>input_sequence_73107
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---------------------------------------------------ATGGAGATTGGCCGACGAGGGCTCTGCAA
CTCTGGCGATACTGCCTTGAAGCTGTTCGGAAGCACCGTCAGTGTTGAAATGGAGCAACGCGGGGCCGCCGGAAGCAGAG
ACGACGCTGCAGTGAAGCCTCGCCGGAGTTGCAATGAAGCTTCACCGGACGCGTCGGTGTTGCG-TTGGAGCTCCACAGG
TGCTGCGATGGAGCTTTGCCGGACGCGTCGGCGCTGCGTTGGAGCTCGATCGGTGCTGCTCTTGCTGTGATGCAACTCGT
CCACGACAGTCGGCATCGACGCCCGCTGCATCGCAGCTCCGGCGACGTCGCGACCACTGCATCTTACCTCCGGCAGCCGC
TGCATAGCAGCTCCAACGACGCCGGCGGCCGCTGCATCGCAGCTTCGGCGGCATCGACGCCTGCTGCATAGCCGCTCCAG
CGGCATCGACAACCGCTGCATAGCAGCTCTGGCGGTGTCGCAGCCGCTACAGTGCAACTCCGGTGGCGTTGATGAGCGCT
GCATCGCAGCTCTAGTAGCGTCGATGCCCGCTGCATCACAACTCCAATGGTCGTTGCATTACAGCTCCGGCGTCGTCGAC
GCCCGCTCCATCACAGCTCCGACAGT----------------------------------------CGAGCTGGTAGGTG
TGCTTGGAGCGTGA------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G140400
TGATAAAAAGTAAACTGAATGGATATCACATGATTTATTTAAAAGATTTACGATCCGCGTATAATAGCTGCT-GCATGTC
CGGTTGACGAGGTAACCAGCGACATGCTCCTCGTCAGATAGGGAATCGAAATTATGCGCCAGTCAGGTCTCAGAGGTGTC
TAGCCGGCGGACCCCGCTCGTATCCGTCAGTCCACTGGAAA---------------------------------------
--------------------------------------------------------------------------------
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-ACCCGAGCCATGGCCCTCACGTGTATAGCAACGAATGCTATTTTGATCCCACGTGGGTTGCATCTAATGCCACTTTAGA
ACCGGTCAAACCTTGCTTTTGTCTCCGTCCGTACACACTG-TTTTTTGAGCAGATCAGCGGCGCATAGTGCTACAGCAGC
AAAACTTCCCTCGGTGGATGGAGCTTCTCGTGGTGGCAACTAGGTAGAGGCGAGGTCGACCCCGAGCCCGACTCGAAGAA
ACGCCGGTGGAGACGGGGCGCACGGCCGAGCCGCGGCGCGGCGGTTCAAGGCGTGGCGGCGGCTCAGCGCGGCAGATCAG
G-CCGACGCAACACGAGGCCACGGTGGCAAGGTGACCCGAGGCGTCCTCCCCAGCGACGGAGTAGCACTTTTCTTCCTTT
CTTTGATTCCTTCGATCTTCATGTGAATTAAGAAAAAGTGTTCGTTTCAACCGGCTGATTTCACAGCTCGCTAAGCCGCA
CGCTATGCTCGCCACGTGTATGTGAGGCCCACCCACCGCCTGCGGACCAACCCATCCTTATCTCCGGTGGCGCACGTGAA
ACCACCCATTCCTTATCTCTTTTCTACAGAA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCCCTTCGTCTCCATCGTTCCTCTCTCTTGCTGCTCCTCGCC---GACATGCTT
CTCCTTTTCTCTGTCGCTACTGTTGTTG-------------------------CTGGAG---------------------
----GCGTTGGGCTGTAGACGGGCAGCCGCTCGCCGGTCGCTGCAAGAGGGGACACCCGTGGTGCAAGGGGGGCTCGATG
CGGCGAGCTGCCCGGAGATGCAATGGAGCGCGCGCCGCTGCGATGATATCCATGGAGATTGGCCGACGAGGGCTCTGCAA
CTCTGGCGATACTGCCTTGAAGCTGTTCGGAAGCACCGTCAGTGTTGAAATGGAGCAACGCGGGGCCGCCGGAAGCAGAG
ACGACGCTGCAGTGAAGCCTCGCCGGAGTTGCAATGAAGCTTCACCGGACGCGTCGGTGTTGCG-TTGGAGCTCCACAGG
TGCTGCGATGGAGCTTTGCCGGACGCGTCGGCGCTGCGTTGGAGCTCGATCGGTGCTGCTCTTGCTGTGATGCAACTCGT
CCACGACAGTCGGCATCGACGCCCGCTGCATCGCAGCTCCGGCGACGTCGCGACCACTGCATCTTACCTCCGGCAGCCGC
TGCATAGCAGCTCCAACGACGCCGGCGGCCGCTGCATCGCAGCTTCGGCGGCATCGACGCCTGCTGCATAGCCGCTCCAG
CGGCATCGACAACCGCTGCATAGCAGCTCTGGCGGTGTCGCAGCCGCTACAGTGCAACTCCGGTGGCGTTGATGAGCGCT
GCATCGCAGCTCTAGTAGCGTCGATGCCCGCTGCATCACAACTCCAATGGTCGTTGCATTACAGCTCCGGCGTCGTCGAC
GCCCGCTCCATCACAGCTCCGACAGT----------------------------------------CGAGCTGGTAGGTG
TGCTTGGAGCGTGATAGTGGGCGCTGCATGGGTGGTGCCTGTGTTAGCGCGAGAAGGAAGATGTTGACGGGAAGTGCGAT
CCGTGAACGGCTACGATGTGCATAATCAGACGATTACCAAGGCGGCTGATAACCCGCAGTTATCATCCGGCTTACGCCTA
GCATCGGCCGTTTAGAATTGGCTC-ATCCAATTTTAACCGGGTCAACAATTTCTCAAGGAGCCCTACCATTCAATTCAAT
TCTTTTAATTTCTTATGTTTCCTAATTTTG--------------AATTGAGCTATTTAATTTTGAATTTGGTTTATGA-T
