>input_sequence_73144
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---------------------------------------------------------------ACCGGAACGTGCGTGC-
---CTAAATACAGCGAGTGGCATTGCGCGCATAAGAGCGGCGCGACAGTACTGGTATAGTTCTACCATGGATAGCTCC--
-ATAGAATTCGTCGGCGACGGC------GACGACGTCGGGGCCGTCCTGGCGCGGTACAGCCTGGACGTGAGCGCCGGCT
GCGGCGGCCGGCGCAGCACGCTGCTGGACGAGTACGAGCGGCTCGCGTTCGAGGCGCAGCTCAAGAGCGCCATCCTGCGA
CGGTGCTACTCCGAGCCGAGCCCGGCCAGGTTCGTACACCCGGCCGACGGCGACACGCCGGCGCCGGCACTGCCCGGGAC
AGAGGGAAACGGCCGGCGGGAGGACCCGGCGGCAGAAAGAAGGTCGTGGCGACTCCACGAGGCGGTGGCCCGGTGGCTCG
GGTCGTTGAAGCCGGTGTTCTGCTGGCTCTGGAGCGTGCTGGAGCGGCGCCGGTGGAAGGAGCGGGACGCGCCACGAGGC
CCGCCCGCCACGCTGCCACGGGTGCAATTGCTTGACTACCTATGTTAAGTTAGTTA---CTC-CGCCGTTTTGCTTCTGA
ATGTTTATGGTCGCGTGCGATTTTTGTCGTCGTTGTCGCTGGATGAAATTTGTTTGATCTGTATAAATTATAAGCAACT-
----GT--------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G300100
GGTTGATGGAGGTGGAGATGATGTTGATGTCGTCACTCATCGTCGCCGGAAACCCTTT--GAGTATGGTTGAGTAAGGGC
ATCCATGGCAATTACCGACCTTGTAGATTGCGAGGTGCGCATATGGAGAAGTCCCAGCGGCCTGCCCACCATGGAAGTAT
GAGATGTTCGCGGCATACTTGCCAATCGTGTTCGAGGACGCGTGCTTGTC-GTGGCCGCTCTCATCCACAGGGCATGAGT
TTTCTTCAAAGAAAGACTTGACGCGGATAATTTTGTTGTTGCAGCGGAAATAGTGGCGAAAATGTCCAAATGCACAGGCT
CTGTCATGGTTTGGA------TAGGTCCGCGTTGTTGGATGCTCATGTGGTGGACGTGCACAAAGCACCTCCAGTTTGAT
TTCGGTTTGTGGGAATTGGAACAATCCTAAAAATTTG--TTGACAATCGCTGGATTGCAAAAAAAAAAAAAACAGAAAAA
AACTAGACTGTTCGATATAGACATTTGCGGACGGTTTGGTGATTGCCCTGAGAAGACTATGTTGGCAATCGAGCAGATTG
CTTGCGGCGGCCGTCTGCAACCGCAACTTTACATGATGCGTTTGCAAAAACAAAAGCAAACAGAAGGAATTTTCTCTGTT
GGGTAACTAAAGCGACAGAGCTGGAATCTCGTACTACAATGCAATTGTTGTGAAGCACAGTGCAAAGTTCCGTTCCCTTT
GTCAATAAGGCAACGTTTTGTTCGGTTGTGTTGTTCCTTGCGTATATCACAGGTCCCCGGAGCGAGTGGGTCAACAGGGA
AGGAGGCAGCGAGTGGG---TCAACAGTGATGTGCTCTTCATCGGAGGCCGTAGACATTGCCAC---------GCACCCT
TTGATTTACATTACACGAGCCGTACGGAGCAAGAGGCCCTTCCGGGTCCGGCGACGATCCTTGCCGTCGCTCCGACGCCA
GGCTCGGGCCAACTTTGGCTCAGAATAATGCGCTGCATGCGAGGACCACACCGGCCTACGAGCACCGGAACGTGCGTGC-
---CTAAATACAGCGAGTGGCATTGCGCGCATAAGAGCGGCGCGACAGTACTGGTATAGTTCTACCATGGATAGCTCC--
-ATAGAATTCGTCGGCGACGGC------GACGACGTCGGGGCCGTCCTGGCGCGGTACAGCCTGGACGTGAGCGCCGGCT
GCGGCGGCCGGCGCAGCACGCTGCTGGACGAGTACGAGCGGCTCGCGTTCGAGGCGCAGCTCAAGAGCGCCATCCTGCGA
CGGTGCTACTCCGAGCCGAGCCCGGCCAGGTTCGTACACCCGGCCGACGGCGACACGCCGGCGCCGGCACTGCCCGGGAC
AGAGGGAAACGGCCGGCGGGAGGACCCGGCGGCAGAAAGAAGGTCGTGGCGACTCCACGAGGCGGTGGCCCGGTGGCTCG
GGTCGTTGAAGCCGGTGTTCTGCTGGCTCTGGAGCGTGCTGGAGCGGCGCCGGTGGAAGGAGCGGGACGCGCCACGAGGC
CCGCCCGCCACGCTGCCACGGGTGCAATTGCTTGACTACCTATGTTAAGTTAGTTA---CTC-CGCCGTTTTGCTTCTGA
