>input_sequence_73095
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----------------------------------------ATGGAGCAGCCTATAGGCAATCCGAGTGAGCTGTGGAAGA
GCCCCAGGGGAACAGTGATTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCTCCTTCTTCTTTGTGGCTTTTGGG
TCCAGCTGCCGCTGGTCCAACCGTTGGATCATTCAAAAAGGTGTCTTGGCTGCAAATGCATTATCTTTGTCCCTTAGGAC
ATATAGCATTGGCCTGATGCAGTCCTCACCGGTGAAGAGTGAGATGTACCCCATCTGGGCCGTATCCTTGCTCACCCTCT
TCGGCAGCATTAACTCAGTCAATGGGTACAATCTTGACCACAACAACCAGTTGTTGAAGCTGCTATACCAGCTCTGCCTC
TATTGTGGATATGTCCTGCTAATTGGTATCTCCACCATCTCCAGTGATGTAGGTAACATTGCAATCGGTGTTTTGTGTGC
CATCACTTTCATTAAGGGTTTTCATAGATCACTGCTAGCAAGTGTGTTGCCGAGCCGATTGCGGAGTGTGAATAAATTGA
TTGCTGATTGCATGGAGTCAGAAAAGATTAAGGCTACAGACAGACTTTGCGGATGGTCACTTGGCACTGGCAATTTAACC
GCCACGATAGATTGCCCTATTTACGTGGTCGACTGGCATTGA--------------------------------------
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>chr3B_1_TraesCS3B01G604200
GGTAGAAAGCTAGCCGCCTTTCCTTGGGAGGAGAGATGAAGGGAACTGAGACGCCGTGGTTATGATTATTAATGGTATAT
GTTTGCTTAGTTAACAATAAGCTGCTACTGCTGCAAAAGAAAGAAAGAAAAACAATATTCCCCTACATACTTATTGCTTT
GATGTTAAAACGTTTGTCTCATTCTCTTTCCCTCAAAAAAGTTTGCGAGTCTCATTAGCTTATTTTACTGTGTAAGAAAA
TGGAAGGAAATGTCCTTCTCATTCACTTAAACATGGCAATGACATATGTCTACCAATGGTCCAGACCATTACTCCATTAC
GCCATTACTGATGTCTGTCCTTGTATCTTCCCTCCCTATCTGCTCGCTCCAGAAAAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGATGCCCCAGATCCAATCGGACTCCTCCTCGCCACTGCCTCCGGCCAGCTACTGGTGGCTTT
GCCCGGAGAGAGCCCTTCCCATTCCCATCGCGAGCTCCATAGCAGCAAACCACCGACCAGGAAGAAGGCTGTTCGGTGCA
TCATATCATCTTCCTCCCTGTCTACCGAGGCAGAGGCGGCCAAGCCGGATTGATTCAGCTACAGCGAAGAAGAAGAATTC
CTGGTACTCATGCAATTGCTGTTATGGTTTTGGTCTTATAATAAACTAACTCATGCGGTATCCGGTGATGGTACGATTGT
TATTGTTGGAATATTAATTTTGTTTTCTTCGAGGAAAAACTACTACCATGTCTACCAAGATACTAGCAACAACAAAGTCT
TTCTCTAGCAAGAAAGCCTGAGTAGCATTTAAACTAGAGATTAGCCTCCCCTGCCTTATGAACATGATTTCCTTCAAGTC
ATGCCCCCCTGGAAATTATGCTCATGCTCAACAACTGCTCACTTGGTAGTTAACGACCTTACCATAACTACAAATATGCT
TCTTTCAGGGTGGATTCTGGGTGGCGGTAGAGAAGGGGTCATGGAGCAGCCTATAGGCAATCCGAGTGAGCTGTGGAAGA
GCCCCAGGGGAACAGTGATTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCTCCTTCTTCTTTGTGGCTTTTGGG
TCCAGCTGCCGCTGGTCCAACCGTTGGATCATTCAAAAAGGTGTCTTGGCTGCAAATGCATTATCTTTGTCCCTTAGGAC
ATATAGCATTGGCCTGATGCAGTCCTCACCGGTGAAGAGTGAGATGTACCCCATCTGGGCCGTATCCTTGCTCACCCTCT
TCGGCAGCATTAACTCAGTCAATGGGTACAATCTTGACCACAACAACCAGTTGTTGAAGCTGCTATACCAGCTCTGCCTC
TATTGTGGATATGTCCTGCTAATTGGTATCTCCACCATCTCCAGTGATGTAGGTAACATTGCAATCGGTGTTTTGTGTGC
CATCACTTTCATTAAGGGTTTTCATAGATCACTGCTAGCAAGTGTGTTGCCGAGCCGATTGCGGAGTGTGAATAAATTGA
TTGCTGATTGCATGGAGTCAGAAAAGATTAAGGCTACAGACAGACTTTGCGGATGGTCACTTGGCACTGGCAATTTAACC
GCCACGATAGATTGCCCTATTTACGTGGTCGACTGGCATTGAACATGTC-------------------------------
------------TAATGGAGTCATCACCACCGATGATATATGGCATTGCGCCA---GTTCACCGGGATCGATTGCAAATT
CTTATAAGGATGTTTGCATCTCCTTCTCCCTATGTCATTTATTGCAACGACGTTTCTTCGGGTACACAAGTGATGATGAG
TTCACCAAGGGCTTGGCCAGGGAGTTTTTCAAAAAAATTGTGCTTGCTGAAATGGA-----TGATGATGACAGTGGGTTT
