>input_sequence_73227
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---------------------------AAGGCTCAACTTTGCACGACCATGCAGTCTGTTTCCCCCACCCCCACG-----
-GCGACGGCTGTGCCTGTGCGCCCATCGTTGCGTGCCGTCCCGCGCTCGCTCGCTTCGGCGGAAAGGCTTGGGATGGGCC
GTGCCGCGACATGCACCACCACA---GCACTCCACGCGCAGTGCGGTGGCTGGGCGGAACCGGTGGAGGCGCGCAAGGAG
GACGGGCCCGTGCCTCAGGAGCGAGTCCGAGG------------------------------GGAGGACGAGGCCATGGC
CGGGGAAGACGAGGGCCGTAGCCCCACGGACTACGGCCGCCGAGCGCACATCTTCGAGGAGAGCTCCCGGGTGTTCCGGG
TCCTCAAGGAGCGCCGTGATGGGGACGGCGGTGCCAAGCCTGGTGCTGCCGCGACGCGCCATGGCTGAAACCAACACGCC
CCATTCCCTCAGAGGACACGTCGCTCCTATAACTTCCTAACATCACGTTTTTCTCATGTACTTACTATGTATCTAGGCCG
ATCAATGTATTGAGGTTTTTTTCACGTTATCGATCTGGTAAAATGAATATCATCTCTGAAAAAGATGGATGCGATCAACT
GTACACGTCGAGGAAGCGGCTCAATAGTACACGGTACACCAAGTGTGCGTTGCCGCCTTAAAAAA---------------
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>chr4A_1_TraesCS4A01G134700
TTTGTGTGTGCTAATAAAATTGTATGCTCTCATATATATA----------------------------------------
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-----AAGATTCATGTCATAAAAACAACTGTATGCTCTCATTTATAAACATATTCAGAGACTATTTCATCTATAAATCTG
TACGTATGTATATGGAATATCTCATTTATAAACATATACAGAGTCTATTACATCTATAATTCTGTACAGGGACTATTTCA
CTTATAAATCTAAAAATCATAGCTCCCATCTATAAAT----------------CTGAACCAAATGATAGCTTTCGTCTAC
AAATATGTATGCTCACATTCAGAAAAGTTCATCTTATTTACAAAAGATTGTGCATCTGGACATCCAAAAATCTGGACCAA
ATGGCCTGTAACTCAATGTAAAATAAACTGAATGGAGAGTGGTGAGGTTGCACATCTGCACGAGCTCACCTTGAGCTTCT
CGAGCGGCGACGGCGGGGCAGAGGAGCAGCGTCGCCGACGACGGGGGTGCCGGCTGCTGTCAGGTGGGGGCGGAATGGGG
CGAGCTTGAAGGAGTCGCGAGCGTCACGAAGAAGGGCTGCTCGAGGACGAGACCTTCTTTGGGGTGGGGTCAAGGTTGCC
GGACGAAGTTGACCGGTGAGGATGCGGTGGCGGGATGTCTGGCGGCTAGGGTTGGACTAGCCGGTGGGGATACGGCAGGA
GGAGAATGGGGATCGAGATGTATCGAGACTTCTCCAGCCTATCTATCGAACAGGTATGTCACTTGGCGGTGGCACATCCT
CGTAATAAAAGTGAACTTCAGCTTTTGCGTTTTCTGGGATCTCCAAACGAGCAGCTCCCGGTTTTTGCACGTAGCCAGGC
CACACATCCCAGAAGCTAGCTTCGTGGAGCCAGGGTGTTCGGGCTAGCTCCGCTCCTGGATTCAGGGAAGCTGGGAGTTG
GGGAGCTGCCGAACAGGCCCTAGTACCAGTACCGATCCTATCCAACCGCCGTCACGTAGAGCGTGTATAGGTCCCCAAGC
TAGCCAAGCCA------CCTAACGTGCAAGGCTCAACTTTGCACGACCATGCAGTCTGTTTCCCCCACCCCCACG-----
-GCGACGGCTGTGCCTGTGCGCCCATCGTTGCGTGCCGTCCCGCGCTCGCTCGCTTCGGCGGAAAGGCTTGGGATGGGCC
GTGCCGCGACATGCACCACCACA---GCACTCCACGCGCAGTGCGGTGGCTGGGCGGAACCGGTGGAGGCGCGCAAGGAG
GACGGGCCCGTGCCTCAGGAGCGAGTCCGAGG------------------------------GGAGGACGAGGCCATGGC
CGGGGAAGACGAGGGCCGTAGCCCCACGGACTACGGCCGCCGAGCGCACATCTTCGAGGAGAGCTCCCGGGTGTTCCGGG
TCCTCAAGGAGCGCCGTGATGGGGACGGCGGTGCCAAGCCTGGTGCTGCCGCGACGCGCCATGGCTGAAACCAACACGCC
