>input_sequence_73109
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-----------------------------------------------------------------------------ATG
GCCGACGCCGCCGCGCTCGTCGCCGTGCCGCCGCAGGCGCAGC---CACAGCAGAGGCACCCGCTGAGCCAGATCGCGGC
GAGCGGGACGCACCGGCTGCTGCTCAAGCAGTGGCTCAAGGAGGAGGACCTGCTGGCGCGGCGCGTCGCGCTGCGGGAGG
CCCGCCTCGACGGCGCGCGCAAGGAGATCGCCTTCCTCTACTGCGCCTTCTTCGCCTTCCACGCCGCCTCCGTCCTCCTC
CTCTTCCTCTCCGCCTCCGTCGCCCCCCTGACCACCTCCCCGTCCTCCGCCTGCCGCCGCTCCTGGATCCCCTGCCTCGT
CTCCCTGCTCGCCTCCCTGGCCATGCTCTGGGCGCTGCGGTACAAGGCCGACACGGAGGCCGTGCTGGAGCGGGTGCTGG
CGCGGGAGCAGGAGGACGCCGCGCTGCTCGGCCGCTGCGTCGCCGAGCTCAAGCGCAAGGGGCTCGAGTTCGACCTGCTC
AAGGAGGTGGACGCGCTGCGCAGGGCCAAGGCCCTCCGCGTCGAGGCCAAGGCCGGCA---------CCGACGGGCCCAG
GCGCTGGCCCGCCAGGGACCTCCCCGTCTTCGCCCTCTTCGGCGCCGCCTGCGGCGTACTCGTGCTCACCAGGTTCCTGC
TCTGCAACTAG---------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G415900
CCTCGCCTGACCGCGAACGGAGCCCGGAGAAACTTATTCCGACACGACACCACCGCAACGGCCTCGGCACCGTCTCCCTC
AACCCTAACCCTACCACACACCCACCTAGCGAACATACCCGAGGTTCCCCCTCCCTCCCGCCACCGGAGCGGCCGACGGA
GAGAGAGGGAACCGGCGGCGTCACCGGCGGCGCGCAAGGGAACCCTCGTCGCCTTCCTGATCGCCTGTGCGATCCTACTT
TTCCGCTGTGTAGGTTGGTAGGTGCGGCAACTGTTTGATCCGACGGGTGTGATAAGTTGACCACATCCAACCTCGTTGGG
ACTTCAACCGACCATGAGACACTGTGACTTGCTTCA--CGGTCTCGTGGGTCTGCCTTTGCCGGTGTAAGTTTTAGATGG
CATGGTTCAAAGGAAGCTACGCGGCACAACCACCGGTGGGCACGACCTCTCGGGGTCTTTTGCCCAAAATGTCGAAGGTG
TTTTTCCAATGCCACTCATTCCGAACTTTGAAGAAGCATGCATGCACGGTACCATACACGCACGCAACGTCTCATACCTA
CACAGAGTTATGTGATTAACTGCCTATGGTCTAAACCGAGCTTTGCAGTTTCAGTATCAAGCAGTAGTC-----------
-------------------GTTGGTAGGCTGAGCGACGTGACGGGTGTGTGTGTGTGT--ATATAGACTGGGGATGAG--
AGCCGGAGGGTTGGGCTTCCAACTTCCGAGTGGCGGGCCGGGAACAGACAGAGCCCGTGAACAAATCTTTAGCCCATGTG
GCCCGGGCAGCGTGCACACTGATTCCGACCGTTGGGTCGCCTCGGGTGCGCTCTCTCGCTCGCTTTCGGCAAAGCCACGC
GCACTCA-------------------------------------------------------------------------
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--------------------------------------------------------------------------TCTCCC
CGACCGTTGCCGAAAATTCCCCTTCAAAACCTCCCCACACGAGACTCGCCATCCCCACCCATCA----AATCCACCGCCA
CACACG----------CCACCCTCGCCGGAGAAGAAGGATCCATCCCATCCCATCCATCTGCATACCAATCCGGGCCATG
GCCGACGCCGCCGCGCTCGTCGCCGTGCCGCCGCAGGCGCAGC---CACAGCAGAGGCACCCGCTGAGCCAGATCGCGGC
GAGCGGGACGCACCGGCTGCTGCTCAAGCAGTGGCTCAAGGAGGAGGACCTGCTGGCGCGGCGCGTCGCGCTGCGGGAGG
CCCGCCTCGACGGCGCGCGCAAGGAGATCGCCTTCCTCTACTGCGCCTTCTTCGCCTTCCACGCCGCCTCCGTCCTCCTC
CTCTTCCTCTCCGCCTCCGTCGCCCCCCTGACCACCTCCCCGTCCTCCGCCTGCCGCCGCTCCTGGATCCCCTGCCTCGT
CTCCCTGCTCGCCTCCCTGGCCATGCTCTGGGCGCTGCGGTACAAGGCCGACACGGAGGCCGTGCTGGAGCGGGTGCTGG