TTTAACCGGGTCAACAATTTTTCAAATCAATC-AGCAGCAGCCGGTCTATAAAAACATATCAACTCCACGCACACTCCCT
CCACTTAGA-AAAAAGAAGCATCA-CCATGTGATAATGTAGCATCAATATAGTACATGCAGTCACCGACTTTAAAATT-T
CCCCACATAAATATACGTTAGTTAGTGGATAACACAGAACCACATCAT-AAA-AGCATGATCAAATCACTGTATTATAAA
TAAAAATAAAACACACTCCATCATCTCCCTCACCCATCAAACTAAATATTCCATCAGTTTCAGAAT-TAAGGGGTATCAG
-TTTTTTTGGAAAGTCAATTTTTTTTACTTTGACCAAGTTCAGAGC-AAAAAATATCAACATCCATATT---ATTAAAC-
AGAGA-A---A----GTATGAAAATTCATTTCATGATGAATCTAAT-CACACTAATTTGATATTATGGATTTTGGTATAT
TTCTC--TACAAATTTGATCCAACTTAAA-AGGTTTGACTTTTC-AAAAACATA-ATACAACTTATATTTTGAAAGGGAG
TGAG---TAA-----TTTTTTT---AAGAAAACCAACGACACCAACGACGCAGCAAAGCGCGTCCAACCCTTCTAGTCTC
AACTAAGCCAGGCAGAGGACCCTCGCCACCATCTCCACCTCCTGGTGCTCCTCCTCCTCATCAGAGTGGAGCACGGTGTG
GTCAAACAATGCATCTGTGTAGTAGTCC
>chr3D_1
TGATAAAAAGTAAACTGGATGGATATCACCTGATTTATTTAAAAGATTTAC-AACCGCGTATAATAGCTGCCGGTATGTC
CGGTTGAGGAGGTAACCAGCAACACGCTCCTCGTCAGATAGGGAATCGAAATTATGTGCTAGTCAGGTCTCAGAGGTGTC
CAGCCGGCGGACTCCGCTCGTATCCGTCAGTCCACTGGAAACTATGATTCACAGTAAACAGCACAACAACAGCTCGCGGC
ATGCACGCATTCACAATTTTAGTACTACGCAGGAGAAGGACGCAGTCGCAATGCATGGTGGCTTGTCGCAACGCGATTTG
GCGGCGGCAAATATCCTTCAATCTGGTTTTGTTTTGCTGATGATGAAAATAGCAGACGGGAGTGCGAATACCGATACCTA
CACCCGAGCCATGGCCCTCATGTGTGTAGCAACGAATGCTATTTTGATCCCACGTGGGTTGCATCTAATGCCACTTTAGA
ACCGGTCAAACCTTGCTTTTGTCTCCGTCCGCACACACTG-TTTTTTGAGCAGATCAGCGGCGCATAGTGCTACAGCAGC
AGAACTTCCCTCGATGGGTGGAGCTTCTCGTGGTGGCAACTAGGTAGAGGCGAGGTCGACCCCGAGCCCGACTCGAAGAA
ACGTCGGTGGAAGCGGGGCGCGCGGCCGAGCCGCAGCACGGCGGTTCAAGGCGTGGCGGCGGCTCAGCGCGGCGGATCAG
GTCCGACGCAACACAAGGCCGCGGTGGTAAGGCGACCCGAGGTGTCCTCCCCAGCGACGGAGTAGCCCTTTTCTTCCTTT
CTTTGATTCCTTCGATCTTCACGTGAATTAA-------------------------------------------------
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>chr3D_1
TGATAAAAAGTAAACTGGATGGATATCACCTAATTTATTTAAAAGATTTACGATCCGCGTATAATAGCTGCCGGTATGTC
CAGTTGAGGAGGTAACCAGCAACACGCTCCTCGACAGATAGGGAATCGAAATTATGCGCCAGTCAGGTCTCAGAGGTGTC
CAGCCGACGGACTCCGCTCGTATCCGTCAGTCCACTGGAAACTACGATTCACAGTAAACAGCACAACAACAGCTCGCGGC
ATGCACGCATTCACAATTTTAGTACTGCGCAGGAGATGGACGTAGTCGCAATGCATGGTGGCTTGTCGCAACACGATTTG
GCGGCGGCAAATATCCTTCAATCTGGTTTTGTTTTGCTGATGATGAAAATAGCAAACGGGAGTGCGAATACCGATACCTA
CACCCGAGCCATGGCCCTCATGTGTATAGCAACGAATGCTATTTTGATCCCACGTGGGTTGCATCTGATGCCACTTTAGA
ACCGGTCAAACCTTGCTTTTGTCTCCGTCCGCACACACTG-TTTTTTGAGCAGATCAGTGATGCATAGTGCTACAGCAGC
AGAACTTCCCTCGGTGGGTGGAGCTTCTCGTGGTGGAAACTAGGTAGAGGCGAGGTCGACCCCAAGCCCGACTCGAAGAA
ACGCCGGTGGAAGCGGGGCGCGCGGCCGAGCCGCGGCGCGGCGGTTCAAGGCGTGGCGGCGGCTCAGCGCGGCGGATCAG
GTCCGATGCAACACGAGGCCGCGGTGGTAAGGCGACCCGAGGTGTCCTCCCCAACGATGGAGTAGCCATTTTCTTCCTTT
CTTTGATTCCTTCGATCTTCACGTGAATTAA-------------------------------------------------
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>chr3A_1
TGATAAAAAGTAAACTGGATGGATATCACCTGATTTATTTAAAAGATTTAGGATCCGCATATAATAGCTGCCGGCGTGTC
CGGTTGACGAGGTAACCAGCAACATGCTCCTCGTCAGATAGGGAATCGAAATTATGCGCCAGTCAGGTCTCAGAGGTGTC
CAGCCGGCGGACCCCGCTCGTATCCGTCAGTCCACTGGAAA---------------------------------------
--------------------------------------------------------------------------------
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-ACCCGAGCCATGGCCCTCATGTGTATAGCAATGAATGCTATTTTGATCCCACGTGGGTTGCATCTAATGGCAGTTTAGA