CCATTCCCTCAGAGGACACGTCGCTCCTATAACTTCCTAACATCACGTTTTTCTCATGTACTTACTATGTATCTAGGCCG
ATCAATGTATTGAGGTTTTTTTCACGTTATCGATCTGGTAAAATGAATATCATCTCTGAAAAAGATGGATGCGATCAACT
GTACACGTCGAGGAAGCGGCTCAATAGTACACGGTACACCAAGTGTGCGTTGCCGCCTTAAAAAAAAGTGTGCGTTGCCG
GCGCCGCCACACAAGTGTTTGAG----------------TCAAAACTCTCGCTATGCGTGTACCTAGTGTTGCATAATTT
TGCCTTCTTTGTCGGAAAGAAACGAGACACTCCAATAGCATCACCTCTTTGCCTATCAATCCTTTATGAAAAGGAAAAAA
TATCACTGTAATGCAATTTGCCTCTCAATGCTTTATGAAAAGAAAGG---TCACCGTAATGCAATTTGCCTTTCAATGCT
TTATGAAAAGGGAAAAAAATC----AATGCAACATGAGGCTAATTCCAATGCACACCTCATCATGTCCGCATGTGTTTGT
TTGGGGTAAACAAACAAAACAGGCTTTGTCCGCCTGCGTTTGTTTGGGGTAAACAAACAAAGCAGGCTTCCATTTTCTAT
CCGCTTTCAATCCATTCCCGATCCAAGTTCGCGGACGCTACATGGTACTTGTTCATGTCCTCCCTGGCCCGCCCGTCGAG
GATGCAGACATCTCTTTTTCTATTCTCCCATCCCGCCACTCGTGTCCATTGCCACTCTGCAGCTCGGCCGCGCGCTTGCC
CCAACCCTTGTCACAACCTTCGTTCCCTCGACGTTCTAAGCTATCCAACCATGGTCACCTGATTTGCACACGCGGCGGTC
GGGTTCGGAGTGAAGCCAGCCGGACTTAAGCTCGCCCGGCTGCGAGAGGCCGTGCCATGGATTTGCCGGGCACCGGGCCG
GAAGGCCCCGGCAAGGCTGCATGCAAGTACTGAGTCCGCCTCTAGCCGCTTGGATCTACACCGTCGACGGTTAGCCGACA
GATACACGAACGATCGTCGGTCGGGGTTCCGTGCTGGCCCAAAGGCTCGTCGGCTCACCGTTGTCACTCATAAAGTGTGA
CGACTTGTGACGTCCCTGATTTGACCGTACACTAATCATACACGCAAATGTGTACGATCAAGATCAAAGACTCACGGGAA
GATATCACAACACAACTCTAGACACAAATAAAATAGTACAAGCTTTAT
>chr6B_1
TTTGTGTGTGCTAATAAAATTCTATGCTCTCATATATATA----------------------------------------
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-----AAGATTCATGTCATAAAAACAACTGTATGCTCTCATTTATAAACATATTCAGAGACTATTTCATCTATAAATCTG
TACGTATGTATATGGAATATCTCATTTATAAACATATACAGAGTCTATTACATCTATAATTCTGTACAGGGACTATTTCA
CTTATAAATCTAAAAATCATAGCTCCCATCTATAAAT----------------CTGAACCAAATGATAGCTTTCGTCTAC
AAATATGTATGCTCACATTCAGAAAAGTTCATCTTATTTACAAAAGATTGTGCATCTGGACATCCAAAAATCTGGACCAA
ATGGCCTGTAACTCAATGTAAAATAAATTGAATGGAGAGTGGTGAGGTTGCACATCTGCACGAGCTCACCTTGAGCTTCT
CGAGCGGCGACGGCGGGGCAGAGGAGCAGCGTCGCCGACGACGGGGGTGCCGGCTGCTGTCAGGTGGGGGCGGAATGGGG
CGAGCTTGAAGGAGTCGCGAGCGTCACGAAGAAGGGCTGCTCGAGGACACGACCTTCTTTGGGGTGGGGTCGAGGTTGCC
GGACGAAGTTGACCGGTGAGGATGCGGTGGCGGGATGTCTGGCGGCTAGGGTTGGACTAGCCGGTGGGGATACGGCAGGA
GGAGAATGGGGATCGAGATGTATCGAGACTTCTCCAGCCTATCTATCGAACAGGTATGTCACTTGGCGGTGGCACATCCT
CGTAATAAAAGTGAACTCCAGCTTTTGCGTTTTCTGGGATCTCCAAACGAGCAGCTCCCGGTTTTTGCACGTAGCCAGGC
CACACATCCCAGAAGCTAGCTTCTTGGAGCCAGGGTGTTCGGGCCAGCTCCGCTCCTGGATTCAGGGAAGCTGGGAGTTG
GGGAGCTGCCGAACAGGCCCTA----------------------------------------------------------
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>chr3D_1