ATGTTTATGGTCGCGTGCGATTTTTGTCGTCGTTGTCGCTGGATGAAATTTGTTTGATCTGTATAAATTATAAGCAACT-
----GTAAAGAGCTCCATCATTTGCTTGTCCTAACGCG---GTAACTCCTAGATGGTGCCACATATGCTCGCGTGAGGAT
CTTATCTTACCCGATCGAGCTAGACCGTCCAATCAACAGCATGTATACGTGATGATTCATGGTTGGGTGGTCAGATAGAG
TAATCGAGCCACCAATCACGTATGTACATGTGCATATGTT-GCCACGGAAGTGGCCACCTTTTCTTCCTTTGGCCACGGA
AGTGGTAACTCCTGACTCCTGAGATAGTTTTAGTCGGCAAAGGCAGAGCAGAGCGGGACGGGTGAAACTGACGGGGAACT
TATTCAGCTAACCCGCGC----AGCGTCCAGGTGGTTGAACTGAACGTCAGTCGTCCTCGACCCATCGGCGTCAGGGGCC
ACCCCC--ACTAGCCCGG-GCGAGGATGCCTGCATCGCGTGCGCAACGGGTGACCACGA---CGGACGGAGCTGGCGTCC
GTGCCGCTGGACGTGGCGATCGCGTGGGCGCGGTTGGCGCGACGGAGTTATCCCGGCGGTTGCGCGGCCGGATCGATCGC
CGTCGCGTGCGGGCTAAGGCACGCCGTTGGGACGCACGCACGCACGTTGCGATTGCGCAGGTGGTTGGTTCGCGCGCGGA
TCAGCAGGTCGGCACACGGTCACGCGTCGACGTGTCGCGTCCTGGCGCCGGGCAAACGGCCGACGTTGACGCCGACGTCT
GCGTCCCCGGCGCGCCGAAAAGGGGACGGGCGCCCATGCCGACGGCGGCGGCGGAAAGGGGGACACGGGGGCAAATTGAT
CCAGCAAAACTTTTTACTCACGGTCTGTCAGGTTGCCAGTACAGTGTTCTGCGCCGTCGAATATTTACATGTGCAGTTGA
GCACTTCGATCATACTT---TCCATTAGCAAGCAGCGCCTGGCA------TGCATGAAGCATGCCAATCGATGCCGGAAA
ATGGTGCCGCAAGGGCTTGGGCATGCAGAGCTGTGCTACCTTGTTGTGCTGTGTCCGGCAGGCAATGGC
>chr1A_1
GGTTGATGGAGGCGGAAATGACATTGACGCTACCACTCACCATCGCCAGAAACCCTT----AGTATGGCTGAGTAAGGGC
ACCCATAGCAATTACAGACCTTGTAGAT-GCCAGGTGCGCGTATAGAGAAGTCCCAGCGGCCTGCCCGCCATGGAAGTAT
GAGATGTTCGCGGCATAGTTGCCAACCGTGTTCGAGGCCGCGTGCGTCTC-GTGGCAGCTCTCATCCACTGGGCATGAGT
TTTCTTCAAAAAAGGACTCGATGCGAATACTTTTGTTGTTGCAGCGGAAACAGTGGCGAAAATGTCCAAATGCACAGGCT
CCGTCACGGTTTGGA------TGGGTCCGCGTTGTTGGATGCTTATGTGGTGGACGTGCACAAAACGCCTCCAGTTTGAT
TTCGGTTTGTGGGATTTGGAACAATCCTAACAATTTTGTTTGACCATCGTTGGATCGCAACAAAAAAGACTGTTGACTGT
TTG----------------------------------------------------------------ATCGAGCAGATTG
CTTGCAGCGGCCGCCTGCAGCTGCAACTTTACATGATGCGTTTGCAAAAACAAAAGCA----GAAGGAATTTTCTCTGCT
GGGTAGTTAAAGCGACAGAGTCAGAATCTCGTACTACAACGCAATTGTGGTGAAGCACAGTGCAAAGTTCCGTTCCCTTT
GTCAATAAGGCAACGTGTTGTTCGGCTGTGTTGTTCCTTGCGTACAGTATAGGTCCCCGAAGCACA-----CAACAGTGA
AGGAGGCAGCGAGTGG---ATCAACAGTGATGTGCTCTTCATCGGAGGCCGTAGACATTGCG---ATTCCGATGCGCCCT
TTGATTTGCATTACACGAGCCGTACGGAGCAATAAGCATT------TCCGGCGACGATCCTTGCCGTCGCCCCGACGCCA
GGCTCGGGCCAACTTTCGCCCAGAATAATGCGCTGCATGCGAGGACCACACCGGCCTACGAGCACCGGAGCGTGCGTGCC
TCCCTAAATACAGCGAGTGGCATTGCGCGCGTACGAGCGGCGCAACAATACTGGTATAGTACCACCATGGATGGCTCGTC
GATAGAGCTCGTCGGCGACGGCGGCGGCGACGACGTCGGGGCCGTCCTGGCGCGGTACAGCCTGGACGTGAGCGCCGGCT
GCGGCGGCCGGCGCAGCACGCTGCTGGACGAGTACGAGCGGCTCGCGTTCGAGGCGCAGCTCAAGAGCGCCATCCTGCGC
CGGTGCTACTCCGAGCCGAGCCCCGCCAGGTTCGTAGACCCGGCCAACGGCGCCACGCCGGCGCCGGCACTGCCGCGGGC
