACAGTTGGTTGATAGGTCTACATTACAGCCAAAGCAAATGGTATATATATCTTGGAGGTCAAAG
ATGCTGATTCTGCCAATTATGATCCACCTATTGATTTTC----AGTAACTAAAATCAGTAACTGTAGGGGTACCACCT-A
AATGTTTCAACAAATGCGATGCAT-----CATTATTATATTGCTTTGATCCCTCATCTTCATACTTGTAGGAGCAAATAT
TCTCTTACATGACAGTATTTTATTAATGCTCTATTGGTGGAAAATCACCGAGTCGCAAACACGGGGATACGTTGCAAAGA
GGCAAACCATTTCTTTTGCAGGGGGAAGCTAGACTTACGGACCCTGTGTTTTCCCAGTATAGCATTCTGGAGTTCATGTC
GTCTTCATAAAAGTGGAACCTAGGATGATGATGATGTCTTGCCATCCAACGTCAGTAGCAC-TTTGTATAGATCAGGACG
CCTGTCCCTGAATATCCCCCAGCCGTGTCTCGTA--------GATTTGATCTCGTCCAAGTCAAACTCTGCCACGAGCAC
CTCCTCGTCTTTGTCATTTGCAAGCTTCACGATTTCTCCAGTTGGCCCTGCACGCACACAGTTGTCGTACATAATGATCA
TACCAGTCATGCTTCTATTGTTGCACCTTCCTCTGTAATTTTAAAATACAAACAGAAGCTGGATTACCTGCGATGAATGA
GTTCCCGTAGAA-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-------SS-S-SS-SS------
---------S------------S-----SSSSSSSS-SSSS-S-SSS-S---------------------S----S----
-S---------------S---------S--------------------SSSSSSSSSSSSS-------------------
-----------------------------------------------------------S-S-----------S--SS-S
SSS-SS-----------------------------------------S--------------------------------
-----------------------------S--SS------------S---------------------------------
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---------------------------------SS-S-------------------------------------------
-----------------------------------S--S-----------------------------------------
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----------------------------------S---------------SSSS-S------------------------
-------S-------S------------------------------------------S-----------------S---
--------S-------S-----------------------------------------S---------------------
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-----------------------------------SSSSSSS--------------------------------------
---------S---S------------------------------------------------------------------
---------------------------S-----------------S-SS------------SSSSS-------------S
S--SS---SS-------------------------S---S--------------------S-SS----------------
----------S----------------SS-------S-----------------------------S-------------
--------------------------------------S---------SSS-SSS-------------------------
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---------S-------------------------------------------------------------S--------
---------S----------------------------------------------------------------------
------------------------------------S---------------------------------------S---
--------------------S---------------------------------------S-------------------
---------------------------------------------S----------------------------------
----S--------
>forward_396
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--------------------------------------------------------AGGGAAGTTCAAGCGCGTTA----
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>reverse_2165
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----CGGCATGTGACAGTTGGTTG--------------------------------------------------------
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