CGCGGGAGCAGGAGGACGCCGCGCTGCTCGGCCGCTGCGTCGCCGAGCTCAAGCGCAAGGGGCTCGAGTTCGACCTGCTC
AAGGAGGTGGACGCGCTGCGCAGGGCCAAGGCCCTCCGCGTCGAGGCCAAGGCCGGCA---------CCGACGGGCCCAG
GCGCTGGCCCGCCAGGGACCTCCCCGTCTTCGCCCTCTTCGGCGCCGCCTGCGGCGTACTCGTGCTCACCAGGTTCCTGC
TCTGCAACTAGGCCGAATCTCGCGAATCATGGTCCGTTCCGTGTTCATCAGGACTCCGATCGCTGGATCGATTGATGAAG
CGTACTACTGTTTCTGTTCGTTCCTGCAGAACTGTTTGTTCTGCGAATTTTGATGTCTGTAATAAGGATAAGATCTGTTG
CCGATGCGTTTAGTTTCGTCCGTGTTGGTGTTTGCTGTTATACCAGAGGGGCAAAATTACACTCCCAAACCTCAAGTGTT
TATGAA-----CATTAAGATATAAGTTAATCCCCTAAATTTGATCCTCTTTA----------------------------
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-----------CATTGTCCTTGTGTGAAGGATTGTGATTGTTCTGTCATGCTTCTCTTAATATCAGTTAGTTTCCGAGTT
C--------CTGAAAATCGACGAGACATTGGCACCACAATTTGCCATGATATCGA-------------------------
----------GTTATGGGAAATGTTCAGAATAAATTACCAAGTCTCGGAGCGTCGGGATACATTCTGGAACATCAAGGAA
GGGGTACGGTAAAGTTTAACACAGGAGCTAAGATGAAT----GAGTCTTCAGGGAACCAGGTGTATT----TAGTAGAAG
AGACAGTGCCAGCTCAACTCTCTAGTTCCTGAATCTATTCTCCTCCTTTTGCTTGCCCTTTACACCTGAAAACTCTTGAC
AAGCCCGATTCCATGCAGCTTCAGATGCAAGCCTGGCAAAAGGAAATTGCAAACCAAGACAG---------AGTGGTTAG
CTGATTGCAATCGGAAACCATTCCAC--CATAGATTTGCACTTGCTGTAATTAAAAAGATGAACTGTGCCCATGATGATG
TGTTGATTTTTGTTTGTGCTTGTACCAGAACCAGAGGGCAAAATCAAAATATGTGCAATCACCATCCCCTCTCCATACAA
TTACCATAAAGATATGTTTGCCTCCATTTGATCCTCATACATTGATATAGTTCTGCACGTTACTATCTTCTTCCTTATGA
GTATTACTGCTAGCAGCAAAAACATCTGAAGAATTCAGCCCCGTTTCTGGAAACCAAAAAGATACTGTCAGCTTTCC
>chr5B_283
ACA-----------------------------------------------------------------------------
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---------------------------------------------GGTGTGATAAGTTGACCACATCCAACCTCGTTGGG
ACTTCAACTGACCATCAGACACCCCGACTTGCTTTTCGCGGTCTCGCGGGTATGCCCTTGCCGGTGTAAGTTTTAGATAC
CATGGTTCAAAGGAAGCTACGCGGCACGACCACCGTTGGGCACGATCTCTCAGAGTCTTTTGCCCAAGGAGTGAAAGGTG
TTTTTCCGATGCCACTCATTCCGAACTTTGAACAAGCATGCGTGCACGGTACCATACACGCACGCAACGTCTCATGCCTA
CACGGAGTTATGTGATTAACTGCCTATGGTCTAAACAGAGCTTGGCAGTTTCAGTATCAAGCAAGAAGTAGTTTGTTTTT
GAGAAGAAAGAAGTAGTTTGTTGGTAGGCTGAGCGACGTGACGGGTGTGTGTGTGTGTGTATATAGAGTGGGGATGAAAA
AGCCGGAGGGTTGGGCTTGCAACTTCCGAGTGGCGGGCCGGGAACAAACAGAGCCCGTGAACAAATCTTTAGCCCATGTG
GCCCGGGCAGCGTGCACACTGATTCCGACCGTTGGGGTC-----------------------------------------
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----------GCCTCGGGTGC--------GCGCTCTCTCTCTCTCTCGCTTTCGGCAAAGCCACGCGCACTCA-TCTCCC
CGACCGTTGCCAAAAATTCCCCTTCAAAACCTCCC-ACGCGAACCTCGCCATCCCCACCCAGGCCGCGAATCCACCGCCA
CAC-----GCCCCACCCCACCCTCGCCGGAGAAGAAGGACCCATCCCGTCCAATCCGCACGCCAGCGCAGC----CCATG
GCCGACGCCGCCGCGCTGGTCGCCGTGCCGCCGCC------GCAGGCGCAGCAGCGGCACCCGCTGAGCCAGATCGCGGC
