>input_sequence_73179
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-----------------------------------ATGTCCA---------CCACCGGCGACGTGGA---GGTGGA----
--------------AATGCACGAGGAAGACCAGGAA-GGCGG---CG--GCA---------GGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGCCCACGACTGCGTGCTCGCCCCCTACTTCCCGGCGTCGCACCCC-CAC
CGCTACGCCTCCGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCGAGGTTGCTCCAGG-------TACGTGACCACTGGT
AATCGA----TCCGGCCACCATTGACATGTTAG-----AGCTCCTCCTTGCATTTGCACCGTTCAAGATTTAAATTGAGT
TGCCATTTT-----GCAGAGCTTGCCGGTGGACGAGAGAGCTCAGGCGGCGGAGACGATGGAGATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTATGGATGCACCGGGATCATCAGC----------CAGCTGCAGGAGGAGATT-CAGGC
CACGCAGTGCGAGCTCGCCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCCGCGCACGGTGC--
-----------------------GCAGCTGCAGGGTTCCACGGTTGCTCTTCCGCCGCCGCC---GCAGCATCAGCGTGA
------CGACGGCCACCGCGTCCCAATCTCGCAGATGCAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------G-CTGGGAGAGGCGGTGCCGTTGCTTGACCCGGACGA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GTTTCTAGATCTCGACGGGATTTGA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr5A_1_TraesCS5A01G515300
GGAAGGGAATTTGCGAATGGGGAACGAGGATTTTGCATTTTGAGAAAGAAAGAAAGTAATGTAACGGCATTTTTTGATAG
TTCGCCCAATAAATAACTAGAGAGTCCTTTCTACAAAATAACTTGTCCCCGGACCTCACGTGACTGTTTTGCGCTAAAAT
CGTGTCAGGTCAATGCCCTATGGAAGGATGTGGCACGCTAGTGACCAATGTTTGTTGATG-------CCCACCTCTCTTC
ATTAGTTCAGACTTTTGGATGAATTGGTCGGAGCATGAATTCAATATGAAATCAGAGACAAGAGGTCTTAAGTTCATGGT
CCTGCCACCACAGTATGAGAAAAATATTATGTGGCATACATTGATCCTACGTCTAAAATAGCCAAGACGTGACAGAGCGT
GTCGAAATAGATTGCCCGTCTGTT---------------------------------------GAAATGCAAG--TCAGG
GCCTGTTATTTTGTTTGTTTTCAGAGTCTGCGTGACGAAAGTGCATCCACAAGAAGAGTTCTATGACTGGCACTGCCAGT
GTCGTTTACTACTACTAACATTAACTTGTCCGAATTGTATATGCTGCACGTCCCCAATATTGCCATGTGGTTCATCAGCA
AAGCAAGGCTGCAGTTGCAGGATTACAGGAAGCTCTAGGATCTGCTCCAACTCCAAGAACGCCTACCCTACCTTCATCAG
TGTTGCGTAACAAGCAAACGCATCACTGGGTGGAGCTGGGGCGACGGCAACGGTGCAGTGCTGGCCGGGGAGACCAAGCG
CTGGCCCTGCGGAGAGAGTAAAAGGAAGGTGCAAACGGCGGCCGCCGTGCGGCGCGCT--TAGAATTGGCAACAGCAATG
CCGTTAAGCTT-GCCATGTTTACACC-GACGTAGCCGTTGGTGCTGCCATTTCTAGCTCCCCCCTCCATGCACGATGC--
-------------GTATATAAGCATGCGCTCACAAGATCTCCCCGGAATCTTCCAGAGATCCCACGAAATCCCACGAACT
CGCACCAGGATCCAGCAC----TAGATCAT----CATGTCCA---------CCACCGGCGACGTGGA---GGTGGA----
--------------AATGCACGAGGAAGACCAGGAA-GGCGG---CG--GCA---------GGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGCCCACGACTGCGTGCTCGCCCCCTACTTCCCGGCGTCGCACCCC-CAC
CGCTACGCCTCCGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCGAGGTTGCTCCAGG-------TACGTGACCACTGGT
AATCGA----TCCGGCCACCATTGACATGTTAG-----AGCTCCTCCTTGCATTTGCACCGTTCAAGATTTAAATTGAGT
TGCCATTTT-----GCAGAGCTTGCCGGTGGACGAGAGAGCTCAGGCGGCGGAGACGATGGAGATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTATGGATGCACCGGGATCATCAGC----------CAGCTGCAGGAGGAGATT-CAGGC
CACGCAGTGCGAGCTCGCCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCCGCGCACGGTGC--
-----------------------GCAGCTGCAGGGTTCCACGGTTGCTCTTCCGCCGCCGCC---GCAGCATCAGCGTGA