ACCAGTCAAACCTTGCTTTTGTCTCCGTCTGCACACACTG-TTTTTTGAGTAGATCAGTGGCGCATAGTGCTACAGCAGC
AGAACTTCCCTCAGTGGATGGAGCTTCTCGTGGTGGCAACTAGGTAGAGGCAAGGTCGACCCCGAGCCCAACTCGAAGAA
ACACCGGTGGA-----------------------GGCGCGGCGGTTCAAGGCGTGGCGGCGGCTGAGCACAGCGGATCAG
G-CCAACGCAACACGAGGCCACGGTGGCAAGGTGACCCAAGGTGTCCTCCCCAACGACGGAGTAGCACTTTTCTTCCTTT
CTTTGATTCCTTCGATCTTCATGTGAATTAA-------------------------------------------------
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>chr4B_1
TGACAAAAAGTAAATTGGATGGATATCACCTGATTTATTTAGAAGATTTGCGATCCGCGTATAATAGCTGCCGGATTGTC
CGGTTGATGAGGTAACCATCAACATGCTCCTCATCAGATAGGGAATCAAAATTATGCGCCAGTCAGGTCTCAGAGGTGTC
CAGCCGGTGGACTCCGCTCGTATCCGTCTATCCACTGGAAACT-------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
CACCCGAGCCATGGACCTTATGTGTATAGCAACGAATGCAATTTTGATCCCACATGGGCTGCATCTAATGCCACTTTAGA
ACCGGTCAAACCTTGCTTTTCTCTCCGTCCGCACACACTCTTTTTTTAAGCAGATCAGTGGCGCATAGTGCTACAGCAGC
ATAACTTCCCTCGGTGGATGGAACTTCTCGTGGTGGTAAATAGGTAGAGGCGAGGTCGACCCCGAGCCCGACTCGAAGAA
ATGTCGGTGGATGCAGTGTGCGTGGCTGCGCCGCAGCGCGGCGGTTCAAGGCGTGGCGGTGGCTCAGCGCGGTGGCTGAG
G-CTAACGGAACACGAGGCCATGGTGGCAAGGCGACCCGGGGTGTCCTCCCCAGCGATGGAGTAGCACTTTTCTTCCTTT
CTTTGGTTCCTTCAATCTTAGCGTGAATTAA-------------------------------------------------
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>chr7A_5
----AAAAACTAAACTAAATGGATATCACCTGATTTATTTCAAAGATTTACGATCCTCATATAATAGGTGCCAGCATGTA
TGGTTGATGAGGTAACCAGCAACATGTTCCTCGTCAGATAGGGAATCGAAATTATGCGCCAGTCAGGTCTCAGAGGTGTC
CAGCCGGCGGACCCCGCTCGTATCCATCAGTCCACTCGAAA---------------------------------------
--------------------------------------------------------------------------------
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-ACCCGAGCCATGGCCCTCATGTGTATAGCAACGAATTCTATTTTGATCCCACGTGGGCTGCATCTAATGCC-CTTTAGA
ACCGGTCAAACCTTGCTTTTGTCTCCGTCCGCACACATTG-TTTTTTGAGTAGATCAGCGGCGCATAGTGCTACAGCAGC
AAAACTTCCCTCGGTGGATGGAGCTTCTCGTGGTGGCAACTAGGTAGAGGCGAGGTTGACCCCAAGCCCGACTTGAAGAA
ACGCCGGTGGAGGCGGG--GCATGGCCGAGCCGCGGCGTGGCGGTTCAAGGCGTGGCAGC-------------AGATTAG
G-ACAACACAACACGAGGCCACGGTGGCAAGGTTACCCAAGGTGTCCTCCCCAGCAACGGAGTAGCATTTTTCTTCCTTT
CTTTGATTCCTTCGATCTTCGCATGAATTAA-------------------------------------------------
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>chr3D_627
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-----------------------------AAGGAAAAGTGTTCGTTTCAACCGGCTGATTTCACAGCTTGCTAAGTCGCG
CGCTATGCTCGCCACGTGTATGTGAGGCCCACCCACCGCCTGCGGACCACCCCATCCTTATCTCCGGTGGCGCACGTGAA
ACCACCCATTCCTTATCTCTTTTCTCCAGAT-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------CCCCTTCGTCTCCATCGTTCCTCTCTCCTGCTGCTCCTCGCCATGGACATGCTT
CTCCTTTTCTCTGTCGCTACTGTTGTTGTTGTGAGAGATACGACCATCATCTGCTGGAG---------------------
----GCGTTGGGCTACAGACGGGCAGCCGCTCGCCGG------------------CCCGTGGTGCAAGGGGGGCTCGATG
CGGCGAGCTGCCCGGAGATGCAATGGAGCGTGCGCCGCTGCGACGATGTCCACGAAGATTGGCCGACGGGGGCTCTGCAA
CTCTGGCGATGCTGCCTTGAAGCCGTTCGGGAGCACCGTCGGTGTTGCAATGGAGCAACGTGGGGCCGCCGGAAGCAGAG
ACGGCGCTGCAGTGATGCCTCGCCGGAGTTGCAATGGAGCTTCGCCGGACGCGTCGGTGTTGCTCTTGGAGCTCCGCAGG
TGCTGCGATGGAGCTTTCCCGGACGCGTCGGCGCTGCGTTGGAGCTCGACCGGTGCTGCTTTTGCTGTGATGCTACTCGT
CCACGACAGTCGGCATCGACGGCCGCTGCATCACAGCTCTGGCGACGTCACGGCCACTGCATCGCACCTCCGGCGGCTTC
TGCATAGCAGCTCCAACGACGCCGGCGGCCGCTGCATCACAGCTCCGGCGGCATCGACGCCTGCTGCATAGCCGCTCCGG