GAGCGGGACGCACCGGCTGCTGCTCAAGCAGTGGCTCAAGGAGGAGGACCTGCTGGCGCGCCGCGTCGCGCTGCGGGAGG
CCCGCCTCGACGGCGCGCGCAAGGAGATCGCCTTCCTCTACTGCGCCTTCTTCGCCTTCCACGCCGCATCCGTCCTCGTC
CTCTTCCTCTCCGCCGCCATCCCGTCCCCCGGCCCGT---CGTCCTCCTCCTGCCGCCGCTCCTGGATCCCCTGCCTCGT
CTCGCTGCTCGCCTCCCTGGCCATGCTGTGGGCGCTGCGGTACAAGGCGGACACGGAGGCCGTGCTGGAGCGGGTGCTGG
CGCGGGAGCAGGAGGACGCCGCGCTGCTCGGCCGCTGCGTCGCCGAGCTCAAGCGCAAGGGGCTCGAGTTCGACCTGCTC
AAGGAGGTGGACGCGCTGCGCAGGGCCAAGGCCCTCCGCGTCGAGGCCAAGGCCGGCGCGGGCGGCGCCGACGGACCCAG
GCGCTGGCCCGCCAGGGACCTCCCCGTCTTCGCCCTCTTCGCCGCCGCCTGCGGTGTCCTCATGCTCACCAGGTTCCTGC
TCTGCAACTAGGCCGGGTCTCACGAATCATGGTCCGTTCCGTGTTCGTCAGGACTTCGATCGCTGGATCGATTCATGAAG
CCTACTG----TTCTGTTCGTTCCTGCAGAACTGTTTGTTCTGCGAATTTTGATGTCTGTAATAAGGAAAAGGTTGTCAT
GCGTTCGATTTTGTTCTGTGGTCCTACCAGCTGAGAA--------------CAAAATTACCCTCTCAAACCTCAGTGTTA
AT------GACCATGAAGATATATGTCAATCCCCTAAATTTGATCCTCTTACATCCTTGTGCAGGATTGTGATTGTTCAG
TGATGTTTGATCCTCTTACATCATTGGGCTGTTGTGCTGGATTGTGATTGTGCATGATATATGTTACTACCTCAAATTGA
TCATCTTATTGCATTGTTCTC--GTGGAGGATTGCGATTGTTCTGTGATGTTTGTCTTCCACATATCAGAAATTAAGTTA
GCGAGAT----------------AACATTGGCACCCCAATTTGCCATGATATCAAATCAAGCCATCTGTTACTGGGATAC
AATTTGGAACGTTGTGGGAAACGTTCAGAGTAAATTACCAAGTGTCAGAGTT---GGATGCATTTTGGAACATCATGGAA
GGTACGGTGAAGG----------------AAGTTAAAG----CAGTCTTAAGGAAACCAGGTGTATT----T--TAGAAG
GGATAGTGCCAGCTCAA--CTCTAGTTCCTGAATCTATTCTCCTCCTTTTGATTGCCCTTTACACCTGAAAACTCTTGAC
AAACCCGATTCCATGCAGCTTCAGATGCAAGCCTGATAAAAGGAAATTGCAAACCAAGACAAGTCTTCAGAAGTGGTTAG
CTGATTGCAATCGGAAACCAAACAACATCATGGATTTACACTTATTATAATTAAAAAGATGAACTGTG------------
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>chr5D_815
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--------------------------------------------------CTCTCTCGCTCGCTTTCGGCAAAGCCACGC
GCACTCCACTCCCCGACCGTTACCATAATAATTTGGAGATAACCTTGAATTACATTTGAGTAAATAATTACACAATATCG
TAAACCAACAACCTTAATTTTGATGAATATCATACGATACTTGTAGTATATAAGATACTGGGGTGAAAAATAGAGCAAAA
TGGGCAGAGTTGCTAGTTTCTGTAACATTTAGTGAAAGAGGGAGAGAACAAAAAATTCCAAATATGGAAGCAGAAAATAC
ATAAAACAAATATAGAGCAGTTAGGGTTACGGTATGGTTGAATGGGTGGATGGGATTAGACCACATGTCTATGGACAATG
AATCTATGAGGTCGAGCTACATGCACATAGAAAATTACGTTTGTGCATACTATATAGTAGAAGCCGTTGTTCCGTTTCAT
TCAGTTCACACAAGTCTCTCTTTAAATTTCTGTTTCCACAAAGTGTGCTATTTTCGTAATCCGATGCAATAAACGACTTG
TATATGCCATACTCCAAACTGAATTAGGACATGAATGCATGCGTGTGGGAAGTCAATCACGGCCGATCTCCGTGGGACTT
CAACCAACCACCGGATGCTGTGATGAACTCCATGGGTTTGACAGCCTGTCCTTGCGGATGTAGGTTTGAGATGCCACCGT
ATAGACGAAGCTACGCGGCACGACCGCCGGTGGGCACAATCTCTCAGGATAATATGGAACACAAGTCGAAAGTGTTTTCC
CGATGCCACTCATTTCCGAACCACGAAGAAGCACGTGTAGTCGTGTACATGCCGCCACACGCGCGCAATGTCTCATGCCT