------CGACGGCCACCGCGTCCCAATCTCGCAGATGCAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------G-CTGGGAGAGGCGGTGCCGTTGCTTGACCCGGACGA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GTTTCTAGATCTCGACGGGATTTGAGCTCTGATCGATCAAG
CGCGTACG--TGCATGCGATGCAGGCT--GGGGAAATGTCAGGGCGAACGATGGTGGCATTGGGCTTTTTACCACTGATG
AAGTTGATAATTGATGAATGAATAATGTCGTATTGCAATGATTTACATGCAACCTTTTTTTTTGAATTGGTTTGAATTGC
TTACCACATATGTCACGTGATGTACATGCAACCTTTTATTGTCCGTGGGTAGAGAATCTCTTGTTAATTTGAGAGATTTT
ATTAAAGGCTTGTGTATTGGTGGTATTGAATAGAAATGTACAGATATCTGAATTCTGAAACGCGCATGCATTGGTGACGT
TGAGTAGGAATAAACTGAATCATGGTTTTCCATTTTGCTGTCCATATCAGCGGCTCATTTCTTCAATGCCTAATGCCTCC
ACAAGGAAGTTGAGCCTGAGCTGGAGGAAGAAGCTGAATTTCATGATCGGCCTGAAGATAAACTCCAGACGCCAATCGTG
CCGCCATCCTCGTAGTAAAAGGAAAGAAGCATGATTTGTTATTGAAAAGGGGGGTGCCATCGGAGTAGGACTGACAGATG
CTGTCACCATGGGTTTGAGCTTAGGTCCGGCGACACCAGCTTGGCTAGCAGAGCACTCAAGGTCTAGAAGCAAAT-----
-------------------------------------------CAGCCAAAATGACAGCGCCAAACAAAATGGATCTATG
CACGCTGGGGCAGAGGGGGTGAGCCCACTCCCCCTCTCTTCTCCTACCACCAGCAGAGATGGAGAACAG-----------
-------------------------------------------AGCAAAACAAATGCTTTGCTAGGATACAGATTAGAAA
AATGACAGAAACATGGCACATGGCAAAATGTTATATTGCAGCCAACAGAC----------GCATTTAGAACCGACTAGTA
CCGCACACGGCAATCCACCTCAAGACAGACATTTAACCCACAAAACAAGCACTT-----AGTTCAGGGATCACCGTTATG
AAACCCGACTACAACCAACACGGATCTTAAGTCGAGACTGGTCCACAATGACAGACGATGAATAC
>chr4B_4
---AGGGAATTTGCAAGTGGGGAAAGACGATTTTGCGATTCG----AGAAAGAAAGTAGTGTAACGGCATTTTTCGATAG
TT---------AATAACTACAAAGTCCTTTCTACAAAATAACTTGTCCCCAGACCTCGCGTGACCGTTTTGCGCTAAAAA
CATGTTAGGCCAACGCCCTATGGAAGGATATGGCACGCTAGTGACCAATGTTTGTTGAAATATATTACCCACCTTTCTTT
ATTAGTTTGGACTTTTGAATGAATTGGTCGGAGCATAAATTCAATGTGAAATCAGAACCAAGAGGTCTCAAGTTCATGAG
CCTGCCAACA-AGTATGGAAAAAG-ATTATGTGGCCTATGTTGACCCCACATCTAAGATAGCCAAGGTGTGAGGAGGCAT
GTCGAAATAGATTGCCCCTCTGTTCTT-----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------CATCAGTTCAGTCTTTCGGA-------------------------TGGGT
TGGCTCGAGCC-----------------------------------------------------------------CGAA
ATGCAGGTTTGAGGACCTGTTTTTTTGTTTGTTTTCATATAAGTGTGACTAAAATGCATCCACATGAAGAGTTC-TATGA
GTGGCACTGCCAGTGTCGTCTTACTACTAACATTAACTTGTCCGAATTATATATGCTGCACGTCCCCAATATTGCTATGT
GGTTCATCAAGCAAAGCAAGGCTGCAGTTGCAGGAATTGCAGGAAGCTAGGATCTGCTCCAACTCCAAGAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------CGCCTATCCTACCTTCATCAGTGTTGCGTAACAAGCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr4D_49
------------------------------------------------AAAGAAAGTAGTGTAACGACATTTTT-GATAG
TTCACCCAATAAATAAATACAAAGTCCTTTCTACAAAATAACTTGTCCCCAGATCTCGCGTGACCGTTTTGTGCTAAAAA
CGTGTCAGGTCAATTCCCTATGGAAGGATATGGCACGCTAGTGACCAATGTTTGTTGAAATATATTACGCACCTCTCTTC
ATTAGTTCGGACTTTTGGATGAATTGGTCGAAGCATTAATTCAATGTGGAATCAGAGCCAAGAGGTCTCAAGTTCATGAC
CCTGCCAACACAGTATGAAAAAAG-ATTATGTGGCCTATGATGATCCCACGTCTAAAATAGCCAAGACGTGAGGGGGCTT
GTCGAAATAGATTGCCCGTTTGTCTTCATCAGTTCATACTTTTAGATGGACTCGCTGGAGCCCGAAATGCAAGTTTCAGG
ACCTGTTATTTTGTTTGTTTTCAGAGTAGT-GTGACTAAAATGCATCCACAGGAAGAGTTCTATGAGTGGCACTGCCAGT
GTCGTTTACTACTA---ACATTAGCTTATCCAAATTATTTATGCTGCACGTCCCCAATTATTTAGA--------------