TTTGAGTGTGCTAATAAAATTGTATGCTCTCATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATAGGGAAAATCCATCCTACCATCCGGTGGTAGTTACCCCACATGTCTCATATACTA
CCATATGGTACTATATATACTTTTGTTATTTTAAATATGTTCATATACTATATCTAAGCTATTTCAAAGCAAGTTACATG
AAAAAATTGCATATGAGCCCATAGTTTTTGTTATATTTGTGAAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGTACGTAAAAAAGAGCATACTCAAAA
AATGGTATATACTACCTAAAAATTAGTATATATACTACCTAATCATTGTTATATACTACATACTACACATACATACTCTC
GGTTTCGACAGATACTACATACAACATACAAAACGCAAGTGGTGGTAACTACCACTGCTTGTAGGAAATATTTGTAACTA
CCTAATCATTGTTATATACTACATACTACACATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATTGTTACTATTCATCACCCAGGGTGCAGAATAAGTTATTCTTCACCCGAGGTAATCTTACGATCATTTCATA
ATTAAATTACGTTTGGAATTCAAATAGTTACATTCTTATTGATTCACTACGTAAAATTTGGCATGAAAAATAAAAATATA
GGGCATAAGACAAGAAATTTTGCAGTTTATGTGTATTTTACACTATGTTTTTACGTTTGTAATTTTATATAACATAAAAT
ATTTTTTACGACGATTGTATTTTTTTACGGTCTCTTTTTACGTCAGAAATAAGACAAAACTTACGAAACGTAAAATTATG
GTGTATTGATGGTAAAATAAAGGGGGTGAAGAATAACTATTCCTCAACCAGGGTGACGAATAGTCAATCCCTATTTATAA
AAATAAAGATTCATGTCATAAAAATAACTGTATGCTCTCATTTATAAACATATACAGAGACTATTTCATCTATAAATCTG
TACGTATGTATATGGAATATCTCATTTATAAACATATACAGAGTCTATTTCATCTATAATTCTGTACAGGGCCTATTTCA
TTTATAAATCTAAAAATCATAGCTCTCATCTATAAATTTGTACATCTATAAATGTGAACCAAATTATATCTCTCGTCTAC
AAATATGTATGCTCTCATTCAGAAAAGTTCATCTCATTTACAAAAGATTGTGCATCTGGACATCCAAAAATCTGGACCAA
ATGGCCTATAACTCAATGTAAAATAAACTGAATGGAGAGTGGTGAGGTTGCACATCTGCACGAGCTCACCTTGAGCTTCT
CGAGCGGCGAGGGCGAGGCAGAGGAGCAGCGTCGCAGACGGCGGGGGTGCCGGCTGCTGTCAGGTGGGGGCGGAATGGGG
CGAGCTTGAAGGAGTCGCGAGCGTGACGAAGAAGGGCTGCTCGAGGACGAGAACTTCTTCGGGGTGGGGTCGAGGTTGCC
GGACGAAGTTGACCGGCGAGGATGCGGCGGCGGGATGTCCGGCGGCTAGGGTTGGACTAGCCGGTGGGGATACGGGAGGA
GGAGAATGGGGATCGAGATGTATCGAGACTTCTCCAGCCTATCTATCGAACATGTATGTCACTTGGCGGTGGCACATCCT
CGTAATAAAAGTGAACTCCAGCTTTTGCGTTTTCTGGGATCTTCAAATGAGCAGCTCCCGGTTTTTGCACATACCCAGGC
CACACATCCCAGAAGCTAGCTTCGTGGAGCCAGGGTGTTCGGGCCAGCTCTGCTCCTGGATTCGGGGAAGCTGGGAGTTG
GGGAGCTGCCGAACAGGCCCTA----------------------------------------------------------
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>chr2A_1
TTTGTGTGTGCTAATAAAATTGTATGCTCTCATATATATA----------------------------------------
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-----AAGATTCATGTCATAAAAATAACGGTATGCTCTCATTTATAAACATATACAAAGACTATTTCATCTATAAATCTG
TACGTATGTATATGCAATATCTCATTTATAAACATATACAGAGTCTATTTCATCTATAATTCTGTACAAGGACTATTTCA
TTTATAAATCTAAAAATTATAGCTCCCATCTATAAATCTGTACATCTATAAATCTGAACCAAATGAT-------------
AAATATGTATGCTCTCATTCAAAAAAGTTCATCTCATTTACAAAAGATTGTGCATCTGGACATCCAAAAATCTGGACCCA