ACGCGGAGTTACTTGCTTAACTAACTGTCTATGGTCTATATGGAGCTTGATGGTTTCAGTATCAAGCAGTAGAGCTGGAA
GAAAATTGTCGATCGGATCGAGCACGGCGTTTGTTTGTGGTGTTGGTAGGCTGAGAGGGAGAGCGAGTGTGTGTATATAT
GTAGACCGAGGAGGGGAAAGGCGGAGGGGTGGGCTTCGAACTACCGAGAGGCGGGCCTGAAACAAGCACGGCCCGCGAAG
GGATTGTTGGCCCATGTGGCCTGGGCAGCGTGCACACTCTCACCGCGCGGATCGGAATGATGGACCGAGGAGGATTCCGA
CCGTTGGGTTGCCTCGGGTGCCCACGCGCGCGCTCTCTCTCTCTCTCGCTTTCGGCAAAGCCACGCGCACCTCCTCTCCC
CGACCGTTGCCAAAAATTCCCCTTCAAAACCTCCCACGCCGA-ACACACCATCCCCACCCCGGACGCGAATCCACCGCCA
CACACCCTGCCCCACCCCACCCTCGCCGGAGAAGAAGGATCCATCCCATCCAATCCGGACACCAGCCCAGC----CCATG
GCCGACGCCGCCGCGCTCGTCGCCGTGCCGCCGAC------GC---CGCAGCAGCGGCACCCGCTGAGCCAGATCGCGGC
GAGCGGGACGCACCGGCTGCTGCTCAAGCAGTGGCTCAAGGAGGAGGACCTGCTGGCGCGCCGCGTCGCGCTGCGGGAGG
CCCGCCTCGACGGCGCGCGCAAGGAGATCGCCTTCCTCTACTGCGCCTTCTTCGCCTTCCACGCCGCCTCCGTCCTCGTC
CTCTTCCTCTCCGCCTCCATCCCCTCCCCCGGCCCGTAC---TCCTCCTCCTGCCGCCGCTCCTGGATCCCCTGCCTCGT
CTCGCTGCTCGCCTCCCTGGCCATGCTCTGGGCGCTGCGGTACAAGGCGGACACGGAGGCCGTGCTGGAGCGGGTGCTGG
CGCGGGAGCAGGAGGACGCCGCGCTGCTCGGGCGCTGCGTCGCCGAGCTCAAGCGCAAGGGGCTCGAGTTCGACCTGCTC
AAGGAGGTGGACGCGCTGCGCAGGGCCAAGGCCCTCCGCGTCGAGGCCAAGGCCGGCGC---------CGACGGGCCCAG
GCGCTGGCCCGCCAGGGACCTCCCCGTCTTCGCCCTCTTCGGCGCGGCATGCGGCGTCCTCGTGCTCACCAGGTTCCTGC
TCTGCAACTAAGCCGGATCTCACGAACCATA----------------------------------GATCGATTGATGTT-
----CTG----TTCTGTTCGTTCCTGCAGAACTGTTTGTTCTGCGAATTTTGATGTCTGTAATAAGGATAAGATCTG---
---ATGCGTTTAGTTTCGTCTGTGTTGGTGTTTGCTGCTATACCAGAGGGGCAAAATTACACTCCCAAACCTCAAGTGTA
TGATGACCGACCATGAAGATACATGTTAATCCCCAAAATTTTGTCCTCTTTA----------------------------
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-----------CATTGTCCTG--GCGCAGGATTGTGATTGTTCTGCGATGTTTCTCTTAAACATGTCAGAATTTCAGTTA
GCCGGGTTTCTGAAAACCGACGAAAAATTGGCACCGCAATTTGGCATGACACCA--------------------------
--TTTGGAATGTTGTGGGAAATGTTCAGAACAAATTACCAAGTGCTGGTGTT--GGGATACATTCTGGAACATCAAGGAA
GGGGTACAGGCGATGT--ACACAGGAGCTAGGATGAATCAGTCAGTCTTGAGGAAACCAAGTGTATGTATAT--TAGAAG
AGACGGTGCCAGCTCAACTCTCTAGTTCCTGAATCTATTCTCCTCCTTTTGCTTGCCCTTTACACCTGAAAACTCTTGAC
AAACCCGATTCCATGCAGCTTCAGATGCAAGCCTGATG-AAGGAAATTGCAAACCAAGAAACCTCTTGAGAAGTGGTTAG
CTGATTGCAATCGAAACCA-------------------------------------------------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
--------S------S------SSS---------SS----------S----S----S---------------------SS
---------------------------S-------S---------S-----S-S-------------SSS--SS------
-------S------------------------S--------S---------------------------------S----
---S--------------------------------S------S-------------------SS-SSS-----------
-------------------------------------------------------------------S---------S--
