>input_sequence_73216
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------------------------------------------------------ATGGATTCCTCCGGCCCCGGCCCGTC
ATCCTCGGTCGTCGGCGGCGGCAGCGCGCCGGATGTTGCGCCGAAGCCGCCTGCTCAGCTGAGCAGGTATGAAGCGCAGA
AGCGCAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCG
CACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTTGGCAAGACCAAGGTGCACGTCGCTGGCTGCGCCTACTACGGCCA
GCCCAGCCCGCCGGCGCCGTGTCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGCCGCCTGCGCG
CTGCCTACGAGGAGAGCGGCGGCGCGCCGGAGTCAAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTGCGCGAGGTG
CGCGACTCGCACGCCAAGGCGCGCGGGATCCCGCACGAAAAGAAGAAACGGAAGCGCGCGCCGCAGGCCGCTGAGGCATC
TGGTTCATCGGCTGGCGCCGGAGCAGTCTTCGACAGGGACGTCGAGGGTAGCGCCGGCGATGGTACTCTTGCTGCGTCCG
CCGCGCAGGTTGGAGCTGGAGACGGTGGCAGTACTGCACCGAGCATCCCTTGA---------------------------
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>chr3A_1_TraesCS3A01G348900
TCTCGGGTTTCTGTTATCGCCGATAATCCATCAACACTATGGAGGAAGAAAGGATGCTCGCGGGGGAAAGAAGGCAGATG
TGTGTGGGGGGAGACGGGTTGAGTGCTTTTTCTTTGGGTGAGGGGTTCTAGACGCGTCGAGGAGTGCGTTTTGTAAGGAC
CAGAGTCCAAGGGCGTGCACGCATCCACCTATGAAGCAGGTGAAAATAGCGAGCGCGCTAGTGCGTGGGGG-TGGAGGGG
GACCATGCGTTACCTTTTCTAGCGTCAGGTGGGGCATATGGGGCGAGATTCTTTTCCAGTTAAATGTGTGCCGTGGAGCA
ATATACACGTCCATATAAAACTATTAATATGTATTTACTGGGTAGGCGTGTTCATATAAAACTATAAATACAAACTTGCT
GGCAAGACGCGTTTATATAAAACTATAAATACGCACATACCAACTTTAATGCGTTCATATAAAACTATAAATACGTACAT
ACCAGCTTTGACGCGTTCATATAAAACTATAAATACATATTTGTTGGATAAGCATGTTCGTATAAACCTATAAATGCATG
CTTAC-------------TCATATAAAATTATCAATTATATGCATTTGTTGGATAAACGCGTCCATATAAAACTATAAAT
ACATGCTCATACGACCGACACCGAGCCACAGACGCCTGCACCAGGTATACCTAGCATATATAGGTATGCACTTCTATACG
CCCCGAATTGTTCGGGCACGGGGTTGGGGTCACCGCGCTTGAATGGACCGCGTAGCTCCCATCATCCTCACGCGCGCCTC
CGCTCCATTTCAGTAGTAACATTCACCTCCCCCCCTCGGCTCCCCGTCGCTCTCGCCTCTCCTCCGCGCTCCCATCCCTT
TCCAACGTCCCATCTCCATCCACCCCAAGATCTCCTTTAACCCCTCCGGGTGCGCGTCCACTGATCACTCACTCGTCAGC
GGGATCGCGCGCCGATAGAGCTAGCTTTGCTCGCTCTCGCGGCCGCTGCTGCATATGGATTCCTCCGGCCCCGGCCCGTC
ATCCTCGGTCGTCGGCGGCGGCAGCGCGCCGGATGTTGCGCCGAAGCCGCCTGCTCAGCTGAGCAGGTATGAAGCGCAGA
AGCGCAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCG
CACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTTGGCAAGACCAAGGTGCACGTCGCTGGCTGCGCCTACTACGGCCA
GCCCAGCCCGCCGGCGCCGTGTCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGCCGCCTGCGCG
CTGCCTACGAGGAGAGCGGCGGCGCGCCGGAGTCAAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTGCGCGAGGTG
CGCGACTCGCACGCCAAGGCGCGCGGGATCCCGCACGAAAAGAAGAAACGGAAGCGCGCGCCGCAGGCCGCTGAGGCATC
TGGTTCATCGGCTGGCGCCGGAGCAGTCTTCGACAGGGACGTCGAGGGTAGCGCCGGCGATGGTACTCTTGCTGCGTCCG
CCGCGCAGGTTGGAGCTGGAGACGGTGGCAGTACTGCACCGAGCATCCCTTGAGTATAGTAGACTTGCAAACCTTGTCTA
TTAGTTTGTTTATCGTCTCCGGCATAGGCATAGCAAGATTTGAGCATTTCCTTTGGTATGCTTTGTTGCCTATATTACCT
CTAAATTTGCTGT-CCATTTTCAGATTAATTAGATTATTAATAAGTACTATTACAGGGCGTCGTCCTAGTAGTGTTCTAG
GGGAAGTGAATTAGTTGGCACAGCTAATTGTTCATTATCCCATACATATCCTGGTAATTTAAAAAATTGAGATTTGTGAT
CATAT----------TAGTTACTTCTTATGCTACATCTCAGCTTGATTGAGT-ACTCCGTTCATTTCTCTTATTAGAGCT
GTTTAATTTTTGCTAACA----CATGTAGCAATACT----GTGATCGGTGCACTCGCTCATACATCCATTGCAAACTAGT
--------------------------------------------------------------------AATCAATTCTTG
CACACAATAATATTTCTAGTACCGTTCGAAGCGTTTCTTGCTTAATTGGCAGAAACA---CTCGATGAATGGT-------
TTATTTCTATTTTCTCCTAGCTG--CTGGAGTAGATCGCTAGGAAGAATGGAGAATGTGCAAAGGAAAAGAGAGGGGTAC
AGCGCGCAGAAGCTAGGCCAGCCTGCATTGATGGCAGTACGCGATCACTCACTGGCACACATGCGCGCAACAGTTCCCGG
ACGGCCTTCTTCCCCAACCGGCCAATCTCTTGCTCTGACATGCCCTCCTCCTCCATTTGACCATTCCCTACATGCCACGG
GCCGCACAGCTGCAGCAACCTTTCTCAGACAGAGACCAGAGAGAGAGCGTGTATGTGTGTGTGAGAGAGAGATAGATGAA
CAGTTCTTGCGGTTTCTAATGGCGATGGAGAGCTGCATGAACAGTTCTTGCGGTTTGAGG--------------------
GAGAGAGATTTAGGGCTAGGCATGCACGCGCCAGGGGTTTGTCCGGAGAGGCCTTAAATAGAAAGGAGCGGGGGAGGGGG
AGGCGATAGCTGCGCTGGTCCCCGGCCGGAGGATTGGATGGGACTGTAGGATA
>chr3D_1
TCTCGGGTTTCTGTCACCGCCAATAATCCATCGACACTATGGAGGAGGAAGGGATGCTTGCGGGGGAAAGAAGGCAGATG
--TGTGTGAGGAGACGGGCTGAGTGCTTTTTCCTTGGGTGAGGGGTTCTAGACGCGTCGAGGCGTGCGTTTTGTAGGGAC
TAGAGTCCAGGGGCGTGCACGCATCCAGCTATGAAGCAGGTGAAAATAGCGAGCGCGCTAGTGCGCGGGGGGTGGAGGGG
GACCAGGTGTTACCTTTTCCAGCGTGAGGTGGGGC--ATGGGGTGAGACTCTTTTTTAATTAAGTGTGTGTCGTGGAGCG
ATATACGCGTCCATGTAAAACTATTAATATATACTTACTGGGTAGGCGCGTTCATATAAAACTATAAATACAAACTTACT
TGCAAGACGCGTTTATATAAAACTATAAATATGCACATACC---------------------------------------
---AGCTTTGACGCGTTCATATAAAACTATAAATACATATTTGTTGGATAAGCACGTTTGTATAAATCGATAAATGCATG
ATTACTAGCTAGACGTGTTCATATAAAATTATAAATTATACGCATTTGTTGGATAAACGCGTCCATATAAAACTATAAAT
ACATGCTCATACGACCTACACGGAGCCACAGACGCCTGCACCAGGTATACCTAGCAT----AGGTATGCACTTCTATACG
CCCCGAATTGTTCCGGCACGGGGCTGGGGTCACCGCGCTTGAATGGACCGCGTAGCTCCCATCATCCTCACGCGCGCCTC
CGCTCCATTTCAGTAGTAACATTCACCT-CCTCCCTCGGCTCCCCGTCGCTCTCGCCTCTCCTCCGCGCTCCCATCCCTT
TCCAACGTCCCATCTCCATCCACCCCAAGATCTCCTTTAACCCCTCCGGGTGCGCGTCCACTGATCACTCACTCAC----
---------CGCCGGTCGAGCTAGCTTTGCTCGCTCCCGCGGCCGCTGTTGAACATGGATTCCTCCGGCCCCGGCCCGTC
