>input_sequence_73156
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-------------------------------------------------------------ATGGCGGAGACGGAGTACC
GCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCCTC
GACGCCAAGGTAACCCTAA------CCCCCCTTCC----CCTCCCAGATCCGTTCGAATTTCGCGTCGTCGGCGC-----
------TAGATCTGGCCCGATCTGGTGGTTTCTGTGGCGGATCTGA--------------------CCGCGTCTGG--CG
GGTTTTGTTCTGTGCGTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGCGGGTTCGGCTTCGTCACG
TTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGCTCGGGCGGAGGGGGCGGCGGCGGCGGCGGCTACGGCGGCCAGCGCGGCGGTGGCGGAGGCT
ACGGCGGCGGCGGCGGCTACGGAGGCGGCGGCGGCGGCTACGGCGGCCAG---------------GGCGGTGGCGGCTAC
GGCGGCCAGCGCG---------------------------------------------------GTGGCGGCGGCGGCTA
CGGCGGCGGCGGCGGC---------TACGGCGGT---GGTGGCGGCTACGGCGGCCAGCGCGGCGGTGGCGGCGGCGACT
CCGGCGGCCAGTGGAGGAACTGA---------------------------------------------------------
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>chr5B_1_TraesCS5B01G013200
CGCGCCTATCTACACACGTTTTGAATTACCTCACTGACTGTTAATTTTCCGCACTAGAAATTTCACATCCACACTATCAA
GGAAGCAAACCGATGATTTTGACTGGAGTTACATGGTGGCTCCAACGAGCAAGGCGTACACTCCACGCTTTCATGAGCTC
CTTCCATCCCACAATAAGTATCGCTCACACGAGTGTATTTACATGTCGAAGGTACATCCATTTGAACAACACTTAATAAC
CCAAGTTCGGATTGAGCGCTGCTACACATACGATGGTCTTTGTCCGATTAGTGTCCAATGGTACACACCCAACAATCCAT
TACTTAGAACAAAATCACAACACCTACTGGACCGATAGCGGGACAGAAATCAGGCACATGAGTGTCGTACGCATGGAGGT
TTCGATCTTGATTTGCCCCCTGTGTGGGGGGTGGCGGGAGGGGGCGATGAGGTTTTCG---AAAAATATAAATTTCACCT
TGCAGCTTCATTATTTTTAAT-----------------------------------------------------------
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--------------------------------------------------------------------TATTTGTGCGCA
CATCTAGAAAGATCGGG-------TTGCAGCTCATATATACCCCTGAATGATTCTCTCAAGATTTGATGCGGTTAAACTT
CAAAAAGAAAAAGATTTGATGCGGTTATTATTATAGGAAAGAAAAAAGCAAACCCAAATTTTTCTTTGCATCATTGTCCT
ACTAGGGTTACTAGTTGTTATAGGAGGAAAAAGCAAGCAATTCAGATTTTTCCTTGGTGCTGCCTTGGGAAAGAAGATTC
GAGGCGTG------------------------------------------------------------------------
----------------CGCGTATTCCAAATCCCGAGAGCCCGCATCCATCC-----------TCGCTGACGCGTGGGCCC
CGCCGCGCGCGTGATGCGATCCGGGCGGCCGCCCGCCGCTATAAATGCGTGCCCGCGGCGGGGCAGCGTCCTCCTCATCG
CTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA---------------GAGTAG
CTAGCCTAGTCTAGGGTTTCCGTAG----------AGAGGAAGGGAGAGGGAGATCCATCCATGGCGGAGACGGAGTACC
GCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCCTC
GACGCCAAGGTAACCCTAA------CCCCCCTTCC----CCTCCCAGATCCGTTCGAATTTCGCGTCGTCGGCGC-----
------TAGATCTGGCCCGATCTGGTGGTTTCTGTGGCGGATCTGA--------------------CCGCGTCTGG--CG
GGTTTTGTTCTGTGCGTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGCGGGTTCGGCTTCGTCACG
TTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGCTCGGGCGGAGGGGGCGGCGGCGGCGGCGGCTACGGCGGCCAGCGCGGCGGTGGCGGAGGCT
ACGGCGGCGGCGGCGGCTACGGAGGCGGCGGCGGCGGCTACGGCGGCCAG---------------GGCGGTGGCGGCTAC
GGCGGCCAGCGCG---------------------------------------------------GTGGCGGCGGCGGCTA
