>input_sequence_73161
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------------------------------ATGCAGGGTCAGGATTGGTGCTGCTACCAGGTGATTTAACAAAACTAAAT
TATAATAATCGACTGTTCTGCAATTTCAATTAGCTGTTGAACACACGTTTGATCGTTCAATCCATATACTCTTTTGCAGA
CAAGGCCGGAAGGTTACATGGATCAGCGCATCTGGATGTGGCACCCTTTGATGGCAGCAACCGCACATTCGGTAAGTGAT
GATGCGTGCATATCCTATCGCAAGTTATTTGATGCAGTAGCATGACTGTGTTACAGTTTGGATAATACATGGTCACATTG
TTGCAGCTGTTCGCTCGTTCAACAGTTACCAATGAAGATGATACACCGAATGCAAATGAAGGGGCCACGCCAAATGGCTC
GGAGAATCAAGAAGCTGGACCCAACGGTAGTGCGCTGGGTACTACTGTTCAAGATCACAGCCAAGTTGCCGGCA----GG
GATGTGATAGAGTTAGAGGGTACAGAGCCAAATGCTGACGCGCTAACTGTCGTCACAGTAGATGCCAATCAAGTAGTTCA
ACCCAATGGGAGTGCGTTGGATAATAGCGGTCAAGATGGCGTTCAAGTTAGCAGCACAGATGTGATAGTGTTAGAAGATA
CCGAGCCAAAATGCTGGCACACTGACTATCATTGA---------------------------------------------
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>chr6D_1_TraesCS6D01G053700
AGCAATATTAGATAGGTACGGGACACGGAGCAATTGATCCCGAGCACACAGGCTCTCGTAATCTGTTCCGCTCGATACGT
GTTTGTGATTCGTTTTTCGTAGCACATGGAGGC-----------------------------------------------
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-----------------------------------------------------------------------------ATG
GAGCTGTCTCCTACCTCTGCCGGCTGCGGGTCTGGTTCTATCGTCTCGGCGGCGGAACCACGA-----------------
--------GCGTGTCGCCGATGGAACCTGGATCTCTTGAGGGTTACGGTCTCTCGGCTCCACCGCCCAATGGAGTTCTTG
TTGCAGCCGGTCAACATGTGCGGATCTGCCCGTGGATTTTGCTTGTTCGTCCGTGATTTGG------GTTTGGAGTTACT
GAAGATCTAACTTTTGGGTGTCTGTGTGTGTGTGCAGCAGAACTCTCATAGAGGAAGTAACTGACAGAGAGACACCCATG
GCGCCTCTCCATTATCCTGTTTTGTCGCCGCCGGGCGTCGAAGTGCCAGCTGAGAGTGCCTCTAGTGCAGACACGAAGAT
GTGTGCGGCGGCGGCGGAGAGGCAGGGAGTGCAGATAAGGCGCAGGTATCTGAACACTCCATAGAGCACATTGATCCAAA
GATTCCTGGCTGGACACGAAGGTATTCAGTTTAGTCCCCCCCCCCACACACACACACACACTTTG---------------
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------------------------------------------------GTAGACATGAAAATCGGTTGCCTGTGTGACTA
GATGGGGCTACAGATTCAGTCTA---------CGATAATTGTTGTAAAGATAGCTTAGATTCTCATGCTTGGAATGTGTC
CGTTTCAAGAAAAGAAATGAATTGCAGAAGTGAATACCATATAGCCAGGATGGTACTGCATTTGAGCTTTTAACTGTCCA
TGATA---GTAAATATGCGGTACCTCTTAATGCTTAAGTGTGGCATATGTTTCTGCGACACTTCTTGATGATGCATGAAA
AAAGGAAGAGGCATTCTGTAATTTTTATTTGGTGAATTTTTTTATTTGTATTACTGAATTTATTGTGTGGTGACTGGTGA
ATAATTGTGCACAAACACTTTTGGAAACAAATGCAGGGTCAGGATTGGTGCTGCTACCAGGTGATTTAACAAAACTAAAT
TATAATAATCGACTGTTCTGCAATTTCAATTAGCTGTTGAACACACGTTTGATCGTTCAATCCATATACTCTTTTGCAGA
CAAGGCCGGAAGGTTACATGGATCAGCGCATCTGGATGTGGCACCCTTTGATGGCAGCAACCGCACATTCGGTAAGTGAT
GATGCGTGCATATCCTATCGCAAGTTATTTGATGCAGTAGCATGACTGTGTTACAGTTTGGATAATACATGGTCACATTG
TTGCAGCTGTTCGCTCGTTCAACAGTTACCAATGAAGATGATACACCGAATGCAAATGAAGGGGCCACGCCAAATGGCTC
GGAGAATCAAGAAGCTGGACCCAACGGTAGTGCGCTGGGTACTACTGTTCAAGATCACAGCCAAGTTGCCGGCA----GG
GATGTGATAGAGTTAGAGGGTACAGAGCCAAATGCTGACGCGCTAACTGTCGTCACAGTAGATGCCAATCAAGTAGTTCA
ACCCAATGGGAGTGCGTTGGATAATAGCGGTCAAGATGGCGTTCAAGTTAGCAGCACAGATGTGATAGTGTTAGAAGATA
CCGAGCCAAAATGCTGGCACACTGACTATCATTGAGATAGATGCGAATCAACTTATCAGCCAAGTTGGTTTACACAATGC