GTCGATGGTGAGAGGGCTTTTAAGGTCATTGAGGTAGAGTTGGCGCTTTTCCCTATGATCTATTCTTCACCAACAATGCT
TTCCTTCAATATCATGAATCGAAAGTGGCAACAATTTGGACCTTTGCTTCAATAGCCGGTATATTTTTTGTGGGAATAGT
GACTGTCATACCCGGGACATGGACAACACATATTTCTGGTGGTACAGTTGTTGTGACTACCACACCCTATGACCTTGTTA
TCACGCTTGTAATACTGGCGTCTATTGCTTTGCTCCAAGTGATGCAGTTGGTACGGTGCTGGACATCCAACTGGGCTAGA
CTTGCCCTGGTGTTCCAGTCTATCAGAAATAAGGGAGAGGAGTGGGGCTGTCTAATGAGGCTAAAAGCATTT-----CAG
GATTAATTGGTTCGACGGTTATGCCTGGCAAGGTAAGCTTGGGCAATATTCATTTGTCGAATCAATTAGCACAAAAGAGT
GTGTGATATCGTGGCATGTAGTTTTTCCACTCGGAATTCGCGTCTTTTTTGCAAGGATGCTTGGGTTGCAGTACATTGCA
CATGTTTACAGGGAAATGTTTGATGGTCCTGCAGGATTTAATCATGTCGTGTTGACCAAAGGTGTGAAGGAAGCCATTAT
TCTCTCTTATGAATACGAGCATCATGGGCGGATTTAGGCCCCAGGCAGCCCAGGCCATTGCCTGGGGCGTGGGGAATTTC
CTCAGCCTATATTTTAAAAAATATACAGTTCGGCCTGGGGCGCAGCCCAGTTCAAAGC
>chr1B_937
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--------------------------------------------------------CCTTACTATAGCTACATATATGTC
TATTTCAGGGTGCATTATGGGTGGCGGTGGAGAAAGAGGCATGAAGCAACCTTCAGGCAATCCGAGTGAGCTGTGGAAGA
GCCCTAGGGGAACAGTGATTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCTCCTTCTTCTTTGTGGCTTTTGGG
TCCAGCCGCCGCTGGTCCAACCGCTGGATCATTCAAAAAGGTGTCTTGGCTGCAAATGCATTATCTTTGTCCCTCGGAAC
ATACAGCATTGGTTTGATGCAATCCTCGCCGGTGAAGAGTGAGATGTACCCCATCTGGGCCGTATCCTTGCTCACCCTCT
TTGGCAGCATTGACTCAATCAGCGGGTACAGTCTTGACCACAACAGCCAGTTCCTGAAGCTGCTATACCAGCTATGCCCC
TACTGTGGATATGTCCTCCTAATTGGTATCTCCACCATCTCCAGTGATGTAGGTAACATTGCAATCGGTGTTCTGTGTGC
CATCACTTTCATTAAGGACTTTCACAGATCACT---AGCAAGTGTGTTGCCGAGCAGATTGCGGAATGTGAATAAATTGA
TTGCTGATTACATGGAATATCGTTTTTCACAACTAAATGGTCCTGATGATGTCAT-------------------------
--CATGAGAGATTACCCTAAGTACGTGGTCGACTGGCCCCTAGACAAGGCCGAGTCTGACCATTTCAAAAAAACAAACAA
CATATTGGATGGTAGTGAAGTCATCACCATAAACCAGATATGGCATTGCGCCATCGGTTCACCAGGATCAAATGCCAGTT
CTTACAAGGATGTTTGCCTCTCCTTCTCTTTATGCCATTTGTTGCAAAGACGTTTCTTCGGGTTCAAATGTGCTGAGTCC
AGCTTTGGTGA---GGCCCTAGATTTTATCAACAGAGGTTTGTTTGTACAAAGGGGCCGGGTGATGGTGC---------T
GTCGACTGCGAGAGAGCTTTTAAGGTCATCGAGGTTGAGTTAA--CTTTTCTCTATGATATTATTTTCACCAACAATGCC
TTCCTTCATTACTATGAATCAAAAGTTGCTACAATTTGGACATTTGCCTCAATCACCGGCATAATTTTTGTGGGAGTTGT
GACTGTCATGCCTGGGACAAGGAGAACACATATTTCCGGCGGCACTATTGTTGTGACTACCACACCGTATGACCTTGTTA
TCACACTAGTAATATTGGTCTCCATTGCTTTGCTCCAAGTGATGCAGTTGGTACGGTGTTGGACATCCAAGTGGGCTAGA
GTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGATGGAGAATGAGGTTACAAGCATTTATGTGCAG
GATTAATTTGTTCGACGGTTATGTCTGGCAGAATAAGCTTGGGCAATATTCATTTGTTGAATCAATCAACACAAGAGAGT
GTGTGCTATCCAAGTGCGTGGAACGTACATTCATGGAATGCATCACTTTTGCAAGGATGTTTGGGTTGCGGTACATTGAA
CAAGTTTATGAGGAAATGTTTGGTGGTCCTACGGGATTAAATCATGTTGTGTTGACCACACATGTGAAGGAAGCCATTGT
TGACTCTTAT----------------------------------------------------------------------
----------------------------------------------------------
>chr3D_938
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---------------------------------------------------------CTTACTATACCCACACATATGTT