-----------CAGTTGCAGGATTAGGAAG----CTAGGATCTGCTCCAACTCCAAGAACGCCTACC-----TTCATCAG
CGTTGCCTAACAAGCAAAAGCATCACTAGGTGGAGCTGGAGCGACGGCAACGGTGCAGTGCTGGCCGGGGAGACCGAGCG
CGGGCCCTGCGGAGAGAGT-AAAGGAAGGTGCAAACGGCGGCTGCCGTGCGGCGCGCTCATAGAATTGGCAACAGCAATG
CCGTTAAGCTT-GCCGTGTTTACACC-GACGTAGCCGTTGGTGTTGCCATTTCCAGCGC-TCCCTCCATGCACGATGC--
-------------GCATATAAGCATGCGCCCACAAGATCTCCCCGAAATCTTCCA----------GAGATCCCACGAACT
CGCACCAGGATTTAGCAC----TAGATCAT----CATGTCGA---------CCACCGGC------GA---CGTGGA----
--------------AATGCAGGAAGAAGACCAGGAA-GGCGG---CG--GCAATAACCCGAAGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGCCCACGACTGCGTGCTCGCCCCCTACTTCCCGGCGTCGCACCCC-CAC
CGCTACGCCTCCGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCCAGGTTGCTCCAGG-------TACGTGGCCTCTAGT
ACCCAAC----CCGGCCACCATTGACAAGTTAG-----AGCTCGTCCTTGCATTTTCATCGTTCAGGATTTAAATTGAGT
TGCCATTTT-----GCAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCGGAGACGATGGCGATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTATGGATGCACCGGGGTCATCAGC----------CAGCTGCAGGAGGAGATC-CTGGC
CACGCAGTGCGAACTCGCCAGGACGCAGGCGCAGCTCGCCAT------------------CGTCCACGCGCACGGTGC--
-----------------------GCAACTGCAGGATTCTACTGTTGCTTTTCCTCCGCCGCA---GCCGCA---GCCTCG
GCGAATCGACGGTCACCATGTACCCGTCGCGCAGAGGCAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------C-CAGGAAGAGGCGGCGCCGTTGCTTGACCCGGACGA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GTTCCTAGATCTCGATGGATTTTGAGCTTCGATTGATGGAG
CGCGTACGCGTGC-----ATGCACGCT--AGGGAAATGTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr4B_709
--------------------------------------------------------------------------------
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------------------------------------TGGGGAGACGGCAACGGTGCAGCGCTGGCCGGGAAGACCGAGCA
CGGGCCCTGGGGAGCGAGT-AAAGGAAGGTGCAAACGGCTGCTGC-GTGCGGCGCGCT--TAGAATTGGCAACAGCAATG
CCGTTAAGCTT-ACCATGTTTACACC-GACGTAGCCGTTGGTGTTGCCATTTCCAGCGC-TCCCTCCATGCACGATGC--
-------------GTATATAAGCATGAGCCCACAAGATCTCCCCGAAATCTTCCA----------GAGATCCCACGAACT
CGCACCAGGATTTAGCAC----TAGATCAT----CATGTCGA---------CCACCGAC------GA---CGTGGA----
--------------AATGCAGGAAGAGGACCAGGAA-GGCGT---CG--GCAATAACCAGAGGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGCCCACGACTGCGTGCTCGCCCCCTACTTCCCGGCGTCGCACCCC-CAC
CGCTACGCCTCCGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCCAGGTTGCTCCAGG-------TACGTGACCTCTGGT
AATCGATCATTCCGGCCGC------------------------------------GCACGGTTCGACATTTGAATTGGGT
TGCCAC-TT-----GCAGAGCTTGCCGGCGGATGAGAGAGCTCATGCGGCGGAGGCGATGGCGATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTATGGATGCGCCGGGATCATCAGC----------CAGCTGCAGGAGGAGATT-CAGGC
CACGCAGTGCGAGCTCGCCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCCGCGCACGGTGC--
-----------------------GCAGCTGCAGG------------CTCTTCCGCCGCCGCCGCCGCCGCA---GCCAGA
------CGACGGCCACAGCGTCCCCGTCGCGCAGAGGCAGGG--------------------------------------
--------------------------------------------------------------------------------
--------------------G-CAGGGAGAGGCGGTGCCGTTGCTTGACCCGGACGA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GTTCCTAGGTCTCGACGGGCTTTGAGCTCTGATCGATCAAG