AGACAGGGATCCAAGTGCTGGCACACTGACTTTTAGGATGTAAAATTGTCCTCTGAACCGAGCAATGAGTGAACTGGATA
CCTATGTTGAATATGGTTAGCATAGAAATATTCATGATGTACCATCATTTGCTAAAGAAAATACTTAGAGCATGTACCTC
ATTACTTTCACTTGATCTAGTTCTGATGCGGTTCCTACAATGCAATTCCTGATGATGGGGATGCGGGATACGACACTGAC
TCAGAAGATGATCCACAGATACTTGCAGCAATAGGTAAAACATGATAAATGTGTGTCATAATTCAGGCATGACATGCTGT
TTTCTTGTTCTTGCAATATTTGATGTTGATACATAAGCATCATTGGCCGATCTCCTGTCCTACGGATGAAGATGATGCAA
ACATGGTACGGGTGGGGTGGCAATGGCTCAGCTGGGATAGGATGCAGCAGCAGATCTGGAGGAGGGAATCAGTGGATGGA
GTCGATTAGAGCATCTACAACCAGACGCCTCAAACCATCTCTCATATGCTCACGGACGCGCCTGGTCATTGACTAGACAG
GAGAGAGAAGGAAAAAATGACCCAACCGGACCCATCATATCTTCCCTATATGTCCGGGCTGTCCGTGAACCATCATATCC
ATCTCAAATATGGGGAGGATATAAGGGCTCGCCGACACGCCCGGGCGCGCCGGGGCGATCCTCCACATAGGACGTGGCCC
CATCCCGGACCATCTTTTCTCTTTTTATTTATTCTTTTCTCTCTCTCTCTTCATCTTCACCAATCACGTGCAAGTGACCG
GACATATGAGGAAGAAAATAAGGATTGTGGTTGCGCGGATGGATAAATTAGATATCAAAATGGACACGTCCGGTCAGTGA
CCGGGCGCGTCCGCGGGCATTTGATCGGTCGAATTAGAGGTACATGACTGAAGATGCTCTTAGAGCAACTCCAAC
>chr4B_21
--------------------GGACGCGGAGCAATTGATCCCGAGCACACGGGCTCTCGTAATCTGTTCCGCTCGATACGT
GTCTGTGATTCGTTTTTCGTGGCACACGTGACTGCTGCAGGGCCCAGCTGACGAATAGAAGTGGGAATATAATGGCAATA
TTTTGCCGGACGGTGAGCCAGGACGGCATGTACATCCGACGCCGTCGCAAGATCGCGTCAGAGCCGTGGCTCGGGTCGTC
ATCGACGTCCTGATCCGTGGACCAGATTACGTTAACGACGTCATTTGGTTGGAGTAAATGCAGATATGGGTGGGTGGATG
GAGCTGTCTCGTACCTCTGCCGGCTGCGGGTCTGGTTCTATCGTCTCGGCGGCGGAACCACGATCTCTTTTTGGGTAGTG
TCTTGCGAGCGTGTCGCCGGTGGAACCTGGATCTCTTGAGGGTTACGGTCTCTCGGCTCCACCGCCCAATGGAGTTCTTG
TTGCAGCCGGTCAACATGTGCGGATCTGCCCGTGGATTTTGCTTGTTCGTCCGTGATTTTTGGGTTTGTTTGGAGTTACT
GAAGATCTAACTTTTGGGTGTCTGTGT--GTGTGCAGCAGAACTCTCAGAGAGGAAGTAACTGACAGAGAGAGACCCATG
GCGCCTCTCCATTATCCTGTTTTGTCGCCGCCGGGCGTCCAAGTGCCAGCTGAGAGTGCCTCTAGTGCAGACACGAAGAT
GTGTGCGGCGGCGGCGGAGAGGCAGGGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGACATGAAAATCGGTTGCCTGTGTGACTA
GATGGGGCTACAGATTCAGTCTAAATTTAGCACGATAATTGTGGTAAAGATAGCTTAGATTCTCATGCTTGGAATGTGTC
CGTTTCAAGAAAAGAAATGAATTGCAGAAGTGAATACCATATAGCCAGGATGGTACTGCATTTGAGCTTTTAACTGTCCA
TGATACTAGTAAATATGCGGTACCTCTTAATGCTTAAGTGTGGCATATGTTTCTGCGACACTTCTTGATGATGCATCAAA
AAAGGAAGAGGCATTCTGTAATTTTTATTTGGTGAATTTTTTTATTTGTATTACTGAATTTATTGTGTGGTGACTGGTGA
ATAATTGTGCACAAACACTTTTGGAAACAAATGCAGGGTCAGGATTGGTGCTGCACCAGGAG------------------
TATAATAATCGACTGTTCTGCAATTTCAATTAGCTGTTGAACACACGTTTGATCGTTCAATCCATATACTCTTTTGCAGA
CAAGGCCGGAAGGTTACATGGAGCAGCGCATCTGGATGTGGCACCCTTTGATGGCAGCAACCGCACATTCGGTAAGTGAT
GATGCGTGCATATCCTATTGCAAGTTATTTGATGCAGTAGCATGACTGTGTTACAGTTTGGATAATACATGGTCACATTG
TTGCAGCTGTTCGCTCGTTCAACAGTTACTAATGAAGATGATACACCGAATGCAAATGAAGGGGCCACGCCAAATGGTCC
GGAGAATCAAGAAGCTGGACCCAGCGGTAGTGCGCTGGGTACTACCATTCAAGATCACAGCCAAGTTGCCGGCAGGCAGG
GATGTGATAGAGTTAGAGGGTACAGAGCCAAATGCTGATGCGCTAACTGTCGTCACAGTAGATGCCAATCAAGTAGTTCA
ACCCAATGGGAGTGCGTTGGATAATAGCGGTCAAGATGGCGTTCAAGTTAGCAGCACAGATGTGATAGTGTTAGAAGATA
CCGAGCCAAAATGCTGGCACACGGACTATCATCGAGATAGATGCGAATCAACTTATCAGCCAAGTTGGTTTACACAATGC
AGACAGGGATCCAAGTGCTGGCACACTGACTTTTAGGATGTAAAATTGTCCTCTGAACCGAGCAATGAGTGAACTGGATA