GGAGGGAGACGGCCGGCGGGAGGACCCGGCGGGCGCCAGGAGGTCGTGGCGACTCCACGAGGCGGTGGCCCGGTGGCTCG
AGTCGTTGAAGCCGGTGTTCTGCTGGCTCTGGAGCGTGCTGGAGCGGCGCCGGTGGAAGGGGCACGACGCGCCACGAGGC
CCGCCCGCCACGCTGCCACGGGTGCAATTGCTGGACTACCTATGTTGAGTTGGTTGTTGCTC-CTCCGTTCTGCTTCTGA
ACGTCTGCGTTCGCGTGTGATTTTTGTCGTTGTTGT---TGGAGGGAATTTGTTTGATCTGTATAAATTAGAAGCATGTA
AACCGTAAAGAGCTCCATCATTTGCCTGTCCTAACGCG---GTAACTCCTAGACGGTGCCACATACGCTCGCGCGAGGAT
CTTATCTTACCCGATCGAGCTAGACCGTCCAATCAACACGACGTATACGTGATGATTCATGGTTGGGTGGTTCGATAGAG
TAATCGAGCCACCAATCACGCATGCACATGTGCATATGTTTGCCACGGAGGTGGCCTCTTTTTCCTCCTTCCGCCACGGA
AGTGGTA-------ACTCCCGAGATAGTTTTAGTCGGCAAAGGCAGAGCAGAGCGGGACGGGTGAAACTGACGGGGAACT
TATTCAGCTAACCCGCGCGCGTAGCATCCAGGCGGTTGAACTGAACGTCAGTCGTCCTCGACCCGTCGGCGTCAGGGGCC
ACCCCC--ACTAGTGCA-CGCGAGGATGCCTGAATCGCGTGCGCACCGGGTGACGACGACGACGGACGCAGCTGGCGTCC
GTGCCGCTGGACGTGGCGATCGCGGGGGCGGGGTTGGCGCGACGGAGTTATCCCGGCGGTTGCGTGCGCCGATCGATCGC
CGTCGCGTGCGGGCTAAGGCACGCCGTTGGG----ACGCACGCACGTTGCGATTGCGCGGGTGGTTGGTTCGCGCGCGGA
TCCGCAGGTCGGCACACGGTCACGCGTCGACGTGTCGCGTCCTGGCGCCGGGCAACCGGCCGACGCTGACGCCGACGTCT
GCGACCCCGGCGCGCCGAAAAGGGGACGGGCGCCCATGCCGGCGGCGGCGGCGGAAAGGGGGACACGGGGGCAAATTGAT
CCAGCAAAACTTTTCACTCGTGGTGTGTCGGATTGCCAGTACAGTGTTCTGCGCCGTCTAATATTTACATGTGCGGTTGG
GCAGTTCGATCATACGTTGATCCACTAGCAAGCAGCGCCTGGCA------GGCA---GGCATGGCAATCGATGCCGGAAA
ATGGTGCCACAAGGACCTGGGCATGCAGAGCTGTGCTGCTTTCTCGTGTTGCG-CCGGCAGGCAATGGC
>chr1B_3
--TTGATGGAGGCGGAGATAAAGTCGACGTTGCCACTCACCGTCGCCAGAAACCCTTTTTGAGTATGGCTGGGTAAGGGC
ACTCATAGAAAATACATACATTGTATACTGCGAGGCGCGTGTATGGAGAAGTCACAGCGGCCTGCCTGCCATGGAAGTAT
GAGATATTCGCGGCAAAGTTGCCAACCGTGTTTGAGGCCGTGTGCGTGTCTGTGACCGCTGTCATCCACGGGGCGGGAGT
TTTCTTCCAAGAGAGACTTGACGCG---AATTTTGTTGTTGCAACGGAAACAGTGGCAAAAAATTCCAAACGCATTGGCT
CTGCCATGGTTTGGACGGGTCTGGGTCCACGTTGTTGGATGCTTATGTGGCAGATGTGCACAAAATGCCTCCAGTTTGTT
TTCGGTTTGTGGGAATTGGAACAATCCTAACAGTTTTGT-TGACCATCGTTGGATTGCAAAAAAGG----------AAAA
ACCTAGACTGTTCGATCTAGACATTTGCGGACGGT--------------------------TTGGCAATCGAGCAGATTG
CTTGCAGTGGCCGTCTGCGACTGCAACTTTACATGATGCGTTTGCAAAAACAAAAGCAAACAGAAGGAATTTTCTCCGTT
GGGTAATTAAAGCGACAGAGCTAGAATCTCGTACCAC---GCACTTATGGTGAAGCACAGTGCAAAGTTCCGTTCCCTTT
GTCAATAAGGCAACGTGTTGTTCGGTTGTGTTGTTCCTTGCGTATAGTATAGGTCCCCGAAGCACA--------CAGTGA
AGGAGGCAGTGAGTGGATCATCAACAGTGATGTGCTCTTCATCGGAGGCCGTAGATGGCGACAACATTGCGATGCACCCT
TTGATTTG-----CACGAGCCGTACGGAGCAAGAAGCCCTTCCGGGTCCGGCGACGATCCTTGCCGTCGCTCCGACGCCA
GGCTCGAGCCAACTTTCGCTCAGAATAATGCGCTGCATGCGAGGACCACACCGGTCTACGAGCACCGGAACGTGCGTGC-
---CTAAATACAGCGAGTGGCATTGCGCGCGTACGAGCGGCGCGACAGTACTGGTATAGTTCTACCATGGATAGCTCC--