CGCGTACG--TGCATGCAATGCACGCT--GGGGAAATGTCAGGGCGATGAACCAG------------------------A
AAGGAAATGAGGCTGGGATGAATAGTTCCGTATTTTATACAGTGGCAGCTAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CTCCGGTCCGGTGGCAAGGCCATGTCTCTATGCACACACATCTCGGCCGTTGGTTCCAGGT
AGATCGAACGGCTCATGTTGTCCAGAGGCAGACACACCATCACCAGCCAAAATGACAGTGCCAAAT--AATGGATCTATG
CACGCT--------------------------------CTCTTCTACCACCAGCAGAGTGGGAGAAGAGAGCAAGAGGAA
GGTGGGACGGAAGTTAACACTGGCAGGACACCAGGTTAACTTCAGCAAAACAAATGCTTTTAGAA---------------
-----------------------------------------CCAACAGACATCTTCTTTAGCATTTAGAACCGACTAGTA
ACGCACACGGCAATCCACCTCAAGACAGACATT-AACCCACAAAACAAGCACTCCGAACAGTTCAGGAATCACCGTTATG
GAACCCGATTACAACCAACACGAATCTTAAGTCGCGACTGGTCCACAATGACAGACGATGAATAC
>chr5A_814
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AATTAGCAACAACAATG
CCGTTAAGCCT-GCCAAGTTTGCACC-GACGTAGCCGTTGGCGTTGCCATTCCCAGCTT-CCCCTCCATGCACGATGCAT
CCATCTCATTTGTGTATATAAACATGCACCCACAAGATCTCCCGGAAATCTTTCGAAGGATCCACGCGATCTCACGAACT
CACACCAAGATCCATCGC----TAGATCGTTCACCATGTCGACGGCCCCTGCCGGCAACGACGTGGAGCCGGAGGA----
--------------GGTGCAGGAGGAGGAGGAGGAA-GGCGG---CG--GCA---------GCGGCAACCCGAGGCGCTG
CGCAGCGTGCAAGTACCTGCGCCGGCGGTGCGGCCACGGCTGCGTGCTCGCCCCCTACTTCCCGGCGTCCCGCCCC-CGC
CGCTACGCCAACGTCCACCGGGTCTTCGGCGCCAGCAACGTTGCCAGGTTGCTCCAGG-------TAATGAAAAACCATC
AGCTGGTTAGTAAGTT----------------G-----AGCTCCCGA------TTGCATGGTTGGAGACTCACATTGAGC
TGCCAT-TTCGCGCGCAGAGCTTGCCCGTGGAGGAGAGAGCGCAGGCGGCTGAGACGATGGCGATGGAG------GCGCA
GTGGCGGGTAGGGGACCCGGTGTACGGCTGCGCCGGGGTCATCAAC----------CGGCTGCAGGAAGAGATC-CTCGC
CACGCAGTGCGAGCTCGCCAGGACCAGGGCGCAGCTCGCCAT------------------CGTCGTCGCGCACGGCGC--
-----------------------GCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5B_814
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------AATTAGCAACAACAATG
CCGTTAAGCTT-GCCATGTTTGCACC-GACGTAGCCGTTGGTGTTGCCATTCCCAGCTC-CCCATCCATGCATGTTGCAT
C-----CATTTGTGTATATAAGCATGCGCACACAAGATCTCCCAGAAATCTTTCGAAAGATCCACGCGATCCCACGAACT
CACACGAAGATCCATCGCTAGATCGATCAC----CATGTCCA---------CGGCCGGC------AA---CGAGGTGGAG
CCGGAGGAGTTGCAGGAGGAGGAGGAGGAGGAGGAA-GGCGG---CG--GC------------GGCAACCCGAGGCGCTG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGGCCACGGCTGCGCGCTCGCCCCCTACTTCCCGGCGTCCCGCCCC-CGC
CGCTACGCCAACGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCCAGGCTGCTCCAGG-------TAACTGAAAACCAAC
AGCCGGCTGT----------------AAGTTCG-----AGCTCCCGA------TTGCATGGTTGAAGACTCACATTGAGT
TCCCAT-TTCGCGCGCAGAGCTTGCCCGTGGAGGAGAGAGCGCAGGCGGCGGAGACGATGGCGATGGAG------GCGCA
GTGGCGGGTGGGGGACCCGGTGTACGGCTGCGCCGGCGTCATCAAC----------CGGCTGCAGGAGGAGATC-CTCGC
CACGCAATGCGAGCTCGCCAGGACCAGGGCGCAGCTCGCCAT------------------CGTCGTCGCGCACGGCGC--
-----------------------GCAGC----------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr5D_814
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------AATTAGCAACAACAATG
CCGTTAAGCTT-GCCATGTTTGCACC-GACGTAGCCGTTGGCGTTGCCATTCCCAGCTC-CCCGTCCATGCACTATGCAT
C-----CATTTGTGTATATAAGCATGCACCCACAAGATCTCCCAGAAATCTTTCGAAAGATCCACGCGATCTCACGAACT