CGGCCTCGACAACCGCTGCATAGCAGCTCCGGCGGTGTCGCAGCCGCTACAGTGCAACTCCGGTGGCGTCTATGAGCGCT
GCATCGCAGCTCCGGCAGCGTCGGCGCCCGCTGCATCACAACTCCAACGGCCGTTGCATTACAGCTCCGGCGTCGTCGAC
GCCCGCTGCATCACAGCTCCAACAGTCGATGCATCGCAGCTCTGGTGGTGTCGCAGCTGCTGCCGCCGAGCTGGTAGGTT
TGCTTAGAGCGTGACTATGGGCGCTGCATGGGTGGTGCCTGTGTTAGCGCGAGAGGGAAGATATTGACGGGAAGTGCGAT
CCGTGAACGGCTACGATGTGCATAATCGGACGGTTACCAAGGCGGCTGATAACTCGCAGTTATCATCCGGTTTACGCCTA
GCATCG--------------------------------------------------------------------------
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>chr5A_632
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----------------------------------AAAGTGTTCGTTTCAACCGGCTGATTTCACAGCTCGCTAAGCCGCA
CGTTATGTTCGCCACGTGTATGTGAGACCCACCCACCGCCTGCGGACCACCCCATCCCTATGTCTAGTGGCGCACGTGAA
ACCACCCATTCCTTATCTCTTTTCTACATATCCTCTTCGGGGCTGTTTGGATCGACGCCCTCATGCGCCAAGCCAAAAAA
TTGGTTGTTGACCCAGCCTGGGCACTCCTTTGGATGGATGCCAAATTATTGCCGCGCCCACGCCTACACAGCAGCCCCAG
TTCAATTCTGAGCCAAAGTTTTGGCAAGGCGTGGGTGGCGGATTCCTTCGCCAATTAATTGGCGAGCCAACGTTTGGCAT
GGCGAGCAATGGCTCAATCCAAACAGCCCCTTCGTCTCCATCGTTCCTTTCTCCTGCTGCTCCTCGCCATGGACATGCTT
CTCCTTTTCTCTGTCGCTACTGTTGTTG-------------------------CTGTGAGAGATACGGCCATCGTCTGCT
GGAAGCGTTGGGCTGCAGACGGGCAGCCGCTCGCCGGTCACTGCAAGAGGGGACACCCGTGGTGCAAGTGGGGCTCGATG
CGGGGAGCTTCCCGGAGATGCAATGGAGCGCGCGCCGCTGCGATGATGTCCACGGAGATTGGCCGATGGGGGCTCTGCAA
CTCTGGCGATGCTGCCTTGAAGCTGTTCGGGAGCACCGTCGGTGTTGCAATGGAGCAACGTGGGGCCGCCGGAAGCAGAG
ACGGCACTGCAATGAAGCCTCGCCGGAGTTGCAATGGAGCTTCGTCGGACGCGTCGGTGTTGCA-TTGGAGCTCCGCAGG
TGCTGCGATGGAGCTTTGCCGGACACGTCGGCGCTGCGTTGGAGCTCGACTGGTGCTGCTCTTGCTGTGATGCAAATCGT
CCACGACAGTGGGCATCGACGCCCGCTGCATCGCAGCTCCGGCGACGTCGCGGCCACTGCAACGCACCTCCGGCGGCATC
GGCGACCACTTCATCGCAGCTCCGGCGGCCGCTGCATCGCAGCTCCGGCGGCATCGACGCCTGCTGCATAGC-GCTCCGA
TGGCATCGACAACCGCTGCATAGCAACTTCGGCGGTGTCGCGGCCGCTACAGTGCAACTCCGGTGGCGTCGATGAGCGCT
GCATCGCAGCTCCGGTAGCGTCGACGCCCGCTGCATCACAACTCCAACGAGCGTTGCATTGCAGCTCCGGCGTCGTCGAT
GCCCGCTGCATCACAACTCCGGCAGTCGATGCATCGCAACTCTGGTAGTGTCGCAGCTGCTGCCGCCGAGCTGGTAGGTG
TGCTTGGAGCGTGACAGTGGGCGCTACATGGGTGGTGCCTGTGTTAGCGCGATAGGAAAGATGTTGACGGGAAGTGCGAT
CCGTGAACGGCTACGATGTGCATAATCGGACGATTATCAAGACGGCTGATAATTCGCAGTTATCATCCGGTTTACACCTA
GCATCGGCC-----------------------------------------------------------------------
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>chr7D_1797
CGA-----------------------------------------------------------------------------
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-----------TTAAAATTGGGTC-ATCCAATTTTGACTGGGTCAACAATTTCTCAAG---CTC-----TTCTATTCAAT
TCTTTTATTTCACTATGTTCCCTAATTTCGATGCTCTTTTATTCAATTGACGTATTCAATTTTGGATTTGGTTTACGA-T
TTTGACCGGGCCAACAATATTTCAAATCAATC-AGCAGCAACCGGCCTATAAAAACAT--CAATCCTACGCACCCTCTCA
CCACCTAGA-AAAA-GTAGCATCA-CCATGTGATATTGTAGCACTAATATAGTAAATGCAACCACCGACACAAAATTT-T
CCCCACATAAATATAGCTTGGTTAGCGCATAGGACAGAATCACATCAC-GAA-AGAACCACAAAATCATCGTATTATAAA
TAAAAATAAAACACACTCTATCATCTCCCCCACCCACCAAAATAAAATTTCCACACGTTCTAGAATATAAAGGGTATTAG
-TTTTCTGGAGAGTCAAATTTCTTTAACTTTGACCATGTTCACAG--CAAAAATATCAACATCCACAAT---ATTAAATA
AA--ATA---A----GTATGGAAATTCATTTCATGATGAATCTAAAGAATACCGATTTGGTATTATGAATTTTGATATAT
TTTTC--TACAAATTTGATCAAATTTAAA-AGGTTTGACTTTAAAAAAAAAGTA-ATACACCTTATATTTCGAAACA---