CGGCGGCGGCGGCGGC---------TACGGCGGT---GGTGGCGGCTACGGCGGCCAGCGCGGCGGTGGCGGCGGCGACT
CCGGCGGCCAGTGGAGGAACTGAGCCTCGAATCTC-CCAGTTATCGATCTATCTACCGTGTCGTCGTCGTCGTCTTCGTT
AGCAAGTTATCTTCGGT------GTCGTCGTGTTCCTGTGTCAGTCTGAGTC--GTCGTGTGTGT-------------GG
TGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACATGTGTT
ACTATCTTTCAGTC--GGTCGGTCGGTCGGTCAGTCGGTGATGCAGCAATCCCCTTCTGTCATGGATTGGGATGTGATGT
TGGAATATCCTATGTTTGAACA-AGTTTAAATGGATGAAGAAAATGCAAGT---CATAGCTGCGAAATATCCTCTCT---
---------C-TTTGTTCCTTAAATTTCTCTTGTTCTGAAGCATCCATTCAAC-TTTCTTCAAGCTATAAGGA-------
----TTGAATTGCTCTGTGAAGCATGCA------------------------AAA------------CTTGCTGCCAATT
CAGCATAGTCTTTCACATAATCTTGATCTGATGATGTGCTACATTGCTTTGCTGATCTGTGATTACTAGCGATTTCAACT
TCATGTTCCCGAGTTGCTTAGAAATAAAACTTGATCTGATTAATGGAACTTCAATCCAAGGATCTTTTGTGTTCTGTGCT
GAATAAGATGCAAAACTTGCCGTCTCCAACGCTATCCAACTGAG-------CAAGGAGATTGCATAACAAAAGTG---TC
ATCTATGGTTTGGTTCAAACTT-ATCAAATTACATACATGTTACAAGGCA--GCCAAAGCAGCAGCATGCCTATGGCTGT
GTAACCAATAACAGTGGTGCATATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGAGGACATAGATGCGGGAGGC
GATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCCCCGGTGTAGGCGCTGCAGCCGACGATCTTCCAGTGCC
GGTCCTTGTTCATCGCTTCAAGGTTCAGAACCTGGATCCAAAAACTCAACTCGGTTACCATCGAACTCAGAAGACACAAC
TGAAC
>chr5D_239
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------------------------------------------------------------------------------AC
CTAACTTTGGATTGAGCTCTGCTACACATAAGATGTTCTTTGTCCGATTAGTGTCCAATGGTACACATCCAACCATCCAT
TACTTAGAACAAAATCACAAAACGTACTGGATAGATTGCTGGACAGAAATCAGACACATGAGTGTGGTACGCATGGAGGT
TACAATTTTGATTTGACCCATGTAGGGGCAGA------------CGACGAGGTTTTTCAAAAAAAAGAAAAAATTTACCT
TGCAACGTAAATAAAAAAAAGGGCCGCTCTACGCGTCGGCCGTGGATCTTTCTAAAAGATCCGTCGCCTCGGCAACCGCC
AGATGTACAACTATCCAACGTTCAATGTTGTTTCCACCATTGCATCTAGGACAGTGTTGCAGGATACTTTGCAAAAAAAA
AAAAACCATGTTAAATCTTTTGAATATAGGTGATGATGCAGGTGTTTTTTCTTCACTAATTTTTCAACATGGGCGTTGTT
GCAGAAAGAAAATGCAACACAGATAATGTTGCAGAAAATATCTGCAGTATTTTTTCGTCTTTATTTTTTGCAACATGGTT
GTTGTTGTTGCGGAAGGCAATTTTACAACACAGATGGTGTTGCAGAGAGATATACGCAAAAGGACATGCGTACACGCGTC
ACACAGAGAAGGCAGCGGATCGCTCGCGTGTGCGATCCGTCGCCTGAAGGTAAGCATTTCTAGAAAGATATTTGTGCACA
CATCTAGAAAGATTAGTGGGATTATTGCAGCTC----ATACCCGGGAATAATTTTCTCAAGATTTGATGTGGTCATTTAT
A-----------------------------------GAAAAAAAAAAGCAAACTCGAAATTTTCCTG----CATTGTCCT
AGGGTTAGTTACAGGGGAAAGCA---------------AATTCAGATC-TTTCTTCCTGTTGCCTTGGACAAGAAGATTC
GAGGCGTGCCGCACCGCGGTGTGGGGCGCGCGGCCCGCGTGCGCGTAGCCGGGGCGAGAAATATCTCGCGGCCACCCACT
CCCACTTGGCCGGCCCCGCATATTCCAAATCCCGAGACCCGCATCCTCACCCACCCGCCCCGTCGCTGACGCGTGGGCCC
CGCCGTGCGCGTGATGCGATCCGGGCGGCCACCTACCGCTATAAATCTCGCCCCACGGCGGGGCAGCGTCCTCCTCATCG
CTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTCCGA---------------GAGTAG
CTAGCCTAGTCTAGGGTTTCCGTAGTTCGGAGAGGAGAGAAAGGGAGAG--------ATCCATGGCGGAGACGGAGTACC
GCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCCTC
GACGCCAAGGTAACC--AA------CCAACCAA-------CTCCCAGATCCGTTGGAATTTCGCGTCCGATTTGCTGTCC
GTGTGGTAGATCTGTCCCGATCTTG-GGTTTGTGTGGTGGATCTGA--------------------CCGGATCTGG--TG
GTTTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGCAGGTCCCGTGGCTTCGGCTTCGTCACG
TTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGGTCCGGCGGTGGGGGCGGCGGCGG---CGGCTACGGCGGCCAGCGCGGCGGTAGCGGAGGCT
ACGGC------------------GGCGGCGGCGGTGGCTACGGCGGCCAG---------------GGCGGTGGCGGCTAC
GGCCAGGGAGGCGGTGGCGGCTACGGCCAG---------GGCGGTGGTGGCTACGGCGGCCAGCGCGGTGGCGGCGGCTA
CGGCGGCGG------CGGCGGCGGCTACGGCGGCGGCGGTGGTGGCTACGGCGGCCAGCG------TGGTGGCGGTGACT
CCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCATC------TCGTCGTCTTCGTC
AGCAAGTTATCTTCAGTTCCTGTGTCA------------GTCAGTCTGAGTC--GTCGTGTGTGTCGTTGAGTCCTGTGG
TGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACATGTGT-
--TATCTTTCAGTCTTGGTCGGTCGGTC-----GTCGGTGATGCAGCAAT-CCCTTCTGTCATGGATTGGGATGTGATGT
TGGAATATCCTATGTTTGAACTCGGTTTAAATG---GAAGAAAATGCAAGTCGTCATAGCTGCGAAATATCCTCCTCTGT
GTCCTGATTATTTTTGTTCCTTTCTCTCTACTGTTCTGAAGCATCCATCGATC-TTTGCT---------------TAGAT
CTATTGAAATTGTTCTGTGAATCAGGAA------------------------AAAAAATATTCTAAACTTGCTGTCATTC
GGACTGATTGCGAG--------------------------CATCCATATTCTAATC------------------------
------------------------------------------------------------------------------CT
GCATAAGATGCAAAACTTGCTGTCACCATCTTTCACAACTGACACGGAGCACAAGGGAAGTGTAGAATAAAAATG---TC
ATTTATGGTTTGGTTCAAACTTGATCAGATTACATACAGATGCCATGAGATGGCCAAAGCAGCAGCATGCCTATGGCT--
----------------------------AAATGTCCAGAGAGTTTG-GTTGTTTCAGTCGAGGACATAGATGCGGGAGGC
GATGTCCTGAACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCCGTGTAGGCGCTGCAGCCGACAATCTTCCAGTGCC
GGTCCTTGTTCATCACTTCAAGATTCAGAACCTGAATCCAAAACTCAACTCCAGTTACCATCGAATTCAAAGAC------
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>chr5A_817
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------------GATGCGATCCGGGCGGCCACCCACCGCTATAAATGCGTGCCCCCGGCGGGGCAGCGTCCTCCTCATCG
CTCTCGGGGTTGGCTTCTCCTCCCCTTCCGGTTCGGGTTCTGGTTCGGTTCGGGTTCGGTTCGAGAGAGAGGCCGAGTAG
CTAGCCTAGTCTAGGGTTTCGGTAG----------AGAGGAAGT--GAG--------ATCCATGGCGGAGACGGAGTACC
GCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACAACAACCTCCAGCAGGCCTTCAGCCAGTACGGCGAGATCCTC
GACGCCAAGGTAACCGACCGACCAACCCCTGTCTCCGATCTGCGCCGATCCGTTCGAATTTCGCGTCGTGGGCT------
-----GTAGATCTGACCCGATCTGG-GGTTTGTGTGGCGGATCTGA--------------------CCGGATCTGGTGTG
GTGTTTGTGTTTT--GTGCGTGCGTGCAGATCATCAACGACCGCGAGACGGGGAGGTCCCGTGGGTTCGGCTTCGTCACG
TTCGGCAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAGGAGCTCGACGGGCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGCTCCGGCGGTGGGGGCGGCGGCGG---CGGCTACGGCGGCCAGCGCGGCGGTGGCGGAGGCT
ACGGC------------------GGCGGCGGTGGCGGCTACGGCGGCCAG---------------GGCGGCGGCGGCTAC
GGCCAGGGCGGCGGTGGCGGCTACGGCCAG---------GGCGGCGGTGGCTACGGCGGCCAGCGTGGTGGCGGCGGCTA
CGGCGGT---------------GGCTACGGCGGCGGCGGTGGCGGCTACGGCGGCCAGCG---------CGGCGGCGACT
CCGGCGGCCAGTGGAGGAACTGAGCGGCGGGGCCCTCCAGTTATCGATCTATCTACCATC------TCGTCGTCTTCGTC
AGCAAGTTATCTTCAGTGTCGTCGTCGTCGTGTTCCTGTGTCAGTCAGTCTTGAGTCGTGTGTGTCGTTCGGTCCTGTGG
TGTTTTTGATCGCGAGCTCGAGTGTCGCTCTGTCCGGGGTTAATTAGAGCTGGTTACGCGAGGAAGAAACAACATGTGT-