------------------S---------------------------S---------------------------------
------------------------------------SSSSSSSSSSSSSS------------------------------
------S-------------------------------------------------------------------------
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-----------S-----------------------S--S---S------------------SS-----------------
-----S---------------------------------------------S----SSSS--SSS--S-S-SSSS-----
----------------------------------SSSSSSS------S------S-------------------------
------------------------------------------------------------S-------------------
-----------------------------------------------------------------------------S--
------------------S--S--S---SSSS-S-S-S-S--------S-------------------------------
---S--------------------------------------------S-------------------------------
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---------------------------------------------------------S----------------------
---------------------------------------------------------S----------------------
---------------S-----S------------------------S--------S------------------------
-S----SSSSS------------------------------------------------------------------SSS
S-------------------S----------------S-----------------------------------------S
-SSSS---------S--------S--------------------------------------------------------
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--------------------SSS---S-------------------S---S---------SSSS-SSSSSS--S-SSS-S
S---------------S------S-----------S-----------------S--------------------------
-------------S-----------------------------S------SSSS--------------------------
-------S-S-S-SS-SS------------------------S------S---S------------------SS------
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--S--------------------------------SS------------------------S------------------
--------------------SS-S-------S-----S-----SS-S---------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_336
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----------------------------------------------------------------------------TGGG
ACTTCAACCGACCATG----------------------------------------------------------------
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>reverse_3039
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------------------------------------------------------------------------------TG
CCGATGCGTTTAGTTTCG--------------------------------------------------------------
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