-GAG---TGA-----TTTTTTT---AAGAAACCCATCAACACCAACGGTGCAGCAAAGTGCGCCCAACCCTTCTAGT---
--------------------------------------------------------------------------------
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>chr3A_1799
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----------TTTAGAATTGCGTC-ATCCAATTTTAACCGGGTCAACAATTTCTCAAG---CTC-----TCCCATTTAAT
TCTTTTAATTCACCATGTTCCGTAATTTCAAAGCTCTTCCATTCAATTGAGGTATTCAATTTTGGATCTGGTTTACGA-T
TTTGATCGGGCCAACAATTTTTCAAATCAATT-AGCAGCAACCGGCCTATAAAAACATATCAATCCCACGCACCCTCTCA
CCACCTAGA-AAAAAGAAGTGTCA-CCATGTGATATTGTAGCACTAATATAGTATATGCAAGCACCGACACAGAAATT-T
CTCCACATAAATATAGATCAGTTAGCGGATAACACATAATCACACCAC-AAATAGCCCCACCAAATCAACGCATTATAAA
TAATAATAAAAAACACTCTATCATCTCCCCTACCTACCAAACTTAATATTCCATCAGTTCCAAAATATAAAGGGTATTAG
-TTTTTTAGAAAGTCAAATTTCTTTAAATTTGACCAAGTTGAGAG--AAAAAACATCGACATTCACAAT---ATTAAACA
AA--A-A---ATA---TATGAAAATTCATTTCATGATGAATCTAAA-AATACTGATATGATATTATGGATTTTGATATAT
TTCTC--TACAAATTTGATCAAACTTAAA-ATGTTTGACTTTCC-AAAAAAGTA-ATACACCTTATATTTTGAAACA---
-GTGAT-----TAGTTTTTTTT---TAGAAACCCAACAACACAAACGGCGCAGCAAAGCGCGCCCAACCCTTCTA-----
--------------------------------------------------------------------------------
----------------------------
>chr7A_1799
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----------TTTAGAATTTGGTC-ACCCGATTTTGACCGGATCAACAATTTCTCAAGGAGCTC-----TCCCATTCAAT
TCTTCTAATTCCCTGTGTGCTCTAATTTTGAAGCTCGTTCATTCAATTCAGGTATTCAATTTTGGATTTGCTTTACGA-T
TTTGACTGGGCCAACAATTTTTCAAATCAACC-AGCAACAACTAGCCTATAAAAACCTATCAATCTCGTGCACCCTCCCA
ACACCTAGAAAAAA---AGGGCCA-CTCTGTGATATTTTAGCACCAATATAGTACATGCAGCCACCGACGTAGAAATT-T
CCTCACATAAATATATGTTGGTTAGCGGATAACACATAACCACACCAC-GAAAGGCCC-ATCAAATCACCTCATTACAAA
TAAAAATAAAACACACTCCATCATCTCCCCCACCCGCCAAACTAAATATTCCATTAGTAACAAAATATAAGGAGTATTAG
-TTTTTTGAAAAGCCAAATTTTTTTAACTTTGACCAAGTCCAGAGC-AAAAAATATCAACATCCACAAC---ATTAAACA
AA--A-A---A----GTATTAAAATTCATTTCATGATGAATCTAAT-CATAATGGTTTGATATTATGGATTTTGATATAT
TTCTC--CACAAATTTGATCAAACTTAAA-AGGTTTAAATTTTC-CAAAAAGTA-ATACACCTTATATTTTAAAATA---
-GAA---TGAGTAATTATTTTA---AAGAAACCAAACAACACAAATGGCGCATCAAAGCGCACCCAACCCTTCTTGTCT-
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>chr5D_1799
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----------TTTAGAATTGGATCAGCCTGATTTTGACCGGGTCAACAATTTCTCAAG-AGCTC-----TCCCATTCAAT
TCTTTTAATTACATATATTTCC--ATTTTGATGCTCTTTCATGCAATTGAGATATTCAATTTTGGTTTTGGCTTACAA-T
TTTGATCGGGTCAACAATTTTTCAAATCAATC-AGCAGCAAGCGCCCTATAAAAATATGTCAACCCCGCGCACCCTCCCA
CCACCTAGAGAAAA-GAAGCATCA-GCATGTGATACTGTAACACCAATATAGTGCATGCAGACCA--ACGCATAAATT-T
CCTCACATAAATATACGTTGGTTAGCGGATAAAACATAACTACACTAC-AAA-AGACACATCAAATCACCGCATAATAAA
TAAAAATAAAACACACACCTTCATCTCCTC-ACCCGTCAAACTAAATTTTCCATCAGTTCCAAACTATAAAGGGTACTA-
-TTTTTTGGAGGGTGAATTTTCTTTAACTTTGAACAAGTTCAGATC-AAAAAATATCGACATGCACAAT---ATTAAAC-
AA--A-A---A----GTATGGAAATTCATTCCATGATGAATCTAAT-CGTACCGATTTCATATTATGAATTTTGATATAT
TTCTC--TACAAATTTGATCAAACTTAAA-AGGCTTGACTTTTC-AAAAAAGTA-ATACACATTATATTTTGAAACA---
-GAGAAGTAA-----TTCTTTT---AAGAAACCCAACAACACCAACGGCGAAGCAAAGCGCGCCCAACCCTTCTAGTACT
AACTAA--------------------------------------------------------------------------
----------------------------
>chr7B_1799