CACACGAAGATCCGTCGC----TAGATCGTTCACCATGTCGACGGCCCCTGCCAGCAACGACGTGGA---GCCGGA----
--------------GGTGCTGGAGGAGGAGGAGGAA-GGCGG---CG--GC------------GGCAACCCGAGACGCTG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGGCCACGGCTGCGTGCTCGCCCCCTACTTCCCGACGTCCCGCCCC-CGC
CGCTACGCCAACGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCCAGGCTGCTCCAGG-------TAACTGAAAACGATC
AGCCGGCTGT----------------AAGTTAG-----AGCTCCCGA------TTGCGTTGTTGAAGATTCACATTGAGC
TGCCAT-TTCGCGCGCAGAGCTTGCCCGTGGAGGAAAGAGCGCAGGCGGCGGAGACGATGGCGATGGAG------GCGCA
GTGGCGGGTGGGCGACCCGGTGTACGGCTGCGCCGGGGTCATCAAC----------CGGCTGCAGGAGGAGATC-CTCGC
CACGCAGTGCGAGCTCGCCAGGACCAGGGCGCAGCTCGCCAT------------------CGTCGTCGCGCACGGCGC--
-----------------------GCAGC----------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr4D_831
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CCGTTAAGCTTTGCCATGTTTACACCTGACGTAGCCGTTGGTGTTGCCATTTCCAGCGC-CCCCCAAATCCCACCATCC-
--------------TATATAAGCATGCGCCC------------CGAAATCTTCCA----------GAGATCCCACGAGCT
CGCGCCAGGATCTAGCAC----TAGATCGC----CATGTCGA---------CCGCCGGC------GA---CGTGGAGG--
----------TGGAAGTGCACGAGGAAGACCGGGAA-GGCGGCGGCA--G---TAACCCGGGGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCGGTGCGCCCACGACTGCGTGCTCGCCCCCTACTTCCCGGCGTGGCAGCCC-CAC
CGCTACGCCTCCGTCCACCGGGTCTTCGGCGCCAGCAACGTCGCCAGGTTGCTTCAGG-------TACGTGACCTCTGGT
AATAGATCATTCCGGCCGCCATTGACAAACCGTCAGCCAGTTCGTGC------TTGCATGGTTCGATATTTGAATTGGGT
TGCCACTTT-----GTAGAGCTTGCCGGTCGGTGAGAGAGCTCAGGCGGCGGAGGCGATGGCGATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTACGGATGCGCCGGGATCATCAGC----------CGGCTGCAGGAGGAGATT-CCGGC
CACGCAGTGCGAGCTCGCCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCCGCGCACGGTGC--
-----------------------GCAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCA------------CA---GCGAGA
------CGACGGCCACCGCGTCCCCGTCACGCAGATGCAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr5A_976
--------------------------------------------------------------------------------
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--CACCAGGATCTAGAAC----TAGATCAT----CACGTCGA---------CAACCGGC------AA---CGTGGA----
--------------AATGCACGAGGAAGACCAGGCA-GGCGG---CAA-G---TAACCCGGGGAGG------------TG
CGCGGCATGCAAGTACCTGTGTCGGCGGTGCGTCCT-GACTGTGTGCTCGCCCT----------GCGTCGCAA-CCCCAC
CGCTGCACCACCGTCCACCGGGTCTTCGGCGCCAGCAAAGTCGCGAGGTTGCTCGAGG-------TACATGACCTCTGGT
AATCAATCGTTCCGGCCGCCATTGACAAACCATCAGCTAGTTCGTGC------TTGCATGGTTCGACATTTAAGCTTGGT
TGCCAC-TT-----GCAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCAAAGATGATGGCGATGGAGGCGCAGGCACA
GTGGCGGGTGGAGGACCCGGTGTACGGATGCGCCGAGATCATCCGC----------CAGCTGCAGGAGGAGATTTCAGCC
CACGCAGTGCGATCTCACCAAGACGTGGGCGTAGCTCGCGAT------------------TGTCCCCGCGCACGGTGC--
-----------------------GCAGCTGCAGGGTTCCACGACTGCTCTTCCACCGTCGCA---GCCACA----CGAGA
------CGACGGCCACCGTGTTCCCGACGTGCAGATGCAAGCCAAGGGCAGGGAGAGGCAGTGCTGTTGCTTGACCCAGA
TGACGGCCACCGTGTCGCCATCACGCAGATGCAGGGACTGGGAGAGGCGCTTGACCTGCCCGGATGACGGCCACCGCGTC