TCTTTCAGGGTGGATTACG---GGGGGCGGAGAAGGAGGCATGGAGCACCATTTAGGCAATCTGAGTGAGTTGTGGAAGA
GCCCTAGAGGAACAGTGGTTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCTCCTTCTTTTATGTGGCTTTTGGG
TCCAGCCGCCGCTGGTCCAACCACTGGATGGTTCAAAAAGGTGTCTTGGTTGCAAATGCATTATCATTGTCCCTCGGGAC
ATACAGCATTGGCTTAATGCAGTCCTCGTCGGTGAAGAGTGAGATGTACCCCATCTGGGCCGTATCCTTGCTCACCCTCT
TCGGCAGCATTGACTCAATCAGTGGGTACAACCTTGACCACAACAGCCAGTTCCTGAAGTTGCTATACCAGCTCTGCCTC
TATTGTGGATATGTCCTACTAATTGGTATCTCCACCATCTCCACTGATGTAGGTAACATTGCAATTGGTGTTCTGTGTGC
CATCACTTTCATTAAGGGCTTTCACAGATCACT---AGCAAGTGTGTTGCCAAGCAGATTGCGGAATGTGAACAAATTGA
TTGCTGATTACATGGGAGAGAGCCATTCAAGAAGTCATGATGGTGACGTCATT---------------------------
---ATGAGAGATTACCCTAAGTACGTGGTCGACTGGCCCCTAG---------------ACCATTTCAGAAAAAGAAACAA
CATATTGGAGGGTAATAAAGTCATCACTACAAACAAGATATGGCTTCGCACCCTCACTTCATCAGGACGAAACACTGATT
CTTACAGGGATGTTT-------------------------GTTGCAACGGCGTTTCTTTGGGTTCGCATGTGCTGAGTCC
CGCCTTGATGA---GACCGAGGATTTTGTCAACAAAGGCCTGCTTGTACAAAGGGA-----TGATGGTAC---------T
GTTGACTATGAGAGGGCATTTAACGTCATCGAGGTTGAGTTGT--ATTTTCTCTATGACATATTTTTCACCAACAATGCC
TTCCTTCATTACTATGAGTCGAAAGTTGCAACAATTTGGACATTTGCCTCAATCATTGGCATAATATTTGTGGGAGTTGT
GACTATCATACCTGGGGCAAGAACAACACATATTTCTGGCGACACTATTGTTGTGACGACCACATCATATGACCTTGTCA
TCACTCTAGTAATACTGGTCTCCATTGCTTTGCTCCAAGTGATGCAGTTGGTACGGTGTTGGACATCCAACTGGTCTAAA
GTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGCTGCCAAATGAGGTTTAAAGCGTTTATGACCAA
GATTAATTTTTTCGCCGGCTATGTCTGGCAACGTAAGCTTGGACAATATTCATTTGTTGAAGCAATCAGCACAAAAGAGT
GTGTGTTGGCCACGTTTGTGAAACGTGCGTTTAAGGAATGCATCACTTTTTCAAGGATATTTGGGTTGCGGTACATTGAG
CAAGTTTATGAGGAAATGTTTGGCAGTCCTACAGGC---AATCATGTTCTGTTGACCGCACACGTGAAGGAAGCCATTGT
TGACTCTTAT----------------------------------------------------------------------
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>chr3A_938
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---------------------------------------------------------CTTACTATACCCACACCTATGTT
TCTTTCAGGGTGGATTACG---GGGGGCGGAGAAGGAGGCATGGAGCTCCATTTAGGCAATCTGAGTGAGCTGTGGAAGA
GCCCTAGAGGAACAGTGGTTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCTCCTTCTTTTTTGTGGCTTTTGGG
TCCAGCCGCCGCTGGTCCAACCACTGGATTGTTTAAAAAGGTGTCTTGGTTGCAAATGCATTATCATTGTCCCTCGGGAC
ATACAGCATTGGCTTAATGCAGTCCTCGTCGGTGAAGAGTGAAATGTACCCCATCTGGGCCGTATCCTTGCTCACCCTCT
TCGGCGGCATTGACTCAATCAGTGGGTACAACCTTGACCACAACAGCCAGTTCCTGAAGTTGCTATACCAGCTCTGCCTC
TATTGTGGATATGTCCTACTAATTGGTATATCCACCATCTCCACTGATGTAGGTAACATTGCAATTGGTGTTCTGTGTGC
CATCACTTTCATTAAGGGCTTTCACAGATCACT---AGCAAGTGTGTTGCCAAGCAGATTGCGGAATGTAAACAAATTGA
TTGCTGATTACAAGGGAGAGAGCCATTCAAGAAGTCATGATGGTGACGTCATT---------------------------
---ATGAGAGATTACCCTAAGTACGTTGTCGACTGGCCCCTAG---------------ACCATTTCAGAAAAAGAAACAA
CATATTGGAGGGTAATGAAGTCATCACTACAAACAAGATATGGCTTTGCACCCTCACTTCATCAGGACGAAGCACCGATT
ATTACAAGGATGTTTGCCTCTCCTTCTCCCTATGCCATTTGTTGCAACGACGTTTCTTCAGGTTTGCATGTGCTGAGTCC
CGCCTTGATGA---GACCGAGGATTTTGTCAACAAAGGCCTGCTTGTACAAAGGGA-----TGATGGCAC---------T