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----------TTTAGAATTGGTTCAACCCGGTTTTGACCGGATCAAGAATTTCTCAAGG--CCC-----TCCCATTCAAT
TCTTTTAATTCCCTATGTTTCC--ATTTTGAAGCTTTTTCATTCAATTGGTGTATTCAATTTTGGATTTGGTTCATGATT
TTTTGCCGGGCCAATGATTTTTCAAATCAATC-AACAACAGCTGGCCTATAAAAACATATCAATGATGCGCATCCTCCCA
CCACCTAGAGCAAA-GAAGCGTCA-CCATGTGA-ACTGTAGCATCAATATAGTACATGCAAACACTAACATAGAAATT-T
CCTCATATAAATATACGTTGGTTAGTGGATAACACAAAACCACACCAC-AAA-AGACCCATCAAATCATCGCATTATAAA
TAAAAATAAAACACACTCCATCATCTCCCCCACCCTCTAAACAAAATATTCCTCTACTTCCAAAATATAAGGGGTATTAT
TTTTTTGGGAAAGTCAATTTTGTATAACTTTGACCAAGTTTAGAGC-AAAAAATATCGACATCCACAATAATATTAAACA
AA--A-A---G----GTATGAAAATTCATTCCATGATGAATCTAAT-CATACCGATTTGATATTATGAATTTTGATATAT
TTGTC--CACAAATTTGATCAAACATAAA-ATGTTTGACTTTTC-AAAAATTAATATACACCTTATTTTTGAAG-TG---
-GAG---TA---AGTATTTTTC---TTAAAACCCAACAACACCAACGGTGCCGCAAAGCGCGCCTAACTCTTCTAGT---
--------------------------------------------------------------------------------
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>chr6A_1799
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----------TTTAGAATTGGATCAACTCAATTTTGATCGGGTCAATAATTTCTCAAA-AGCTC-----TCCCATTTAAT
TCTTGTAATTCCCTATATTCCC--ATTTTGAAGCTCTTTCATTCAATTGAAGTATTCAATTTTGGATCTGGTTTACGATT
TT-GATCGGACCAACTATTTTTCAAATCAATC-AACAGCAATGGGTCTATGAAAATATATCAATCTCGTGCACCCTCCCA
CCACCTAGAGAAAA-GAAGCGTCA-CCATGTGATCATGTAGCATCAATATAGTACATGCAGTCCA--ACGCGG-AAAT-T
TCCCATATAAATATATGTTGGTTAGCGGATAACACAAAACTACATCGG-GAA-AGGCCCATCAAATCACTGCACTATAAA
CAAAAATAAAACACACTCCGTCACCTCCCC-ACCCGTCAAACTAAATTTTCCATCAGTTCCAAAATATAAGGTGTATT-G
-TTTTTTGGAAAGTCAGTTTTCTTTAACTTTGAACAAGTTCATAGC--AAAATTATCGACATCCGCAATATTAAACAA-A
AA--A-A---G----GTATGAAAATTCATTTCATGATGAATCAAAT-CATACCGATTTGATATTATGAATTTTGATATAT
ATCTC--TACAAATTTGATTAAACTTAAA-AAAATTGACTTTTC-AAAAAAGTA-ATGCACATTATTTTTTAAA-CA---
-GAG---TG---AGTAATTT-----AAAAAATCCAACTACACCAACGACGCAGCAAAGTGCGCCCAACCCTTCTAGT---
--------------------------------------------------------------------------------
----------------------------
>chr2A_1799
--------------------------------------------------------------------------------
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----------TTCAGAAGTGGATC-ACTCCATTTCGACCGGGTCAACAATTTCTCAAGGAGCCC-----TCCCATTTAGT
TCTTTTAATTTGCCATGCTCCCTACTTTTGAAGCTCCTTCATTCAATTGAGGTATTCAATTATGAATTTAGTTTACGATT
TT-GACTGGGCCAACGATTTTCCAAATCAATCCAGCAGCAACCGGTTTAGAAAAACATATCAATCCAATGCACCCTCCCA
CCATCTAGAAAAAA-GAAGTGCCA-TTGTGTGATATTGCAGCACCAATATAGTACATACAGCCAACGACATAGAAATT-T
TCCGACATAAATATAGATTAGTTAGCGGATAACACAGAATCACACCAC-GAAAGACCC-ACC-AATCACCATATTAGAAA
TAAAAATAAAACACACTCCATCATCTCCTTCACCCGGCAAACTAAATATTTCAACATTTCCC-AATTTAGGGGGTATTAG
-TTTTTTGGAAAGTCAAATTTCTATAACTTTGAACAAGTT-AGAGC-AAAAAATATCGGCATCCATAAT---ATTAAAC-
CA--A-A---AAGTAT----GAAAATCATTTCATAATGAATCTAAG-TATAGCGATTAGATATTACGGATTTTGATATAT
TTTTC--AATAATTTTATCAAACTTTAAA-AGGTTTTACTTTTT-TAA----TA-ATATACCTTATATTTTGAAACA---
-GTG---TGAGCT--TTTTTTA---AAGAAACTCAACAACACCGACGGCGCAACAAAGCGCATCCAA-------------
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>chr3B_1806
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-----------------TTGGGTC-ACTCGATTTTGACCGGGTCAACAATTTCTCAAGGAGCC-------CCCCATTAAT
TATTTTTATTCTCTATGTTACCTAATTTTAAAGCTCTTTCATTCAATTGAGGTATTCAATTTTGAAATTGGTTTACCATT