ATCCTCCGTCGTCGGCGGCGGCAGCGCGCCAGACGTTGCGCCGAAGCCGCCTGCGCAGCTGAGCAGGTACGAGGCGCAGA
AGCGCAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCG
CACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTTGGCAAGACCAAGGTGCACGCCGTCGGCTGCGCCTTCTACGGCCA
GCCCAGCCCGCCGGGGCCGTGCCCGTGCCCACTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGCCGCCTGCGCG
CGGCCTACGAGGAGAGCGGCGGCGCGCCGGAGTCGAACCCCTTCGCCGCGCGGGCCGTCCGGATCTACCTGCGCGAGGTG
CGCGACTCGCACGCCAAGGCGCGCGGGATCCCGCACGAAAAGAAGAAACGGAAGCGCGCGCCGCAGGCCGCTGAGGCATC
TGGTTCATCGGCCGGCGCCGGAGCAGTCTTTGACAGGGACGTCGAGGGTAGCGCCGGCGATGGTGCTCTTGCTGCGTCCG
CCGCGCAGGCTGGAGCTGGAGACGGTGGCAGCACTGCACCGAACATCCCTTGAGTATAGTAGACTTGCAAACCTTGTCTA
TCAGTTCGTTTACCGTGTCCGGCATAGGCATAACAAGATTTGAGCTTTCCATTTGGTATGCTTTGTTGCTTATATTACCT
CTAAATTTTCTGTCCCATTTTCAGATTAATTAGATTATTAATAAGTACTATTACAGGGCGTTGTAGTAGTAGTGTTCTAG
GGGAAGTGAATCAATTGGCACAGCTGATTGTTCATCATCCCATACATACCCTGGTAATTTAAGAAAATGAGATTTGTGGT
CATAT----------TAGTTACTTCTTATGCTACCTCTCAGCTTGATCGAGTTACTCCGTTCATTTCTCTTATTAGAGCT
GTTTAATTTTTGCTAACACATGCATGTAGCAATAATGTGAGTGATCGGTGCACTCACTCATACATCCATTGCAAACTACT
CCCTCCATTCCAAATTACTCGTCATGGTTTTAGTTCCACGACGAGTAATTTGAAACGGAGGGAGTAGCAATCAATTCTTG
CACATAATAATATTTCTAGTACCGTTGGAAGCGTTTCTTGCTTAATTTGCAGAAGAACTGCTTGATGAATGGT-------
TTATTTCTAGTTTCTCCTAGCTATACTGGAGTAGATCCCTAGGAAGAATGGAGAATGTGCAAAGGAAAAGAGAGGGGTAC
AGCGCGCAGAAGCTAGGCCAGCCTGCATTGATGTTAGTACGCGATCACTCACTGGCACACATGCGCGGAACAGTTCCCGG
ACGGCCTTCTTCCCCAACCGGCCAATCTCTTGCTCTGACATACCCCCCTCCTCCATTTGACCATTCCCTACATGCCACGG
GCCGCACAGCTGCAGCAACCTTTCTCAGACAGAGACCAGAGAGAGAGCGTGTGTGTGA----GAGAGAGAGATAGATGAA
CAGTTCTTGCGGTTTCTAATGGCGAGAGAGAGATGCATGAACAGTTCTTGCGGTTTGAGGGGGGGAGGGAGGGGGAGAGA
GAGAGAGATTTAGGGCTAGGCATGCACGCGCGAGGGGTTTGTCCGGAGAGGCCTTAAATAGAAAGGAGCGGGGAAGGGGG
AGGCGATAGCTGCGCTGGTCCCCGGCCGGAGGATTGGATGGGACTGTAGGATA
>chr3B_372
CATATAAAAAATATTAATACACACTTACCGGATAGGCACGTTTATAT---------------------------------
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---------------------------------------------------------AAAACTATAAATACAAACTTACT
GGCAAGACACGTTCATATAAAACTATAAATACACACATACC---------------------------------------
---AGCTTTTACGCGTTCATATAAAACTATAAATACATATTTCCTGGATAGACGCGTCCGTATAAAATTATAAATACACG
CTTACTGACTAGACGCGTTCATATAATTA---AAACTATAAATATTTGTTGGATATACGCGTCCATATATAACTATAAAT
ACATGCTCATACGACCTACACGGAGCCACACACGCCTGCACCAGGTATACCTAGCAT----AGGTATGCACTTCTATACG
CCCCAAATTGTTCCGGCACGGGTCTGGGGTCACCGCGCTTGAATGGACCGCGTAGCTCCCATCATCCTCACGCGCGCCTC