ATGGCCTATAACTCAATGTAAAATAAACTGAATGGAGAGTGGTGAGGTTGCACATCTGCACGAGCTCACCTTGAGCTTCT
CGAGCGGCGACGACGGGGCAGAGGAGGAGCGTCACCGACAGAGGGGGTGTCGGCTGCTGTCAGGTGGGGGCGGAATGCAG
CGAGCTTGAAGGAGTCGCGAGCGTGACGAAGAAGGGCTGCTCGAGGACGAGACCTTCTTCGGGGTGGGGTCGAGGTTGCC
GGACGAAGTTGACCGGTGAGGATGCGGCGGCGGGGTGTCTAGCGGCTAGGGTTGGACTAGCCGGTGGGGATACAGGAGGA
GGAGAATGGGGATCGAGATGTATCGAGACTTCTCCAGCCTATCTGTCGAACATGTATGTCACTTGGCGGTGGCACATCCT
CGTAATAAAAGTGAAGTCCAACTTTTGCGTTTTATGGGATCTCCAAACGAGCAGCTCCCGATTTTTGCACGTACCCAGGC
CACACATCCCAGAAGCTAGCTTCGTGGAGCCAGGGTGTTCGGGCCAGCTCTGCTGCTGGATTCAGGGAAGTTGGGAGTTG
GGGAGCTGTCGAACATGCCCTA----------------------------------------------------------
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>chr4D_908
CCGACAGACA----------------------------------------------------------------------
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------------------CCTAGTACTAGTACCGATCCTATCCAACCGCCGTCACGTAGAGCACGTACAGGTCCCCAAGC
TAGCCAAGCCAAAGCCACCCAACGTGCAAAGTTGAGCTTTGCACGACCATGCAGTTCGTTTCCCCCACCCCCACCCAAAC
CGCGACGGCTGTGCCTGTGCGCCCATCGTTGCGTGCCGTCCCGCGCTCGCTCGCTTCGGCGGAAAGGCTTCGGATGGGCC
GTGCAGCGACATGCA------CCACGGCACTCCGCGCGCAGTGCGGTGGCCGGGCGGAACCGGTGGAGGCGCGCAAGGAC
GGCGAGCCCGTGTCTCACGAGCGGGTCCAAGAGGAGGACGAGGTGGAGCAGCTGGAGTTGCTGGAGGACGAGGCCATGGC
CGGGGAAGACGAGGGCCGTAGCCCCACGGACTACGGCCGCCGCGCGCACATCTTCGAGGAGAGCTCCCGGGTGTTCCGGG
CCCTCAAGGAGCGCCGTGACGGGGACGGCGGTGCCAAGCCCGGTGCTGCCGCGACGCGCCACGGCTGAAACGAACACGCC
CCACTCCCTCAGAGGACACGTCGCTCCCATAACTTCCTAACATCACGTTTTTCTCATGTA-TTACTATGTATCTAGGCCG
ATCACTGTATGGAGGTTTCTTTCACGCCATCGATCTGGTAGAATGAATATCATCTCTGAAAAAGATGGACGCGATCAACT
GTACACGCCGAGGAAGCTGCTCAATAGTACACGGTACACCAAGCGTGAGTT-----------------------------
-----------------------AGATAGCCTACCGAACTCAAAACTCTCGCTATGCGTGTAC--AGTGTTGCATAATTT
TGCCTCCGTC-TCGGAAAGAAACGAGACACTCCAATAGCATCGCCTCTTTGCCTCTCAATGCTTTATGAAAATGAAAAAG
ATCACC-GTAATGCAATTTGCCTCTCAATGCTTTATGAAAAGAAAAAAGATCACCGTAATGCAATTTGCCTCTCAATGCT
TTATGAAAATGAAAAAGATCACCGTAATGCAACATGAGG-----------------------------------------
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>chr4B_1067
CGT-----------------------------------------------------------------------------
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----------------------CCATCGTTGCGTGCCGTCCCGCGTTCGCTCGCTTCGGCGGAAAGGCTTGGGATGAGAC
GTGCCGCGACATGCACCACCACCACGGCACTCCGCGCGCAGTGCGGTGGCCGGACGGAACCCATGCAGGCGCGCAAGGAG
GACGGGCCCGTGCCTCAGGAGCGGGTCCGAGAGGAGGACGAGGTGGAGCAACTGGAGTTGCTGGAGGACGAGGCCATGGC