CCCGTCGAGCAGAGGTAGGGG-CAGGGAGAAGCGGTGACGTTGCTTGACCCGGATGA-----------------------
--------------------------------------------------------------------------------
---------------------------------------GTTCTG-GAACTCGACGGGCTCTGAGCTCTGATCAATCAAG
CGCGTACG--TGC-----ACCCACGCT-GGGGAAAATGCCAGGGCGATCGATCGCGGCATTGGGCCTTTTACCACT---A
AAGTTGATAATTGATGAATGAATAATGTCATGTTGCAATGATTTACAGTCAACCCTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr1D_976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CACCAGGATCTAGCAC----CAGATCAT----CACGTCGA---------CCACCGGC------GA---CGTGGA----
--------------AATGCACGAGGAAGACCAGGGA-GGCGG---CA--G---TAACCGGGGGAGG------------TG
CGCGGCGTGCAAGTACCTGCGCCGGCAGTGCGCCCCCGACTGCGTGCTCACCCCCTACTTCCTGGCGTCGCAACCC-CAC
CGCTATGCCGCCGTCCTCCGAGTCTTTGGCGCCAGCAAAGTCGCGAGGTTTCTCGAGGATCGAGGTATGTGACCTCTGGT
AATCAATCGTTATGGCCGCCATTGACAAACCATCAGCTAGTTTGTGC------TTGCATGGTTCGACATTTAAACTTGGT
TGCCAC-TT-----GTAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCGGAGACGATGGCAATGGAG------GCGCA
GTGGCGGGTGGAGGACCCGGTGTACGGATGCGCCGGGATCATCAGC----------CAGCTGCAGGAGGAGATT-CAGCC
AACGCAGTGCGAGCTCGCCAGGACGCGAGCGCAGCTCGCCAT------------------CGTCCCCGTGCACGGTGC--
-----------------------GCAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCGCCGCA---GCCGCA---GCGAGA
------CGAGGGCCACCGCGTCCCCGTCGCGCAGATGCAAGGCCAA----------------------------------
--------------------------------------------------------------------------------
-------------------GGGCAAGGAAAGGCGGTGTCGTTGCTTGACCCGGACGACGGCCACCGCGTCGCTGTCGCGC
AGATGCAGGGGCAGGGAGAGGCGGTGTCGTTGCTTGACCGGCCCGGACGACGGCCATCGCGTCCCCGTCGCGCAAAGGCA
GGGGCAGGGAGAGGCGGTGACGTTGCTGGACCCGGATGAGTTCCG-GAACTCGACGGGCTCTGAGCTCTGATCGATCAAG
CGCGTACG--TGC-----ATCCACGCTGGGGGAAAATGCCAGGGCGATCGATGGCGGCATTGGGCTTTTTACCACT---G
AAGTTGATAATTGATGAATAAATAATGTCGTGTTGCAATGATTTACACTCAACCTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr1B_976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CACCAGGATCTAGCAC----TAGATCAT----CACGTCAA---------CCACCGGC------GA---CGTGGA----
--------------AATGCACGAGGAAGACCAGGGA-GCGAC-----A-G---TAACCCGGGGAGG------------TG
CGTGGCGTGCAAGTACCTGCGCCGGCGGTGCACCCCCAACTGCGTGCTCACCCCCTACTTCCCGGCGTCGCAACCCTCAC
CGCTACGCCGCCGTCCACCTGGCCTTTGGCGCCAGCAAAGTCGCGAGGCTGCTCGAGGATCGAGGTACGTGACCTCTGGT
AATCAATCGTTCTGGCCGCCATTGACAAACCATCAGCTAGTTCGTGC------TTGCATGGTTCGACATTTAAACTTGGT
TGCCAC-TT-----GTAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCGTAGACGATGGCAATGGAG------GTGCA
GTGGCTGGTGGAGGACCCGGTGTATGGATGCGACGGGATCATCAGC----------CAGCTGCAGGAGGAGATT-CAGCC
AACGCAGTGCGAGCTCACCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCCGTGCACGGTGC--
-----------------------ACAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCGCCGCA---GCCGCA---GTGAGA
------CGACGGCCACCGCGTCCCCGTCGCGCAGATGCAAGGCCAA----------------------------------
--------------------------------------------------------------------------------
------------------GGG-CAGGGAAAGGCGGTGCCGTTGCTTGACC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr3B_976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CACCAGGATCTAGCAC----TAGATCAT----CACGTCGA---------CCACCGGC------AA---CGTGGA----
