>input_sequence_73226
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-----------------ATGGATCGCGCGCGCCACAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCGCATTCCTCCCC
CGCGCGGCCGCCGGCGACCAGCCCGCCTCGGCGGCCTTCGAGCTCGACGAGGACGACCTCTTCGGCTCGGGGGTCGGATC
TCCCGAGCGGCCGCAGCCGCCGCCGCCGCGCCGGCCCTTGTTCATCTCCTCCTTCCGCACCGCAAACCCTAGCCCCCGCC
TCCGCCGCCCGCCGGGGGGCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTCTCTCGCCGCCCC---------CGTCC
GCCTCGACGTCACCCGCGTCTCCGGCGACGGCCCTTCCGCGCATGATCCCCGCCATCCCCCGCCCGGCGCCGGCGCCGGC
GATGCAAATGCCGCAGTCCGCGCCGGTGAATGTGCCGGTGGCGCGGATGCGGCGACCGCCGTTCGAGGCTTTCGC-----
---GAGTGAACCCGATGAGGAGGACGAGGACGAGGAGATGCTGCCGCCGCACGAGATGGTGGCGCGCTCGCGGGCGCGGG
AGTCGCCCATGACGACCTTCTCGGTGCTGGAAGGCGCTGGGCG-------------------------------------
---------------------------------------------------CACGCTCAAGGGGAGGGACCTCCGCCAGG
TACGCAATGCCGTGTGGCGGAAGACCGGCCTGCTCGATTGA---------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>chr3D_1_TraesCS3D01G367800
TTCTTTTTCTAAGGAGCACAAATCAAATAAACTCTATACTGAATTGAGCCTAGGTCAGATGGTTAGTTTCTTTGTGGTGG
AACTAGCCTACCAGAGTTCAAGTCCTAGACTTGACATTGATGATCATAATTTATAAAACTAGTTTAGTCTTTTTGGTAAT
GT-TCGTTCAGTGGGAGGAGACGTCTCCATTGACTACGGAGGCGCCTATGGTGACTTCGTCAATCAAGATGTGATGTCGG
CTCAGTATTTTGGAGATGTGTGTGTACGTTCATATAAGTGAGTGTTTTGTGTTTGTATGAGCGCACACGTTTGTACTGTG
TTAAAAATAAAACTTAAACTGTAAAGCAGGCCAGGAAGACACATTCGAGCA--TATCTATTACAACTAACTTGTGTGTTT
ATTTTATTTTTCTAGTTCCAACCCCCATGCTCAGGCTTATAAAAGGAACGCTCACTATTGCACCTTGAATCAAATACTCC
TGAGTTTGTGATCAACATCCAAAGTTCGAAATCATACTCGC-CTCAAGTTCGTTTTACGACATATACAAGTTTTACAGTT
TTATAAATTGAAATTTCCAGACTATTTGTTTCGCCGCATTCTCAAAATGTGGGAATAGAAAGAAAAATAAATAAAGTTGA
AGTGACATCGCCTAGTGCATAAGCGTGTCTAAGCGCCTTCTAAGCACTGTCTTTTGCAACAAACGGTTGTACAAAGAATG
TAACAGAATAAAA-------------------------------------AGAATGTAACAAAAAAAACTCTGAATCCCT
GCGGTG------AAAGTACTGCACGGATCTGAAAACCCCAGCAGCATAACCTTGGTGGCTCCGTTCTTCCCCAAAG----
--GGCAGCAGAGTCCAACAAACCCGCGGACCCACCGAAGTACGCGCCGGCACGCATCCCTCCCCTACTGCGCTGCCGGAT
CGCCGCCTCCCCACCGGTGACGTGCGCCGTCAATCGCAAATACGGCGCCAGACGTTACACCGC----CCGCCCGCACAGC
CTCGCCTCGCGCTCGCCATGGATCGCGCGCGCCACAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCGCATTCCTCCCC
CGCGCGGCCGCCGGCGACCAGCCCGCCTCGGCGGCCTTCGAGCTCGACGAGGACGACCTCTTCGGCTCGGGGGTCGGATC
TCCCGAGCGGCCGCAGCCGCCGCCGCCGCGCCGGCCCTTGTTCATCTCCTCCTTCCGCACCGCAAACCCTAGCCCCCGCC
TCCGCCGCCCGCCGGGGGGCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTCTCTCGCCGCCCC---------CGTCC
GCCTCGACGTCACCCGCGTCTCCGGCGACGGCCCTTCCGCGCATGATCCCCGCCATCCCCCGCCCGGCGCCGGCGCCGGC
GATGCAAATGCCGCAGTCCGCGCCGGTGAATGTGCCGGTGGCGCGGATGCGGCGACCGCCGTTCGAGGCTTTCGC-----
