>input_sequence_73143
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---------------------------------------------------------------------------ATGTG
GATGCCTAGTATAAGAGCGGCCGCAGCGAGGATCACCCGGCCCGCGTGGTCAGCTGTTGGGGTAACGGTGCCGAGGAGGA
TGGAGGGCATCGGCCGTAACTGCGCACCACGCTACTTCACCGACAGGATCCGCTCCGGCAGGGTGCTCAGCGAGGAGGAG
CGCGCCGCCGAGAACGTCTACATACAGGTAACTGCTTAGCC--------------TTTTTTTTTTGTAGGCGCTGTTGTG
AATCTAAGAGTT-GATAAAGATTTGTGTTACGTCCATGGTCCGTCTGAAGCAAGTGGGAAAATAAAATAAAGTTTGGACT
AAACCAAACTGAACTGTATTTACGTACTATATTTAT----TCTGCAGAAGATGGAGAGGGAGAAGCTGGAAAAGTTGAGG
AGGAAGAAGGCGGATCAGGAAAAGGCCGACGCAGCAAAGAGCGCCAAAGGAAACAACGAGGTAACAAACCAAACGAACCA
TCTTTACGGGCCTCGAGTGTAATTAACTTGTGGTCTCTCTTTTGTTTTTATTTTTATTTTCCAAAAGG-----AAAAACA
ATATGAAAGCTGTTTTCTCCTTTGGCTGCCACTGATGATCTGCTTTCATT----CTACTTACGCTGGGCTACTGCAGAAG
GGTGAGGGAGCTCATCCAAGCTGA--------------------------------------------------------
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>chr1D_1_TraesCS1D01G005800
GTCTTTTGTACCCAGAAATATTTTCCAAATTCTGAACAAATTTTGAAAGCGTGAACATTATTTAAAATTCCCAAATAGTT
ATTGAATTTGTGATTTTTTTAAAAAGGGAACATTTTTTGAATTTGTGAACAAATCTTGAAAATGGTGACATTTTTCGAAT
CGATGAACATTCTTGAAACCCTCGAGGGCTTGGGCGGCC--CAACAGGCGCCCGATAGGAGCGATGCCGTCGCCCAGTTA
GGCGAAGGCCTGTGCATTTTGTATTTTGTATTTTTTAATTTTCTTCTTTTTTTTGCTAATTCATTTCTCC-------TTT
TGAACCTTATTATTCTTTTTGAAACATGTTCAAAAATTTGTAATATTGTTTGGAATACCAAAATAACATTTTTAAGTAAC
TGTTTTAAATTATGATTTAAAAGTCTTTTTAA----------------------AAAAGAGCATTTACTGTTTTTCAATT
TATCATTTTGTATTTATTAGTTATGTTAAAAGGTAAAAATAACAGTTATTAAGTACCTGTTTAAATTATGATTTTAAATA
TATTTTTTCCCAAACTCGG-CATGGATGCCTACCATGGGCATGCTCACCTCTTGGCAAATTTGAATTCGAAGGAACAGAT
ATCGTACGGCGCCCACTGTAGGTTCGGGTGCACCATGGTTCTGAAACTCTCCTCTCTTGTAACAATCGCACGAACTTTGT
TGACGAATAAAGCAGCGTTGTTCCCTTAAAAAAAAGCGCGAGATTGGTTCTCTCCAAAA---AAAGGAGGAAAAAGAAAG
TGCTGTTTCTCGAAACCGCTTTCTGCCTTTCTTTCACTTTTATTGCTAGGTAACTTCGAGAGCCTGTCTTCCATTCCTTC
TCATCTTCGATAGAAGGATCTGGCACCAGCTTCAAAGCACTCACAGACCCACCCTAGTACTATAAATAGTTCAGTGCGGG
CCGTGACTTCATCCGCAATTCAACACCATCGTCGTCATTGTACTAGTCTTGGGCGGAGAGCAAGAAGCTCAAGGTATGTG
GATGCCTAGTATAAGAGCGGCCGCAGCGAGGATCACCCGGCCCGCGTGGTCAGCTGTTGGGGTAACGGTGCCGAGGAGGA
TGGAGGGCATCGGCCGTAACTGCGCACCACGCTACTTCACCGACAGGATCCGCTCCGGCAGGGTGCTCAGCGAGGAGGAG
CGCGCCGCCGAGAACGTCTACATACAGGTAACTGCTTAGCC--------------TTTTTTTTTTGTAGGCGCTGTTGTG
AATCTAAGAGTT-GATAAAGATTTGTGTTACGTCCATGGTCCGTCTGAAGCAAGTGGGAAAATAAAATAAAGTTTGGACT
AAACCAAACTGAACTGTATTTACGTACTATATTTAT----TCTGCAGAAGATGGAGAGGGAGAAGCTGGAAAAGTTGAGG
AGGAAGAAGGCGGATCAGGAAAAGGCCGACGCAGCAAAGAGCGCCAAAGGAAACAACGAGGTAACAAACCAAACGAACCA
TCTTTACGGGCCTCGAGTGTAATTAACTTGTGGTCTCTCTTTTGTTTTTATTTTTATTTTCCAAAAGG-----AAAAACA
ATATGAAAGCTGTTTTCTCCTTTGGCTGCCACTGATGATCTGCTTTCATT----CTACTTACGCTGGGCTACTGCAGAAG
GGTGAGGGAGCTCATCCAAGCTGATTCCTCAGATC---GATCAGGTCCTCCGTTGGCGGCGCTGGTGTTACATGTGATAC
ATGTTCGCAAATGTAGTATTTTTCCTTCTGTTCTGGGGTTATTTATAGATAGATCATGTAGATGCTGTGTGCTGCTGTGA
AAATATGTGCTTCTCGGTGGAGCTTTGGTATGTTGTCCTTGGTGGAGGCAGGAGGC--TCTGTCCACCAGAATCATATCT