-ATAGAATTCGTCGGCGACGGC------GACGACGTCGGGGCCGTCCTGGCGCGGTACAGCCTGGACGTGAGCGCCGGCT
GCGGCGGCCGGCGCAGCACGCTGCTGGACGAGTACGAGCGGCTCGCGTTCGAGGCGCAGCTCAAGAGCGCCATCCTGCGC
CGGTGCTACTCCGAGCCGAGCCCCGCCAGGTTCGTAGACCCGACCGACGGCGCCACGCCGGCGCCGGCTCTGGTAGGGAC
GGATGGAGAGGCCCGGAGGGAGGACCCGGCGGGCGCCAGGAGGTCGTGGCGACTCCACGGGGCGGTGGCCCGGTGGCTCG
AGTCGTTGAAGCCGGTGTTCTGCTGGCTCTGGAGCGTGTTGGAGCGGCGCCGGTGGAAGGAGCGGAACGCGCCACGAGGC
CCGCCCGCCACGCTGCCACGTGTGCAATTGCTTGACTACCTATGTTAAGTTAGTTGCTATATACTCCGTTCTGCTTCTGA
ATGTCTGTGTTCGCGTGCGATTTTTGTCGTTGCTGT---CGTAGGGAGATTGTTTGATTTGTAAATTCTGCTGGT-----
AATCGAAAAGAGCTCCCTCATTTGCTTGTCTTAACTCGCTAGTAACTCCTAGATGGTGCCACATATGCTCGCGTGAGGAT
CTTCTCTTACCTGATCGAGCTAGACCGTCCACTCAACAACATACATACGTGATGGTTCATGGTTGGGTGGTTAGATAGAG
TAATCGAGCCACCAGTCACGTATGTACATGTGCATATGTT-GCCACGTAAGTGGCCTCTTTGTCCTCCTTTCGCCACGGA
AGTGGCA-------ACTCCTGAGATAGTTTTAGTCGGCAAAGGCAGAGCAGAACGGGACGGGTGAAACTGACGCGGAACT
TATTCAGCTAACC----CGCGTAGCATCCAAGTGGTTGAACTGAACGCCAGTCGTCCTCGATCCGTCGGCGTCAGGGGCC
ACACCCCCACTAGCCCGGCGCGAGGATGCCTGAATCGCGTGCGCGCCGGGTGACGACGA---CGGACGGAGCTGGCATCC
GTGCCGCTGGACGTGGCAATCGCGGGGGTGCGGTTGGCGCGACGGAGTTATCCCGGCGGTTGCGCGCGCCGATCGATCGC
CGTCGCGTGCGGGCTAAGGCACGCCGTTGGGACGCACGCACGCACGTTGCGATTGCGCATGTGGTTGGTTCGCGCGCGGA
TCAGCAGTTTGGCCCACGGGCACGCGTCGACGTGTCGCGTCCAGGCGCCGGGCAAACGGC------------CGACGTCT
GCGTCCCCGGCGCGCCGAAAAGGGGACGGGCGCCCATGCCGACGACGGCGGCGGAAAGGGGGACACGGGAGGAAATTGAT
CCAGCAAAACTTTTTACTCATGGTCTGTCAGATTGCCAGTACAGTTTTCTGCGCCGTCGAATATTTACATGTGCAGCTGA
GCACTTCGATCAAACGTTGATCCACTAGCAAGCAGCGCCTGGCAGGCAAAGGCA---AGCATGGCAATCGATGCCGGAAA
ATGGTGCCACAAGAGCTTGGGCATGCAGAAGTATGCAGCCTTGCAGTGCTGTG-CCGGCTGGCAATG--
>SNPs
------------S--------S-----S--S-S------S-------S--------------------S-----------
-S----S--------S------------------------S--------------------------S------------
-----------------S-------S-----------S-------S-----------------------S----------
-------------------------S------------------------S-----------------------------
----------------------S--------------------S--------------------S-S-------------
------------------------------S-----S-------S----S-----------------S-SSSSS------
-S--------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-----S---------------S----------------------------------------------------------
------S---------------S----------------S--------S-------------------------------
----------------S-----------------------------SS-S---------S---SSSSSSSS------S--
----------------S----------------------------------------------S----------------