CGGGGAAGATGAGGGCCGTAGCCCCACGGACTACGGCCGCCGTGTGCACATCTTCCAAGAGAGCTCCCGGGTGTTCCGGG
CCCTCAAGGAGAGCCGTGACAGGGACGGCGGTGCCAAGCCCGGTGCTGCCGCGACGCGCCACGGCTGAAAC-AACACGCC
CCATTCCCTCAGAGGACACGTCGCTCCTATAACTTACTAACATCACGTTTTTCTCATGTACT----ATGTGTCTAGGCAG
ATCACTGTATTGAGGTTTCTTTCACGTCATCGATCTGGTATAATGAATATCATCTCTGAAAAAGATGGACGCGATGAACT
GTACACGTCGAGGAAGCGGCTCAATAGTACACGGTACACCAAGTGTGCGTTGCCG-------------------------
GCGCCGCCACACAAGCGTGAGTCAGATGGCCTACCGAACGCAAAACCCTCGCTATGCGTACACGAGCGTT----------
------CGTC-TCGGAAAGAAACGAGACACTCCAATAGCATCACCTCTTTGCCTCTCAATGCTTTAAGAAAAAGAAAAAG
ATCACC-GTAATGCAATTTGCCTCTCAATGCTTTATGAAAAGAAAAAAGATCACCGTTATGCAATTTGCCTCTCAATGCT
TTATGAAAAAGAAAAGGATCACCGTAATGCAACATGAGG-----------------------------------------
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>SNPs
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-----------------------------------------------------------------------S--------
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-----------------S--------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------S-----------------------------------SS---S------------
-------------------S---------S-S-S-S-------------------SS-----------------S-----
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----------------------S----------S----------------S-----------------------------
-----------------------S-------S------------------------------------------------
------------------------------------------S-------------------------------------
S------------------S--------------------S--------------------S---------S--------
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----S-------------S--------S------------S----------------------------S----------
-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
---------------S--SS-SS----------------------------------------SS---------------
-----S-S-SS-------------------------------------------S-----S-----------S------S
SSSSS-S--------------------------------------SS------------------------S--------
---------S-S----S-SSS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1752
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----------------------------------------------------CCTTCTTTGGGGTGGGGTCA--------
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>reverse_3451
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----------TCACAACCTTCGTTCCCTCG--------------------------------------------------
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