--------------AATGCACGAGGAAGACCAGGGACGCGGC-----A-G---TAACCCGGGGAGG------------TG
CATGGCGTGCAAGTACCTGCGCCGGCGGTGCGCTCCCAACTGCGTGCTCACCCTCTACTTCCCGGCATCGCAACCCTCAC
CGCTACGCCGCCGTCCACCTGGCCTTTGGCGCCATCAAAGTCGCATGGTTGCTCGAGGATCGAGGTACGTGACCTCTGGT
AATCAATCGTTCTTGCCGCCATTGACAAACCATCAGCTAGTTCGTGC------TTGCATGGTTCGACATTTAAACTTGGT
TGCCAC-TT-----GTAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCGGAGACGATGGTAATGGAG------GCGCA
GTGGCTGGTGGAGGGCCCGGTGTACGGATGCGACGGGATCATCAAC----------CAGCTGCAGGAGGAGATT-CAGCC
AACGCAGTGCAAGCTCACCAGGACGCGGGCGCAGCTCTCCAT------------------CGTCCTCGTGCACGGTGC--
-----------------------ATAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCGCCGCA---GCCGCA---GCGAGA
------CGACGGCCACCGCGTCCTTGTCGCGCAGATGCAAGGCCAA----------------------------------
--------------------------------------------------------------------------------
------------------GGG-CATGGAAAGGCAGTGCCGTTGCTTGACCCGGACGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr5B_976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CACCAGGATCTAGCAC----TAGATTAT----CACGTCAA---------CCACCGGC------GA---CAGGGA----
--------------AATGCACGAGGAAGACCAGGGAGGCGGC-----A-G---TAACCCGGGGAGG------------TG
CATGGCGTGCAAGTACCTGCGCAGGAGGTGCGCCCCCGACTGCATGCTCACCTCCTACTTCCCGGTGTCGCAACCCTCAC
CGCTACGTCGCCGTCCACCTGGCCTTTGGCGCCAGCAAAGTCGCAAGGTTGCTCGAGGATCAAGCTACATGACCTCTGGT
AATCAATCGTTTCAGCCGCCATTGACAAACCATCAGCTAGTTCGTGC------TA-CATGGTTCGACATTTAAACTTGGT
TGCCAC-TT-----GTAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCGGCGGAGACGATGGCAATGGAG------GCGCA
GTGGCTGGTGGAGGACCCGGTGTACGGATGTGACGGGATCATCAGC----------CAGCTGCAGGAGGAG-TT-CAGCC
AACGCAGTGCAAGCTCACCAGGACGCGGGCGCAGCTCGCCAT------------------CGTCCCTGTGCACGGTGC--
-----------------------ATAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCGCCGCA---GCCGCA---GCGAGA
------CAACGGCCCCCGCGTCCCCGTCGCGTAGATGCAAGGCCAA----------------------------------
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-------------------GG-CAGGGAAAGGCGGTGCCATTGCTTGACCCGGACGA-----------------------
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>chr3A_978
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----CCAGGATCTAGCAC----TAGATCAT----CACGTCGA---------CAACCGGC------AA---CGTGGA----
--------------AATGCACGAGGAAGACCAGGCAGGCGGC-----AAG---TAACCCGGGGAGG------------TG
CGCGGTGTGCAAGTACCTGTGCCGGCGGTCCGCCCCCGACTGTGTGCTCGCCCC----------GTGTCGCAACCC-CAC
CACTACACCACCGTCCACCGGGTCTTCGGCGCCAGCAAAGTCGCGAGGTTGCTCGAGG-------TACGTGACCTCTGGT
AATCAATCATTCTGGCCGCCATTGACAAACCATCAGCTAGTTCGTTC------TTGCATGGTTCGACATTCAAGCTTAGT
TGCCAC-TT-----GCAGAGCTTGCCGGTGGATGAGAGAGCTCAGGCAGCGGAGACGATGGCGATGGAGGCGCATGCGCA
GTGGCGGGTGGAGGACCCGGTGTACGGATGTGCCGGGATCATCAGC----------CAGCTGCAGGAGGAGATTTCAGCC
CACGCAGTGCGAGCTCGCCAAGACGTGGGCGCAGCTCGCGAT------------------CGTCCCCGCGCACAGTGC--
-----------------------GCAGCTGCAGGGTTCCACGGCTGCTCTTCCGCCGCCGCA---GCTGCA----CGAGA
------TGATGGCCATCGTGTTCCCGACACGCAGATGT-AGGCCAA----------------------------------