-------S--------------------------S---------------------------------------------
----------------S---------------------------------------------------------------
------------------------------S--S----------------------------------------------
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-------------------------------------------------------------------------------S
-----------------------S------------S---------------S---------------------S-----
S------S------------------------SS-SS--S----------------------------------------
S-------------------------------------------------------------------------------
-------------------------------------------------------S--------S-----S---------
----S-S--S--------------------S-----SSS----S-S------------------------S-----SS--
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--------------------------------------S--------------------------------S--------
--------------------------------------------------------S-S-----S------S--------
-------SSSSSSS------------------------------------------------------------------
-------------------------S--------------------------------------S---------------
--------------------------------S------------S--------S-------------------------
------------------------S-----------------------------------------SS-S----------
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-----------------------------------------------------------------S--------------
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--------------------S----------S------------------------------------------------
---------------S--------S-------------------------S---SSS------S----------------
--------S----------------------------S------S--------S---------------
>forward_519
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-------------------GACATTTGCGGACGGTTTGG-----------------------------------------
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>reverse_1393
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--------------------------------CAGAAAGAAGGTCGTGGCGA----------------------------
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>forward_780
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----------------------------------------CGTATATCACAGGTCCCCGG--------------------
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>reverse_2576
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---------------TTTCCATTAGCAAGCAGCGC---------------------------------------------
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