TGTCGCTGGAGTTTTCTGTTTACTTTGGATTAGCAACCTGTGCATGAGCCGCCACCTGTGCGAGCCATGCATGCATCTGC
AGGGGCGTGAGATGCACCCATCTGCATCAGGCTTTTTTCCTTTATGTCTTGCATCAGGCTTTTTTCTTATCTTTTTGTGA
CGAATAAAGCTATATAAGAGAAAGAATCTAAGACCTTATGCTAATTTCAAGACTTTTAATAAGATGGCTGCATGCATCGC
TTAGATGCAGAGGCCGGGGGCAAGCCTTCTTTTTCAAAAAAAAAAGAGAAAGAATAGACGAAAAGTTAACACGGCACCAA
AACTGCTGTCTCTTGAGTACTTCTTCTCCACTGGTTCGCGTGTGTGCAGTGTGCTCAACCTTTTTCCAAATAATAGACGG
AGATTCCCTACCGTATTACTCCCTCCGTCCTTAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTACAAATTTGTACTAA
GCTTAAGACAATTATTTTGAGAGGGGGAGTATTATTCGCGTCGTCGTACTATTCTGAAAGGCTGAAAGTGTGTGGTGTAT
GTGTCTTCATTAGGGAGAGAAATTGTAGGTGCAGCACAGTCCTTCTTTTTTATTTTCGCTTTCAATTTTTAATCTATTCA
TATCTTTTGAACTAAAATAAATTAAATTTCAAATGCATATTCATGTTTCTGGTGAAAACGAGTGCTTTCATATGAGATCC
ATTTTGCATACGTTTTGGTGAGTTACTAAAAATTTCAACAAGTTTCAATTTCTAAAACTTGGTACAAGC
>chr7D_101
AAAAAG--------------------------------------------------------------------------
-------------------------GGGAACAATTTTTGAATTTATGGATGAATTTTGAAAAAAGGGACATTTTTTGATT
CAATATACTTTTTTTAATCCA-CGAGCGCTTGGACCTAGCTCAACAGACGCCCGATGGGAGCGATGCTGTCGCTTAGTTG
GGTAAACGCCTAAGTTTCTTTTTCTAT---TTTTTTGTGTTTCTACTCTTATTTTTTCGTTAATTTATTTTTCTCCTTTT
TGAACTTTACTACTCTTATTGGAACATGTTCAAAAAGCAGAAATTTTATTTGGAATACGAAAATAATAGTTTGAAATAAC
CTTTTCAAATTATGGTTTTAAATTCTTTTTCATTCAAACGTTTATTAAATGCTTAAAAAAGCATTTTGTGTTTTCATTTT
TATTCCTTTGTACTTATTTGTTAAGTTAAATACTAAAAATAATAGTT-TTAAGTACCTGTTTAAATTATGATTTTAAATA
ATTATTTTCTTCATACCTGTCATAGATGCCTACCAAGGGCATGCGCACCT------------------------------
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>chr1A_607
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------------------------------------------------------------------------------AT
ATCGTACGACGCTCACTGTAGGTTCGGGTTTACCATGATTCTGAAACTCTACTCTCTTGTAACAATCGCATGAACCTCAT
TCAGGAATAAAGCAGCGTTGTTCCCTTAAAAAA--GCGCATGATGGGTTTGCTCAAAAATAAAAAAGAGAAAAAAGAAGG
TGCTGTTTCTCGAAACCGCTTTGTTCCTTTCTTTCACTTTTATTT---GGTACCTTCGAGAGCCTATCTTTCATTCCTTC
TCATCTTCAGTAGAAGGATCGGGCACCAGCTTCAAAGCACTCAGA---CCACCCTAGACCTATAAATAGTTCAGTGTGGG
ACGTGAGTTGATCGGCAATTCAACGCCGCCATCGTCGTTGTACTAGTCTTGGGCAGAGAACAAGAAGCTCAAGGTCTGCG
GATGCCTAGTATAAGAGCGGCCGCAGCGAGGTTCTCCCGGCCCGCGTGGTCAGCCGTTGGGGTAACAGTGATGAGGAGGA
TGCAGGGCATCGGTGGTGGCCGCGCGCCACGCTACTTCAGCGACAGCATCCGCTCCGGCAGGGTGCTCAGCGAGGAGGAA
CGCGCCGCTGAAAACGTCTACATACAGGTAACTGTGCACTGCGGGTCTAGCCTTATTTTGTTTTTGTAGGTGCTGTTGTG
AATCTAAGAGTTTGATGAAGATTTGTATCACGACCATGGTTCATCTGAAGCAATTGA------AAAAAAAGGTTTCGACT
AAATAAAACTGAACTGTATTTACATAATATATATTATTTATCTGCAGAAGATGGAGAGGGAGAAGCTGGAGAAGTTGAGG
AGCAAGAAGGCGGATCAGGAAAAGGCCGACGCAGCAAAGAGTGCCAAAGGAAACAACGAGGAAACAATCCAAACAAACGT
AAAAAAG------------------ACTTGTGGTTTCTCTTTTATTTTTATTTTTATTTTTATTTGACAAAAAAAAAACA
ATATGAAAGCTGTTT-CTCCTTTTGCTGCCACTGATGTTCTGCTCTCATTAATTCTACTTACCCTGGATTGCTGCAGAAG
GGTGAGGGAGCTCATCCAAGCTGATTACTCAGATCGATGATCAGGTCCTCCGTTT-CGGCGCTGCTGTTACATATGATAC
ATGTTCGCAAATGTAGTATTTTTCCTTCTTTTCTGGAGTTATTTATAGATAGATCAGGTAGATGCTGTGTGCTGCTGTGA