TT-GACTAGGCCAACGATTTTTTAAATTAATC-ACCAGTAACTGACCTATAAAAACACATCAATCCCTC-CAGACTCCCA
TCACCCAGAAAA-A-G---TGCCA-CCATGTGATACTGTAGCACGAATATAATACATGCAACCACCGACGCAAAAAAAAT
TCCCACATAAATATGGATTGGTTAGCGGATAACACAAAATCATACCGC-GAA-AGGCCCACCAAATAACTGCATTATAAA
TAAAAAGAAAACACACTCCTTCATCTCCCCCACTTG-CTAACTAAATATTCCATCAGTTTCAACATATAAGGGGTATTAG
-TTTTTTGGAAAGTCAAATTTCTTTAACTTCGACCAAGTTTAGAGC-CAAAAATATCGACATCCATAAT---ATTGAAC-
AC--A-ATT--AA---TATCAAAATTCATTTCATGATGAATCTAAT-AACACCAATTTCATATTATGAATTTTGAAATAT
TTTTG--TACAAATTTGATCAAACTTAAAGAGGTTTAACTTTTC-AAAAAATTA-ATACACCATATATTTTAAAATA---
-GAG---TGAGTAA------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr5A_1898
AATTG---------------------------------------------------------------------------
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--------------------------------------------------TGTATTCTAGTTTGGATTTGGTTTATGA--
TT-GACCGGGCCAACGATTTTTCAAATGAATC-AGCAGCAACCGGCTCATAAAAACATACCAATCCTGCGAACCCTCCCA
CCATTTAGAAAAAA-GAATTGTCACCCATGTGATACTGTAGCGCCACTATAGTACATGCAGTCATAGACACAGAAATT-T
TCCCACATAAATATAGGTTGGTTAGCAGATAACACGGAATCACACCAC-GAA-AGGCTCACCAAATGACCGCATTATAAA
TAAAAATAAAACACACTCCAACATCTCCCC-ACCCCGCAAACTAAATATTCCGTTAGTTTCAAAATGTAAGGGGTATGAG
-TTTATCAGAAAGTCAGATTTCTAAAACTTGGACCAAGTTCAGAGCAAAAAAATATCGACATCCACAAT---GTTAAAC-
AA--A-A---AAGAAGTATGAATATTCATTTCATGATGAATCTAAT-CATACCGATTTGACATTATGGATTT-GATATAT
TTCTCTACAAAAATTTGATGAAATTTAAA-AGGTTTGACTTTTC-AAAAAAGTA-ATACACCTTATATTTTGAAACA---
-AAG---TGAGTAC---TTTTT---AAGAAACCCAACAACACCAACGGCGCAGCAAAGCGCTCCCAACCCTTCTAGT---
--------------------------------------------------------------------------------
----------------------------
>chr1A_1898
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--------------------------------------------AATTGAGGTATTCAATTTTGAATTTGGTTTACGATT
TT-GACCA-GCCAACAATTTTTCAAATCAATC-AGCAGCAACCGGCCTATAAAAACATATCAATCTCCCGCACCCTCCCT
TCACTTGGAGAAAA-GAAGTGTCA-CCATCTGATAGTGTAGCACCAATATAGTACATGCAGCCACCGGCGTAAAAATT-T
CTCCACACAAATATACGTTGGTTAGCGGATACCACAGAACCACACCGT-AAAAGGCCC-ATCGAAT--CTGCATTATAAA
TAAAAATAAAACACACTCCAATATCTCCCCCACCTGTCAAACTAAATATTCCATCAGTTCCAAAATATATGGGGTATTAG
-TTTTTTGGAAAGTCGATTTTTTTTAACTTTGACCAAGTTCAGAGC-AAAAAATATCGACATCCACCAT---ATTAAAC-
AA--A-A---AAA---TATGGAAATTCATTTGATGATGAATCTAAT-AATACCAATTTGATATTATGAATTTTGA---AT
TTCTC--TACAAATTTGATCAAACTTAAA-AGGTTTGACTTTTT-AAAAAAGTA-ATACACTTTATATTCTGAAACA---
-GAG---TGAGTAA-TTTGTTT---AAGAAACCCAACAACACCAACAGCACTGCAAAGCGCACCTAACC-TTCTAGT---
--------------------------------------------------------------------------------
----------------------------
>chr4D_1899
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---------------------------------------------ATCGAGGTATTTAATTTTGGATTTGGTTTACGATT
TT-GACCGGGCCAACGATTTTTCGAATCAATC-AGCAGCAACCGGCCTATAAAACCATACCAATCCCGTGCACCCTCCCA
CCTCCCAGAAAAAA-G---TGCTA-TCATGTGATACTATAGTATCAATATAGTACATGTAGTCACCGACGAAGAATTT-T
CCTCACATAAATATACGTTGGTTAGAGGATAACATAGAACGACACCACGAAA-AGACCAATCAAATCACCGCATTATGAA
TAAAAATAAAACACACTCCATCATCTCCCTCACCCGCCAAACCAAATATTCCACCGTTTCCAAAATATAAGGGGTATTAG
-TTATTTGGAAAGTCAAATTTATTTAACTTTGACCAAGTTCAGTGC-AAAAGATATCAGCATCCACAAT---ATTAAAC-
AA--A-AGTGG----GTATGGAAATTCATTTCATGGTGAATCTAAC-CATACCAATTTTACAT-ATGTATTTAGATATAT