--TATCTTTCAGTC--GGTCGTGT--TC-----GTCGGTGATGCAGCAAT-CCCTTCTGTCATGGATTGGGATGTGATGT
TGGAAT--CCTATGTTTGAAGTCAGTTTAAATGGATGAAGAAAATGCAAGT---GATAGCTGCGAAATATCCTCCTATGT
GTCCTGATGC-TTTTATTCTTTTCTCTCTTTCGTTATGAAGCATCCATTATCTTTTTCTTCAAGCAAGCATATTGTAGAT
CTAGTGAAATGTTCTGAAGCATCCACCTTCTGTTTAAGCAACAGATCGCACCAAG------------CTTGCTGCCATTT
CAGTGAGTAATATAAAATTTAGACATTGCGATGTGCATCTCATCCACCTTCTGTTT------------------------
------------------------------------------------------------------------------AA
GCAACAGATCGCACCAACTGACGATTGCAGT----------ACGCAGAGCTCAATGAGAGTGCATAACAAAAGTTTCATC
ATCTATGGTTTGGTTCAAACTTGATCGGATTACATGAGGTAGCCG---------------------------------GT
GTAACCAATAACAGTAGTGCAGATGGCTAAATGTCCAGAGTTTGGTTGTTGTTTCAGTCGAGGACATAGATGCGGGAGGC
GATGTCCTGGACCAGCCAGTCGAAGCCCTGGAGCAGGCCGTCGCCTGTGTAGGCGCTGCAGCCGACGATCTTCCAGTGCC
GGTCCTTGTTCATCACTTCAAGATTCAGAACCTGGATCCAAAAACTCCACCCGGTTACCATCAAACTCGAAGAACACTAA
AC---
>chr4D_1000
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------------------------------------------------------------CATGGCGGACGTCGAGTACC
GCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATC
GACTCCAAGGTACCG--AT------CCCCCGTCTC----CTCCCCCGATCCGCCCGA-----------------------
------TAGATCTCTAAA-----------TTCGTAGGTGGATCTGTGGTGTTGTGCTTGCGGAACCCTGGATCTGA--CG
GGTTTGGTGTGTT--TTGGCG--GTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTTCGGGTTCGTCACC
TTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTT---CGGCGG-----------------------------
-CGGC------------------GGCGGCGGCGGCGGCTACGGCGGCCAGCGTCGTGAAGGAGGAGGCGGCGGCGGCTAC
GGCGGCGGCGGCGGTGGCTACGGAGGTGGCCGCAGCGGCGGCGGCGGTGGCTACGGCAGCCGTGAGGGCGGCGGCGGCTA
CGGCAGCGGCGGCGGCGGCGGCGGCTACGGCGGCA------------------------G---------CCGCGGCGGCT
CCGGCGGCGGCAACT-----------------------------------------------------------------
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>chr4A_1001
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-------------------------------------------------------------ATGGCGGACGTCGAGTACC
GCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCAGTCCCTCCAGAACGCCTTCTCCAAGTACGGCGACGTCATC
GACTCCAAGGTACCGTCC---------------CC----CTCCCCCGATCCGCCCGA-----------------------
------TAGATCTGTGAA-----------TTCG-AGATGGATCTGTGGTTTTTTGCTTGTGGA------GATCTGA--CC
GGTTTGGTGTGTT--TTGGCG--GTGCAGATCATCACTGACAGGGAGACGGGCCGTTCCCGCGGGTTCGGGTTCGTCACC
TTCGCGTCGGACGAGGCGATGCGCCAGGCGATCGAGGCCATGAACGGCCAGGACCTGGACGGCCGCAACATCACCGTCAA
CGAGGCCCAGTCCCGCCGCTCCGGCGGAGGCGGCGGCGGCTT---CA---G-----------------------------
-CGGC------------------GGAGGCGGTGGCGGCTACGGCGGCCAGCGCCGCGAGGGC---GGCGGCGGCGGCTAC
GGCGGCGGCGGCGGTGGCTACGGAGGTGGCCGCAGCGGCGGCGGCGGTGGCTACGGCAGCCGTGAGGGCGGCGGCGGCTA
CGGCGGCGG------CGGCGGCGGCTACGGCGGCA------------------------G---------CCGCGGCGGCT
CCGGCGGC------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S--S--S---------S------------S----S-------------------------------S-----S------
--------------------S--S-------SS---S--S-------------S-----------S--------------