---GAGTGAACCCGATGAGGAGGACGAGGACGAGGAGATGCTGCCGCCGCACGAGATGGTGGCGCGCTCGCGGGCGCGGG
AGTCGCCCATGACGACCTTCTCGGTGCTGGAAGGCGCTGGGCG-------------------------------------
---------------------------------------------------CACGCTCAAGGGGAGGGACCTCCGCCAGG
TACGCAATGCCGTGTGGCGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGTAGCTGCCTTCGACCAGTC
--ATTGAGTTTGTGTGTTTGAATTATTTTGTACAT------------------T--------------------------
-ACGCGTGATCAGGTGTTAATTTTAGCTACACCTGTAAAAATGTGTGTTGTATCACTCACCATTACGGCATTACTCTTAT
TTATGAACTCTTTATTTGAGCTGTCATTAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGTGTTCTTATGGATGT
TTCTGTGT--TAATTTGCCCCAAGAGATATGGTTTATCAATCCTTACTATGGTTACATTCCGAAAGTATGTAGTTTTAAC
ATCGAACAATGTAAACTTGGGCATATTTTGAGTTATTGTGGTGTAGATTACTTTGCACTGCACTTATGGAG---------
---------TTGGATGCTTTACTCGAGCTTGTTAGCTACTGCAGCTTTGTTTGGTGAAGA-CGATAGTTTTGCAGTTCTT
TTTGCCGATGTGATTCTGCAAACTATCCATCGTTTATCGTATTTGAGGTCACGCATAGGACATGGAAATGGATCATGGGT
GCAATGTTGTTCAGGTGTTATAA-ATTTTACTGCAATTGATGGTGATGTTCAGTATTCAGGGTCCGAGTTAAATAA-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTCCTCGAATTTTCATTGTGATGTTTATCTGGATATTAAAATTATTTTAGGAAGT
TTATAGTTTAGTCAT--AATTTAGAGTA---CTAAGATACTAGGCTA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTCAGAGATGCACAATCAGGCACTCGACTAATTTTAGTCTAAACCC-AGTTTAAATATTGTTCATAGTAT
AGTC---GAACACTATCTTGTATGTATGCCAGATCGTCAGGTCTATGGAGCTGTGATTCTGGATTTCCAAAAGATATCGG
TAGCTTAGCTGTCGAAATAGTTCAAGCAAACAGAAAATATAGCTTA--------CCATGACCCCCCACATGTTCTTATTA
TTAAGGAACACTTGTTGCCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>chr3B_46
GAGT---------------------------------------------CTAGGTCAGATGGTTAGTTTCTTTGTGGTGG
AACTAGCCTACCAGACTTCAAGTCCTAGACTTGACAATGGTGATCATATTTTCTAAAACTATTTTAGGCTTTTCGGCAAT
GTGTCGTTCAGTGGGAGGAGATGTTTTCATTGATTATGTAGGCGCATATGATGACTTCGTCAATCAAGATGTGATGTTGG
CTCAGTATTTTG--GAGGTGTGTGTGCGTTCATATAAGTGAGTGTTT-GTGTTTGTATGAGTGCATGCGTTTGTACTCTG
TTAAAAATAAAACTTAAACTATAAAGC-----AGGAAGACACATTCAAGCATCTATCTATTACAACGAACTTGTGTGTTC
ATTCTATTTTTCTAATTCCAACCCCAATGCTCGGCTTATAAAAAGAAACGCTCACTATTGCACCTTGAATCAAATCCTCT
TAAGTTTGTGATCAACATCCAAAGTTCGAAACCATACTCAGTCTCAAGTTCGTTTTACAGTTTTAT--------------
-----AATTGAAATTTCAGGACTATTTGTTTGGCCGCATTCTCAAAACGCGGGAATAGGAAAAAAAATACAG--AGTTGA
AGTGACATCGCCTAGTGCATTAGCGTGTATAAGCGGGCTCTAGGCACCGTTTTTTGCAAAAGAGGGTAGTAGTTTTTTTT
TTGAGGGGTAAGAGGGTAGTAGTTGTAGTACAAAGAATGTGGAAAAAAAGAGAATGTAACAAAAAAAAATCTGAATCCAT
ACCGTG------AAAGTACTGCACGGATCTGAAAACCCCAGCGGTACAACCTTGGTGGCTCCGTTCTTCCCCAAAG----
--GGCAGCAGAGTCCAACAAACCCGCGGACCCACCGAAGTACGCGCCGGCACGCATCCCTCCCCTACTGCGCTGCCGGAT