TTCTC--TACAAATTTAATCAAACGTAAA-AGGTTTGACTTTTC-ATAAAAGTA-ATACACCTTATATTTTGCAACA---
-GAG---TGAGTAT---TTTTTTAAAAGAAACCCTACAACACCAATGACGCAGCAAAGTGTATCCAACCCTTCTAGT---
--------------------------------------------------------------------------------
----------------------------
>SNPs
-----------------------------S-----------------------------------------S--------
--------------------S-----------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------S-----------------------------------------------
-------------------------------------------------S------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
---------------S-----------------------S----------------------------------------
-----------------------------------------------S----S---------------S-----------
----------S-------------------S---------S------S------------S-------------------
---S--------------------------------S------S-------------------S-----------S----
-------------------------------------------------S------------------------------
----------------------------------------------------S----------SS---------S--SS-
--------------------------------------------S---------------------------------S-
-----------------------------S---------------------------------------S----------
------------SS----------S----------------------S--S-----------------------------
-------S------------------------------------------------------------------------
--------------S---------------------------------------S-------------------------
---------------------------S-------------------------S----------------S---------
---------S-----------S------------------------------------------SSSSS---S-------
------------S--------------------------------------S----------------------------
---S------------------------------------------------------------S---------------
---------------------------------------------------------------------S-S--------
----------------------------------------------------------S---------------------
-----------------------------------------------------------------------------S--
-------S-S--SSSS---------S-----------------------------------------S------------
-SSS----------------------------------------------------------------------S-----
--------------------S-----------------------------SS--------S--------------S-SSS
S------------------------------S-----S-----------------------------------------S
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_512
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------TTGCTTTTGTCTCCGTCCGT------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2088
--------------------------------------------------------------------------------
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-------CCATCACAGCTCCGACAGTC-----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------
>forward_1531
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------GCTCTGCAA
CTCTGGCGATA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3176
--------------------------------------------------------------------------------
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-------------------------------------------------------CCTCATCAGAGTGGAGCACG-----
----------------------------