CGCTCCATTTCAGTAGTAACATTCACCT-CCCCCCTCGGCTCCCCGTCGCTCTCGCCTCTCCTCCGCGCTCCCATCCCTT
TCCAACGTCCCATCTCCATCCACCCCAAGATCTCCTTTAACCCCTCCGGGTGCGCGTCCACTGGTCACTCACTCGTCACC
GGGATCGCGCGCCGATAGAGCTAGCTTTGCTCGCTCTCGCGGCCGGTGTTGCATATGGATTCCTCCGGCCCCGGCCCGTC
ATCCTCGGTCGTCGGCGGCGGCAGCGCGCCGGATGTTGCGCCGAAGCCGCCTGCGCAGCTGAGCAGGTACGAGGCGCAGA
AGCGTAGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGGCGCGGTGCAGCGGCGCG
CACGTGATCGAGTTCCTCAGGTACCTGGACCAGTTTGGCAAGACCAAGGTGCACGTCGCCGGCTGCGCCTACTACGGCCA
GCCCAGCCCGCCGGCGCCGTGTCCGTGCCCGCTGCGCCAGGCATGGGGGTCCCTCGACGCGCTCATCGGCCGCCTGCGCG
CTGCCTACGAGGAGAGCGGCGGCGCGCCCGAGTCCAACCCCTTCGCCGCGCGGGCCGTCCGGATCTACCTGCGCGAGGTG
CGCGACTCGCACGCCAAGGCGCGCGGGATCCCGCACGAAAAGAAGAAACGGAAGCGCGCGCCGCAGGCCGCTGAGGCATC
TGGTTCATCGGCTGGCGCCGGAGCAGTCTTCGACAGGGACGTCGAGGGTAGCTTCGGCGATGGTGCTCTTGCTGCGTCCG
CCGCGCAGGCTGGAGCTGGAGACGGTGGCAGTACTGCACCGAGCATCTCTTGAGTATAGTAGACTTGCAAACCTTGCCTA
TTAGTTTGTTTATCGTCTCCGGCATAGGCCTAGCAAGATTTGAGCTTTCCCTTTGGTATACTTTGTTCCCTATATTATCT
CTATATTTTCTGTGCCATTTTCAGATTAATTAGATTATTAATAAGTACTGTTACAGGGCGTCGTAGTAGTAGTGTTCTAG
GGGAAGTGAATTAATTGGCACAGCTAATTGTTCATTATCCCATACATATCCTGGTAACTTAAGAAATTGAGATTTGTGGT
CATATACTCATATTATAGCTACTTCTTATGCTACCTCTCAGCTTGGTCATGT-ACTCCTT--ATTTCTCTTATTAGAGGT
GTTTAATTTGTGCTCATTAGCTCATTA----------------------------GCTCATACATCCATTGCAAGCTAGT
--------------------------------------------------------------------AATCAATTCTTG
CACATGATAATATTTCTAGTACCGTTCGAAGCGTTTCTTGCTTAATTTGCAGAAGCACTG---GATGAATGGTTTCTTGC
TTATTTCTATTTTCTCCTAGC--TACTGGAGTAGATCGCTAGGAAGAATGGAAAGAGTGCAAAGGAAAAGAGAGGGGTAC
AGCGCGCAGAAGCTAGGCCAGCCTGCATTGATGGCAGTACGCGATCACTCACTGGCACACATGCGCGGAACAGTTCCCGG
ACGGCCTTCTTCCCCAACCGGCCAATCTCTTGCTCTGACATACCCCCCTCCTCCATTTGACCATTCCCTACATGCCACGG
GCCGCACAGCTGCAGGAACCTTTCTCAGACAGAGACCAGAGAGAGAGCGTGTGTGT----------GAGAGAGAGATGAA
CAGTTTTTGCGGTTTCTAATGGCGAGAGAGAGATGCATGAACAGTTCTTGCGGTTTGAG----------------AGAAA
GAGGGAGGTTTAGGGCTAGGCATGCACGCGGGAGGGGTTTGTCCGGAGAGGCCTTAAATAGAAAGGAGCGGGGGAGGGGA
AGGCGATAGCTGCGCTGGTCCCCGGCCGGAGGATTGGATGGGACTGTAGGATA
>SNPs
----------------S----S----------S-------------S---S-------S---------------------
SS----S-S---------S-------------S-----------------------------S------------S----
S--------S-----------------S-------------------------------------S--------------
-----S-S-----------S-----S---------SS------S----S------SS-S----S------S--------S
------S-------S---------------S--S--------------S----------------------------S--
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---------------------------------------------------S-----------S-------------
--------------------------------S-------S---------------------------------------
----------------S----S-----------------------------------SSSS-------------------
-------------S---------S--------------------------------------------------------
----------------------------S---------------------------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------S-------------------------------
------------------------------------------------------S--------------S--S-------
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-----------------------------------------------------------S--------------------
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----------------------------------S-----------------S---------------------------
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----------------------------------------------------------------S---------------
---------S----------------------------------------------------------------------
---------------------------------------------S--S-------------------------------
--------S-------------------------------------------------------SS--------------
-------------S------------------------------------------------S---------------S-
----------------------------------S------------S--------------------------------
----------------------------------S---------------------------------------------
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----S------------------------------------------S------S-------S-----------------
----------------------S---------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------S---S----------------------------------
----------------------------------------------------S----SSSSS------------------
-------------------------SS-----S-----------------------------------------------
-------------------------------S------------------------------------------------
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>forward_662
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--ATGCTCATACGACCGACACC----------------------------------------------------------
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>reverse_2442
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-----------------------------------------GCCCTCCTCCTCCATTTGAC-------------------
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