GTTGACTATGAGAGGGCATTTAACGTCATCGAGGTTGAGTTGT--ATTTTCTCTATGACATATTTTTCACCAACAATGCC
TTCCTTCATTACTATGAGTTGAAAGTTGCAACAATTTGGACATTTGCCTCAATCATTGGCATAATATTTGTGGGAGTTGT
GACTATCATACCTGGGGCAAGGAGAACACATATTTCTGGCGACACTATTGTTGTGACGACCGCATCATATGACCTTGTCA
TCACTCTAGTAATACTGGTCTCCATTGTTTTGCTCCAAGTGATGCAGTTGGTACGGTGTTGGACATCCAACTGGTCTAAA
GTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGCTGCCAAATGAGGTTTAAAGCATTTATGAGCAA
GATTGATTTTTTCGCCGGCTATGTCTGGCAACGTAAGCTTGGACAATATTCATTTGTTGAAGCAATCAGCACAAAAGAGT
GTGTGTTGGCCACGTTTGTGAAACGTGCATTCAAGGAATGCATCACTTTTTCAAGGATATTTGGGTTGCGGTACATTGAG
CAAGTTTACGAGGAAATGTTTGGCAGTCCTACAGGC---AATCATGTTCTGTTGACCACACACGTGAAGGAAGCCATTGT
TGACTCTTAT----------------------------------------------------------------------
----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S-----S-----S-
----------------S-----------S-------S-S---------S---S---------------------------
----S---------------------------------------------------------------------------
------S----------------S--------------------------------------------------SS----
---S---------S-------------S----------------------------------------------------
-----------S-----S---S-----------------------S------SS--------------------------
-----------------S------------------------------------------------------S-------
------------------S-----S--------SSS-------------------S---------S--------------
---------S------S-SSSSSS-SSSS--SSS--SS--SS-SSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--S--S-----S-----SS----------------SSSS-SSSSSSS-------------------------------
-----------------S------------SS-SS-S--------------------------S-----S-S---S----
----S------------S----------------S-----S----------------------S----S---S---SSSS
SS-SSSS-S-SSSS----SS---S---S----S---SS-S------SSS---S-------------S--SSSSSSSSSS-
-----SS----------------------S-----S------SSS------S-------S----S--------------S
--------S--SS-------------S--------------S-----S-----SS----S---S-----------S-S--
------------S------S-------------------S--S--SS-------------------S-------------
----S--S----------SS--S-----------------------------------S---------------------
S-------S----SS---------------SSS-SS-SSSSSS-------S-S-------S-------------------
--------S--------------S-------S-------------------------S--------S-------------
-----S----SSS-SS---S-SSSS-S--S--SSSSSSS--S--SS-------------S---------S--------S-
--S------SS-----------S-------S-------S--------S----------S-SS----------------S-
-SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_590
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----------TTCCTCCCTGTCTACCGAGG--------------------------------------------------
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>reverse_2275
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----------------------------------GAGAGGAGTGGGGCTGTCTA--------------------------
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