CGCCGCCTCCCCACCGGTGACGTTTGCCGTCAATCGCGAATCCGGCGCCAGCCGTTACATCGCTCGTCCGCCCGCACAGC
-----------CTCGCCATGGATCGCGCGCGCCACAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCGCATTCCTCCCC
CGCGCGGCCGCCGGCGACCAGCCCGCCTCGGCGGCCTTCGAGCTCGACGAGGACGACCTCTTCGGCTCGGGGGTCGGATC
TCCCGAGCGGCCGCAGCCGCCGCCGCCGCGCCGGCCCCTGCTCATGTCCTCCGTCCGCGCCGCAAACCCTAGCCCCCGCC
TCCGCCGCCCGCCGGGGGGCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTCTCTCGCCGCCCCCGTCTGCTTCGTCC
GCCTCGACGTCCCCCGCGTCTCCGGCGATGGCCCTTCCGCGCATGATCCCCGCCATCCCCCGCCCGGCGCCGACGCCGGC
GATGCAAATGCCGCAGTCCGCGCCGGTGAATGTCCCGGTAGCGCGGCTGCGGCGACCGCCGTTCGAGACGTTCGT-----
---GAGTGAACCGGATGAGGAGGAGGACGACGACGAGATGCTGCCGCCGCACGAGATGGTGGCGCGCTCGCGGGCGCGGG
AGTCGCCCATGACGACCTTCTCGGTGCTGGAGGGCGCTGGACG-------------------------------------
---------------------------------------------------CACCCTCAAGGGGAGGGACCTCCGCCAGG
TACGCAATGCCGTGTGGCGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCAATTGGCAGCTGCCTTCGACCACAT
TGATTGAGTTTGTGTGTTTGAATTATTTTGTACAT------------------T--------------------------
-ACGCGTGATCAGGTGTTAATTTTAGCTACACCTGTAAAA-TGTGTGTTGTATCGCTCACCAGTGCGGCATTACTCTTAT
TTATGAACTCTCTATTTGAGCTGTCAGGAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGCGTTCTTATGTATCT
TTCTGTGTTATAATTTACCCCAAGAGATATGGTTTACCGATCCTTTCTATTGTTACATTCCGAAAGTACGAACTTTTAAC
ATTGAAAGATGTAAACTTAGGCATATTTTGAGATATTGTGATGTAGATTACTTTGGACTGCACTTATGGAG---------
---------CTGGATTCTTTACTTGAGCTTGTTAGCTACTGCAGCTTTGTTTGGTGAAGA-AGGTAGTTTTGCAGTTCTT
TTTGCCGATGTGATTCTGCAAACTATCCATGATTCATCGTATTTGAGGTTGCACGTAGGATGTGGAAATGGATCATTGGT
GCAAAATTGTTCAGGTGTTATAA-ATTTGACTGCAATTGATGGTGCTGTTCAGTATTTAGG-TTTGAGTTAAATAT-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTGCTCGAATTTTCATTGTGATGTTTACCTCGATATTAAAATTATTTTAG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TTTTAGTCTAAACCCAGGTTTAAATATTGTTCATAGTAT
CGTC---GAACACTATCTTTTATGTATGCCAGATGGTCAGGTCTATGGAGCTGTGATTCGGGAATTCCAAAAGAAATCGA
TGGCTTAGCTGTCCAAATAGTTCAGGCAAACAGAAAATATAGCTTAATGGAGCTCCATGATCACCCACTTGTTTTTATTA
TCAAGGAACACTTGTTGCCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>chr3A_725
--------------------------------------------------------------------------------
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----------------------------TACAAAGAATGTCAGA----------------AAGGAAAACTCAGAACCCCT
GCCGTGAAAAAAAAAGTACTGCACGGATCTGAAAACCCCAGCAGCATAACCTTGGTGGCTCCGTTCTTCCCCAAAGGCCA
AAGGCAGCAGAGTCCAACAAACCCGCGGACCCACCGATGCCCGCGCCGGCACGCATCCCTCCCCTACTGCGCTGCCGGAT
CGCCGCCTCCCCACCGGTGACGTCTGCCGTCAATCGCGAATCCGGCGCCAGCCGTTACACCGC----C------------