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------------------GGG-CAGGGAGAGGCGGTGTCGTTGCTTGACCC-----------------------------
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>SNPs
SSS-----------S-S-------S--S--------SS--S-SSSS------------S---------------S-----
---S---------------S-S----------------------------S------S------S--------------S
-----------------------------S----------------------------SS--------------------
--------S---------------------------S--------S-----------S----------S---------SS
-------S----------S----SS----------S--SS-------S------------------------SS-S--S-
--------------------------------------------------------------------------------
S--------------------------SSSS-----S---S----------S--------------S-------------
--------------SSS------S---S---S----S-S-------------------SS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------------SSSSSSSSS---------------------------------SSSSS--------
S-----S-----------S--------S-----------------------------------------------S----
-S-----------------S----------------------S-------------------------------------
-------------------------------------------S---------S-----S--------------------
-----------------------------S---------------S---------S--SSS------S------------
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---------------------------S----------------------------------------------------
--------------------------------S----------------------------S------------------
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-----------------------------------------------------------------------SSS------
------------------------SS--S---------------------------------------------------
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-----------------------S--------------------------------------------------------
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------------------------------------------S---------------S---------------------
-----------------S-----S-----------------------S------S---------------------SSS-
-----------------------------------------------SS---------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--SS-------S-S--SSSS-S--S--SSSS-SS---S--SSSSSSSSSSSSSSSS-----
----------------------------------------------------------S------SSS------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S-------------------S---------------------
------------------------------------------------------------SSS-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
S--------------------------------S-------------------S-------------S------------
S-------S-------------S-----------S------------------------------
>forward_37
-----------------TGGGGAACGAGGATTTTGCA-------------------------------------------
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>reverse_2451
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--------------------------------------------------AATTCTGAAACGCGCATGCA----------
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