-S-S--S--------S---S---SS---SS-SSSSSSSSSSSSS---S--------SS--------S-S---S--S----
----S-S-S-S--SSSSS--S-----------------------------------------------------------
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-----------------------------------------------------------------------------S--
-------------SS-S----------------SSSS------SS----S---S---------------S---S-SSSS-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------S-S--S-----S-SSSSS---------
-SSSSSSS-SSS--SS-SS-SSSSSSSSSSSSSSSSSS---------SS--S---SS--S--------SS----------
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-------------------S-----------------S--SSSSS-SSS-------------------------------
-----S------------------------S---S-------------------S-------------------------
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-------------------------------------------------SSSSSSSS-----------------------
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---------------SS---------------S------------------------------------S----------
--------------S----------S-------------------------------------------SS---------
--------SS-S-SS-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S--------------------SSS-----------------------------------
-----SSSSSSSSSSSSSSSSSS---------------------------------------------------------
------SSSS----------------------------------------------------------------------
---------------------------------S--------------------------SSSSSS--------------
-------------------------SS--SSS-S-----------------------S-SSSSSSS-------------S
--------------S-----------------------------------------------------------------
-------------------------------------------------------------------------------S
SS--------------------------SSSSS-----------------S-----------------------------
---------------------S----------------------------------------------------SSS---
--------------SS-S---SSS-S---S-------------------S-S-------------S-SS-SSS-------
-----SS-----S--------S--S----------------------------------------------------S--
----SS-S-S-S-S-S--SSSSSSSS-SS----SSSSS--SSSSSS-S--SSSSS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S------------------S---------SS-SS-S-SSSSS----------------S--------------------
---------------------------S----------SS-SS--S-SS-------------------------------
---------------S-----S----------------------------------------------------------
------------------------------------------S--S----------------------------------
--------------S-------S---------------------------S------------------S-SS----S-S
SSSSS
>forward_994
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--------------AAAGATCGGGTTGCAGCTCA----------------------------------------------
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>reverse_2591
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------------------------------TCAGTCGGTGATGCAGCAAT------------------------------
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