-----------------------CGCGCGCGCCACAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCGCATTCCTCCCC
CGCGCGGCCGCCGCCGACCAGCCCGCCTCGGCGGCCTTCGAGCTCGACGAGGACGACCTCTTCGGCTCGGGGGTCGGATC
TCCCGAGCGGCCGCAGCCGCCGCCGCCGCGCCGGCCCTTGTTCATCTCCTCCTTCCGCGCCGCAAACCCTAGCCCCCGCC
TCCGCCGCCCGCCGGGGGGCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTCTCTCGCCGCCCC---------CGTCC
GCCTCGACGTCTCCCGCGTCTCCGGCGACGGCCCTTCCGCGCATGATCCCCGCCATCCCCCGCCCGGCGCCGGCGCCGGC
GATGCAAATGCCGCAGTCTGCGCCGGTGAATGTGCCGGTGGCGCGGATGCGGCGGCCGCCGTTCGAGGCGTTCGC-----
---GAGTGAACCGGACGAGGAGGAGGACGACGAGGAGATGCTGCCGCCGCACGAGATGGTGGCGCGCTCGCGGGCGCGGG
AGTCGCCCATGACGACCTTCTCGGTGCTGGAGGGCGCCGGGCG-------------------------------------
---------------------------------------------------CACGCTCAAGGGGAGGGACCTCCGCCAGG
TACGCAATGCAGTGTGGCGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGCAGCTGCCTTCGGCCACAG
CGATTGAGTTCGTGTGCTTGAATTATTTTGTACAT------------------TACGCGTGATCAGGTGTTAATTTTAGC
TAC---------------------------ACCTGTAAAA-TATGTGTTGTATCACTCACCAGTGCGGCATTGCTCTTAT
TTATGAACTCTCTATTTGAGCTGTCAGGAGACATTTGAACTATTTGGTATGGATCAAGATAATTGTGTTCGTATGGATGT
TTCTGTGT--TAATTTACCCCAATAGATATGGTTTATCGATCCTTACTATGGTTACATTCCGAAAGTATGTAGTTTTAAC
ATCGAACGATGTAAACTTGGGCATATTTTGAGATATTGTGATGTAGATTAGTTTGCACTGCACTTGTGGAGCTGGATTCT
TTACTGGAGCTGGATTCTTTACTGGAGCTCGTTAGCTACTGCAGCTTCGTTTGGTGAAGA-AGATAGTTTTGCTGTTCTT
TTTGCCGATGTGATTCTGCAAACTATCCATCGTTTATCGTATTTGAGGTCGCGTGTAGGACATGGAAATGGATCATGGGT
GCAATATTGTTCAGGTGTTATAA-ATTTTACTGCAATTGATGGTGCTGTTCAGTGTTCAGGGTCCGAGTTAAATATGGCT
CTGCCTGCTGCTTAGCTGAAGGTGTGTCCCCGAATTTTCATTTTGATGTTTACCTAGATATTAAAATTGTTTTAGGAAGT
TTATACCTTAATCAT--AATTTAGAGTAGTACCAAGACACTAGACTA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTGAGAGATGCACAATCAGGCAGTCGACTAATTTTAGTCTAAACCCAGGTTTAAATATTGTTCAGAGTAT
AGTCGGTGAACACCATCTTTTATGTATGCCAGATCGTCAGGTCTATGGAGCTGTGATTCTGGATTTCCAAAAGAAATCGA
TGGCTTAGCTGTCGAAGTAGTTCAAGCAAACAGAAAATGTAGCTTATTGGAACTCCATGATCCCCCACTTGTTTTTATTA
TCAAGGAACACTTGTTGCCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>chr1A_995
--------------------------------------------------------------------------------
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-----------CTCGCCATAGATCGTGCGCGCCATAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCACATTCCTCCCC
CGCGCGGCCGCCGGCGACCAACCCGCCTCGGCGGCCTTCGAGCTCGACGTGGACGACCTCTTCGGT------------TC
TCCCGAGCGGCCGCGGCCGCAGCCGCGACGCCGGCCCTTGCTCATCTCCTCCATCTGCGCCGCAAACCCTAGCCCCCCG-
--CGCCGCCCGCCGGGGGCCATCCTCGAGGCCCTCCCCGAGCGCCTCGAGCCTCTCTCGCCGCCCCCGTCTGCTTCATTC