AAATATGTGCTTCTC---------------TGTTGTCCTTGGTGGAGAGGCAGGACATTCTGTCGACCAGAATCATATCT
TGTCTCTGGAGTTTTCTCGGTGGAGCTTGTAGTAGTCAGGCATGGGT------------------CATGCATGCATCTAC
AAGAGCGTGAGATGCACCCGTTTGCATCAGGCTTGTTTCCTTTATGTCTTGCATCAGGCTTTTTTTTTCC-----TGTAA
CGAATAAAGCTATATAAGAAGAATAGA-----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------S--S-SS---S-------SS-S---------S--S-
-S--SS--S--S--S--S--SS----S------S-SSSS--------S--------S----------S-----SS----S
--SS--S----SS-SS-S--S-SS-S-SSS------SSS-----S--S--S---SS-SS--S----S-SS----------
-----S---S--S----S---S--------------SSS-S---S--S----------S-------S-S---S--S----
SS---S--------S---S---S-------S---------------------------S-------SS------SSSS--
---SSS------S-----S----S------SSS---------S----S--------------------------------
SS-S-----SSS-SSS-S-----S-----------S--------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------S---S----------------SS------S------------S-------------------S----S-SS-
-S-S-----------------------------SS----SS---S----SS---S----------S---S--------S-
----------------------S-S-------------------SSSS----S------------S----S---------
--------SS----------S----------------------S-SSS---------SS-----------------S---
S-----S--S---S----------S--SS-S-----S-----------------S----S---------------S--S-
-------------------------------S--S-------------------S-----------S---SS--------
--S----------SS--SS-S----S-------------S------S--------------------------------S
--------S--S----------------------SSS-SSS------------------S----------S---------
----------------S---------S-S---S-------S-S----------S--SSSSSSS----S--S----S----
---SS------------------S--S-----S-SS----------------------------------S---------
--S--------------------------------------S-------------------S-----S------S---SS
SSSSS-SSSSSSSSSSSSSSSSSSS---------S--------S----------------SSSSSSSS------------
---------------S-------S-------------S------S-----------------S----SS-S---------
--------------------------S---------------------------SS--------S--------S------
-----------------------------S------S-------------------S-----------------------
---------------SSSSSSSSSSSSSSS-----------------SSSSSS-S---------S---------------
----S------------SSS-SSSSSSSS-SSSSSS-SS-SSSSS-SSSSSSSSSSSSSSSSSSS-------------S-
-S-S---------------S-S------------S------------------------------S--SSSSSSS---S-
-------------------SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_653
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-------------------------------------------------------------------------AACAGAT
ATCGTACGGCGCC-------------------------------------------------------------------
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>reverse_2156
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---------------------------------------------------------------------------ATCGC
TTAGATGCAGAGGCC-----------------------------------------------------------------
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