CCTATGTTGAATATGGTTAGCATAGAAATATTCATGATGTACCATCATTTGCTAAAAAAAATACTTAGAGCATGTACCTC
ATTACTTTCACTTGATCTAGTTCTGATGTGGTTCTTACAATGCAATTCCTGATGATGGGGATGCGGGGTACGACACTGAC
TCAGAAGATGATCCACAGATACTTGCAGCAATAGGTAAAACATGATAAATGTGTGTCATAATTCAGGCATGACATGCTGT
TTTCTTGTTCTTGCAATATTTGATGCTGATACATAAGCATCATTGGCTGATCTCCTGTCCTACGGATGAAGATGATGCAG
ACATGGTACGGGTGGGGTGGCTCGGCTGGG-------TAGGATGCAGCAGCAGATCTGGAGGAGGGGATCAGTGGATGGA
GTCGATTAGAGCATCTACAACCAGGCGGCTC-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSS----S------------------------S------------------------------
--S-----------------S-----S-SSSSS-----------------------------------------------
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----------S---------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------SS-------------------
---------------------------SS-------------------S-----------------------S-------
---------------------------------------S----------------------------------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
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------------------------------------------S-------------------------------------
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----------------------------------------------------------------------------S---
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------------------------------------------------------SS-SS-SSSSSSSSSSSSSSSSSSSS
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----------------------S---------------------------------------------------------
------------------S-------------------------------------------------------------
-----------------------------S-----------------------------------------------SS-
-----------------------S---------------------SS---------------------------------
--------------------------------------S-----------------------------------------
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----------------------S---------S-----------------------------------------------
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--------------------------------------------------------S-----------------------
----------------------------S-----S--------------------------------S------------
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-------------------------S---------------------S-------------------------------S
---------------------SSS-SSSSSSSSSSSS-----------------------------S-------------
------------------------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_818
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------------------------------------------------------------------------------AA
GATTCCTGGCTGGACACG--------------------------------------------------------------
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>reverse_2760
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---------------------------------------TCTCATATGCTCACGGACGC---------------------
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