GTCTCGACATCCCCCGCGTCTCCGGCGATGGCCCTTCCACGCATGATCCCCGCCATCCCCCGCCCGGTGCCGTCGTCGGC
GATGCACATGCCGCAGTGCGCGCCGATGAATGTGCCAGCGGCGCGGATGCGGCGACCGACGGTCGAGGCGTTCGCAACTT
CGCGAGTGAAGCAGATGAGGACGACTACGACGTGGAGATGTTGTCGCCGCACGAGATGGTGGCGCGCTCGCCGGCGTGGG
AGTCGCCCATGACGACCTTCTGGGTGTTGGAGGGCGCTGGACACACGCTCCCATGACGACC-------------------
-------------------------TTCTGGGTGCTGGAGGGCGCTGGACACACGCTCAAGGGGAGGCACCTCCGCCAGG
TACGCAATGCCGTGTGGTGGAAGACCTGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGTAGCTGCCT------ACAG
CTATTGAATTTGTGTGTTTGAATTATTTTGAACAT------------------T--------------------------
-AC---------------------------ACCTGTAAAA-TTTGTGTTGTATTACTCACCATTCCGGCATTACTCTTAT
TTATGAACTATCTATTTGAGCTCTCAGGAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGTGCTTTTATGGATGT
TTCTGTGT--TAATTTACCCCAAGAGATATGATTTATCGATCCTTAGTATGGTTACATTCCAAAAGTATGTAGTTTGAAC
ATCGGACGATGTAAACTTGGGCATATTTTGAGATATTGTGGTGTAGATTACTTTGCACTGCACCTA--------------
----TGGAGTTGGATTCTTTACTGGAGCTTGTTAGCCACTGCAGCTTCGTTTGGTGAAGA-CGATAGTTTTGCAGTTCCT
TTTAGCGATGTTATTCTGCAAAGTATCCATTGTTTATCGTATTTGAGA-CGCGCATAGGACGTGGAAATGGATCATCGGA
GCAATATTGTTCAGGTGTTATAA-ATTTTACTGCACTTGATGGTGATGTTCAGTATTCAGG-TCTGAGTTAAATAT-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTGCTCGGATTTTCATTCTGATGTTTACCTGGATAATTAAATTATTTTAGGAAGT
TTATAGTTTAATCATAAAATTTAGAGTA---CTAAGATACTAGACTA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTCAGAGATGCATAATCAGGCAGT-GTCTAATTTTGGTCTAAACCCAGGTTTAAATACTGTTCAGAATAT
AGTC---AAACACTATCTTTTATGTATGCCAGAGCATCAGGTCAATGGAGCTGTGATTCAGGATTTCCAAAAGAAATCGA
CGGCTTAGCTGTCAAAATAGTTGAAACAAACAGAAAATTATGCTTAATGGGGCTCCATGATCCCCCACTTGTTTCTATTA
TTAAGGAACATTTGTTACCTTT-----------------------------
>chr5A_995
--------------------------------------------------------------------------------
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-----------CTCGCCATAGATCGTGCGCGCCATAAGAGCTCGCCCAGCTCCGAGCGCTTCCTCGGCGCATTCCTCCCC
CGCGCGGCCGCCGGCGACCAACCCGCCTCGGCGGCCTTCGAGCTCGACGTGGACGACCTCTTCGGT------------TC
TCCCGAGCGGCCGCGACCGCAGCCGCGACGCCGGCCCTTGCTCATCTCCTCCATCTGCGCCGCAAACCCTAGCCCCCCG-
--CGCCGCCCGCCGGGG-CCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTTTCTCGCCGCCCCCGTCTGCTTCATTC
GTCTCGACATCCCCCGCGTCTCCGGCGATGGCCCTTCCACGCATGATCCCCGCCATCCCCCGCCCAGTGCCGTCGCCGGC
GATGCACATGCCGCAATGCGCGCCGATGAATGTGCCAGCGGCGCGGATGCGGCGACCGACGGTCGAGGCGTTCGCAACTT
CGCGAGTGAAGCAGATGAGGACGACTACGACGTGGAGATGTTGTCGCCGCACGAGATGGTGGCGCGCTCGCCGGCGTGGG
AGTCGCCCATGACGACCTTCTAGATGCTGGAGGGCGCTGGACACACGCTCCCATGACGACC-------------------
-------------------------TTCTGGTTGCTGGAGGGCGCTGGACACACGCTCAAGGGCAGGCACCTCCGCCAGG
TACGCAATGCCGTGTGGTGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGTAGCTGCCT------ACAG
CTATTGAATTTGTGTGTTTGAATTATTTTGAACATTACGCGTGATCAAGTGGCT--------------------------
-AC---------------------------ACCTGTAAAA-TTTGTGTTGTATTACTCACCATTACGGCATTACTCTTAT
TTATGAACTATCTATTTGAGCTCTCAGGAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGTGCTTTTATGGATGT
TTCTGTGT--TAATTTACCCCAAGAGATATGATTTATCGATCCTTAGTATGGTTACATTCCAAAAGTATGTAGTTTGAAC
ATCGGACGATGTAAACTTGGGCATATTTTGAGATATTGTGGTGTAGATTACTTTGCACTGCATCTA--------------
----TGGAGTTGGATTCTTTACTGGAGCTTGTTAGCCACTGCAGCTTCGTTTGGTGAAGA-TGATAGTTTTGCAGTTCCT
TTTAGCGATGTTATTCTGCAAAGTATCCATTGTTTATCGTATTTGAGA-CGCGCATAGGACGTGGAAATGGATCATCGGA
GCAATATTGTTCAGGTGTTATAA-ATTTTATTGCACTTGATGGTGATGTTCAGTATTCAGG-TCTGAGTTAAATAT-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTGCTCGAATTTTCATTCTGATGTTTACCTGGATAATTAAATTATTTTAGGAAGT
TTATAGTTTAATCATAAAATTTAGAGTA---CTAAGATACTAGACTATGGGCCAGTTCTTTTGGGCGATTCTACCAGAAT
CACCCCCCTCCCTAGCTTCTCCCAGAATCATCACTCCATATGTTTTTTACAATCCTAACTAATTAGACCTTAACTAAATA
GGATTGTAAAAAAAATATGGAGTGACGATTCTGGGAGAAGCTGAGGAGGGGGGAGATTCTGGGAGAATCACCGAAAAGAA
CTGGCCCTATGTCAGAGATGCATAATCAGGCAGT-GTCTAATTTTGGTCTAAACCCAGGTTTAAATACTGTTTAGAATAT
AGTC---AAACACTATCTTTTATGTATGCCAGAGCATCAGGTCAATGGAGCTGTGATTCAGGATTTCCAAAAGAAATCGA
CAGCTTAGCTGTCGAAATAGTTAAAACAAACAGAAAATTATGCTTAATGGGGCTCCATGATCCCCCACTTGTTTCTATTA
TTAAGGAACATTTGTTACCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>chr3A_1019
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------AAGAGCTCGCACAGCTCCGAGTGCTTCCTCGGCGCATTCCTCCCA
TGCGCGGCCGCCGGCGACCAACCCGCCTCGGCGGCCTTCGAGCTCGACGTGGACGACCTCTTCGGT------------TC
TCCCGAGCGGCCGCGGCCGCAGCCGCGACGCCGGCCCTTGCTCATCTCCTCCATCTGCGCCGCAAACCCTAGCCCCCCG-
--TGCCGCCCGCCGGGGGGCATCCTCGAGGCCCTCCCCGAGCGCCTCGGGCCTCTCTCGCCGCCCCCGTCTGCTTCATTC
GTCTCGACATCCCCCGCGTCCCCGGCGATGGCCCTTCGACGCATGATCCCCGCCATCCCCCGCCCGGTGCCGTCGCCGGC
GATGCACATGCCGCAGTGCGTGCCGATGAATGTGCCAGCGGCGCGGATGCGGCGACCGACGGTCGAGGCGTTCGCAACTT
CGCGAGTGAAGCAGATGAGGACGACTACGACGTGGAGATGTTGTCGCCGCACGAGATGGTGGCGCGCTCGCCGGCGTGGG
AGTCGCCCATGACGACCTTCTGGGTGCTGGAGGGCGCTGGACACACGCTCCCATGACGACCTTCTGGGTGCTGGAGGGCG
CTGGACACACGCTCCCATGACGACCTTCTGGGTGCTGGAGGGCGCTGGACACACGCTCAAGGGGAGGCACCTCCGCCAGG
TACGCAATGCCGTGTGGTGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGTAGCTGCCT------ACAG
CTATTGAATTTGTGTGTTTGAATTATTTTGAACATTACGCGTGATCAAGTGGCT--------------------------
-AC---------------------------ACCTGTAAAA-TTTGTGTTGTATTACTCACCATTACGGCATTACTCTTAT
TTATGAACTATCTATTTGAGCTCTCAGGAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGTGCTTTTATGGATGT
TTCTGTGT--TAATTTACCCCAAGAGATATGATTTATCGATCCTTAGTATGGTTACATTCCAAAAGTATGTAGCTTGAAC
ATCGGACGATGTAAACTTGGGCATATTTTGAGATATTGTGGTGTAGATTACTTTGCACTGCACCTA--------------
----TGGAGTTGGATTCTTTACTGGAGCTTGTTAGCCACTGCAGCTTCGTTTGGTGAAGA-CGATAGTTTTGCAGTTCCT
TTTAGCGATGTTATTCTGCAAAGTATCCATTGTTTATCGTATTTGAGA-CGCGCATAGGACGTGGAAATGGATCATCGGA
GCAATATTGTTCAGGTGTTATAAAATTTTACTGCACTTGATGGTGATGTTCAGTATTCAGG-TCTGAGTTAAATAT-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTGCTCGAATTTTCATTCTGTTGTTTACCTGGATAATTAAATTATTTTAGGAAGT
TTATAGTTTAATCATAAAATTTAGAGTA---CTAAGATACTAGACTATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TCAGAGATGCATAATCAGTCAGT-GTCTAATTTTGGTCTAAACCCAGGTTTAAATACTGTTCAAAATAT
AGTC---AAACACTATCTTTTATGTATGCCAGAGCATCAGGTCAATGGAGCTGTGATTCAGGATTTCCAAAAGAAATCGA
CGGCTTAGCTGTCGAAATAGTTAAAACAAACAGAAAATTATGCTTAATGGGGCTCCATGATCCCCCACTTGTTTCTATTA
TTAAGGAACATTTGTTACCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>chr4A_1347
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CCATCCCCCGTCCGGTGCCGTCGCCGGT
GATGCACATGCCGCAGTGCGCGCCGGTGAATGTGCCAGGGGCGCGGATGCGGCGACCGACGGTCGAGGCGTTCGC-----
---GAGTGAAGCGGATGAGGACGACTACGACGTGGAGATGATGTCGCCGCAGGAGATGGTGGCGCGCTCGCCGGCGTGGG
AGCCGCCCATGACGACCTTCTGGGTGCTGGAGC-----------------------------------------------
----------------------------------CTGGAGGGCGCTGGACACACGCTCAAGGGGAGGGACCTCCGCCAGG
TACGCAATGCCGTGTGGTGGAAGACCGGCCTGCTCGATTGATCCATTGCGTTTGCATTTGGTAGCTGCCT------ACAG
CTATTGAATTTGTGTGTTTGAATTATTTTGTACATTACGCATGATCAGGTGGCT--------------------------
-AC---------------------------ACCTATGAAA-TTTGTGTTGTATTACTCACCATTACGGCATTACTCTTAT
TTATGAACTATCTATTTGAGCTCCCAGGAGACA-TTGAACTATTTGGTATGGATTAAGATAATTGTGCTTTTATGGATGT
TTCTGTGT--TAATTTACCCCAAGAGATATGACTTATCGATCCTTAGTATGCTTACATTCCGAAAGTATGTAGTTTAAAC
ATCGAACGATGTAAACTT-GGCATGTTTTGAGATATTGTGGTGTAGATTACTTTGCACTGCACCTA--------------
----TGGAGTTGGATTCTTTACTGGAGCTTGTTAACTACTGCAGCTTCGTTTGGTTAAGACTGATAGTTTTGCAGTTCCT
CTTGGCGATGTGATTCTGCAAAGTATCCATTGTTTATCGTATTTGAGA-CACGCATAGGATGTGGAAATGGATCATTGGT
GCACTATTATTCAGGTGTTAT-AAATTTTACTGCACTTGATGGTGATGTTCAGTATTCAGGGTCCGAGTTAAATAT-GCT
CTGCGTGCTGCTTAGCTGAAGGTGTGTGCTCGAATTTTCATTGTGATGTTTACCTGGATAATTAAATTATTTTAGGAAGT
TCATAGTTTAATCATAAAATTTAGAGTA---CCAAGGTACTAGACTATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TCAGAGATGCATAATCAGGCAGT-GACTAATTTTGGTCTAAACCCAAGTTTAAATACTGTTCAGAATAT
AGTC---GAACCCTATCTTTTATGTATGCCAGAGCGTCAGATCAATGGAGCTGTGATTCAGGATTTCCAAAAGAAATTGA
GGGCTTAGCTGTTGAAATAATTCAAACAAACAGAAAATTATGCTTAATGGGGCTCCATGATCCCCCACTTCTTTCTATTA
TTAAGGAACATTTGTTACCTTTCCCAGCTGTATGAACTAGAGATTGGTCGC
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
---------------S--------------------S--S--------S---S--------S-----S-----S--S---
---------------------S--S-S------S--S-S------S----S--------------------------S--
------------SS--S--------S---------------------S-------------S---SS----------S--
--------------------S------SSSSS--------------S-------------------S------------S
---S----------S----------S------S-SS-SSS-----S-----------------------------S---S
-S-----------------------------S-------SS-----------------SSSS-SSSSSSSSSSSSSSSSS
SSSSS------------SS------------S---------------S-S--------S--S-------S-SSS------
--------------------S-------S------SSS----S----S--S--------S-S-S---S---SSSSSSS-S
-SSSS-SS---S--------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------SS------------S---S---------S----------------------------
SSSSSSSSSSS---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------------------S----------
------------S--------------S----------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SSS
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
-----------S--------------SS----------------------------------------------------
----------------S---------------------S-----------------------------------------
-------S------------------------S-----------------------------------------------
---------------S-------S--------------------------------------------------------
--------------------------------------------------------------------------------
-----S---------------------------------------------------------------------S----
----------------------------------------------------S---------------------------
----------S--------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
-------------------S------------------------------------------------------S----S
------------------------------------------------------------S-------S----S------
---------------------------------------------------
>forward_367
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AGGCCAGGAAGACACATTCG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_1533
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGATGAGGAGGACGAGGACG------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>forward_691
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGCGCCTTCTAAGCACTGTC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_2264
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CGAGCTTGTTAGCTACTGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
