>input_sequence_73086
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-------------------------------------------------------------------------------A
AGATTCGTTCATGCATGTTCACATTGTCATTTCAGCGGAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTT
TTAATTATCTTTTTTTTTGTTTCCTTTCATCAAGAGCTATGCACATGCAGAGCAAATCACCAAACGCACAGCCCATCC--
-----------------CCTCCGC------------CCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGGAAA
ACAAAAACCACAC-CGAGCTGAGCCTACTGTGCTGCCTCTGCCTGCACCAACC---------------------------
-------------AAGAAAGCAAA-GCCCAATCAAGAAGAAGAAGG------AGAATGGGGGAGGCGCCGTGCAGCGTGG
TGGC---GCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTC
GGGAACGGTGGTGCCGGTGCCGGCGCACGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCG
GTGGTTCCGGAGCGCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCC
CGCCGTCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAG
TAG-----------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G312200
CAGTATAAGTTGGTTGCTTATACAAAATTCACAAGAAGACATGTTGCTTTCTTTTTTTTAGATGAAGACGTGTTGCTTTG
GAAACCACTGAATGGCATTGCTTGGTACTGTACTACTCCCTCTATCTTGAATTACTGGTCGCACTATCCATTTCTGTGAT
AAACAATTCGGAAAG--GAGTACGTTCAAAAAACCGTTAATGCATACATT---TACCTCTACAACTGCA-------ACTT
AATTTCTGCATAGGCAT--GAAAGGGTGAAGCCTGATACATCCAGGGAGCCACATTTTCTTATGAAAAGAAAAGAAACCG
AGTTGTGGTCGTACAAAAGAAAATTAAAGAT-----TGCATGCACATGATCCGTTGCACTTTTTTTAGCAGCTTTTTCGT
TTCTTTCTTTCCTCCCTTGTTCCATTTCACCTACCGTGAGCATGAGCCAATGGTCTGTCCTGACAAACGTGTTTGAACCA
CTACCGGTTGCCTGGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGC
TTTCCTGA---TATTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACACTG--------CTACTTAA
TTGGGATAAGTGTGGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAAAATCT
GTTCGCTTA-TGAGGCCAGAA------CAATTAGGAAGCCAACTTTTGTAGGAGAATATGATTCAGCTCTACGGCTCTAC
CAACAATTATGAGCTAGTACCAACTAGTGTAGTATTTATCAATATAATCAGACAGGTGCGTAATAATAATAATTACC-AA
AAAGGCAAAGAGAGGCAGGTATGTATGAAGTCACCTTCTGGTGAAATTCAGTACAATTATCAAGTAGTAGCTCTTTTCAA
AGACACATCTGAACTGCCTCAATTCTAATCGAATTGATTATCAATATAAAAA-AGACCCCACACGTATGTTCTTTTCCCA
AGATTCGTTCATGCATGTTCACATTGTCATTTCAGCGGAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTT
TTAATTATCTTTTTTTTTGTTTCCTTTCATCAAGAGCTATGCACATGCAGAGCAAATCACCAAACGCACAGCCCATCC--
-----------------CCTCCGC------------CCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGGAAA
ACAAAAACCACAC-CGAGCTGAGCCTACTGTGCTGCCTCTGCCTGCACCAACC---------------------------
-------------AAGAAAGCAAA-GCCCAATCAAGAAGAAGAAGG------AGAATGGGGGAGGCGCCGTGCAGCGTGG
TGGC---GCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTC
GGGAACGGTGGTGCCGGTGCCGGCGCACGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCG
GTGGTTCCGGAGCGCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCC
CGCCGTCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAG
TAGCTAAGCCTAGCTGGTGACGGTGCTGCCCTGTGAC------CATGAAGACAACAACACTAATGTATATA-CAGTACTC
ACTACTGCTCAATGGAGA-------AGTAGATTGATATGTAACGATT--TTTTTTAACCGCGACTCAAGCGATTCGTTGA
TGTCTGAAAGTCTGAAGATTGCATTGCT-ACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGCTCTGTTCCTTTTAAG
ATCTTTCTTTTTTTTTTGCTTCCAAAGCAGAGGCAAGTTCGGTGCTGTATG---GTACTGTGCTATAGCAATTCCAA---
----TCATGTTGCGAGTACAAACCATAGTTTGCTTGTGATCTACTAGTGGACGTGAGTAGTACATTTG---------TAC
TGCGAAACGATAATTGATCTGTGATTCCGTGCCCGGCCGATATTCTCGGC-------GTTGAGCGTCTGCTCCATGCTCA
CCAATAAATAATGCTGGAGAGAGACTACAAGCAATGAAGCAAAGCAAGAGTTGCCGAAATTCCGTGATCGTAAACTGCAA
GCAAAGCTAGTCGGCAAAGTTGTTGCAGAAATCCCATGTTCTGCTATACGGCACACCGGCCGATCCGCCATCGGCGCCGG
CCTCCATTCTGTGCAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGAAA
AAAAAGAGAGAGAGAGAAAAAAGGAGAGGATTGAAGTCGGGCCAGCCGAGGCGATGATGGAGCCGGGGTTGAACGAAGCC
GAGCCAACAGG----------------------------------AGATAGACGAGTTACCGGGTGGAGCACGCATGCGG
CATGTTGCATTGTTGCCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCC
TTGCACTGCCATGTGCA--------CCGCCCTGCCCTGCTGCTTGCCAATGCATTGCTAGCCCGGGCGCGGTGGGCAGGG
CA---TGCATGATGCGTCCTCATCAACGCCAGCCAA-ACCTACTACCCTCAT---GGCGCCG----TTGCATCCGCC
>chr2A_1
CAGTATAAGTTGGTTGCTTATACAAAATCCACAAGAAGACATGAATGC--------------------------------
-----------------------GGTACTGTACTACTCCCTCGGCCTCGAATTATTTGTCGCATTATTCATTTCTGCAAC
GAGTAATCCGGGACAGAGAGTACATTCCGAGGACCATTAGTCCATACATTTACTACCTCTACAACTGCAAAACGCTACTT
AATTTCTGCAGAGAGGCACGAAAGGGTGAAGCCTGATACATCCAAGCAGCCACATTTTCTTCTT--AAGTAAAGAAAATG
AGTTGTGGTCGTACAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACAC-TTTTTTAGCAGCTTTTTCGT
TTCTTTCTTTTCTCCCTTGTTCCATTTCACCTACCGTGAGCATGAGCATATGGTCAGTACTGACAAACGTGTTTGAACCA
CTACTTGTTGCCTGGACGTGTCAAGTGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACTAATGTACTGC
TTTCTGGATATTATTAATGTTT--GCTTCGAGCTTTACCTGAACTGTACGCTACACAAGCAGTACAGTAGTACTACTTAA
TTTGGATAAGTGTGGCTTTTCAGTTTAAATACGTTTGGCTATTCCACACTACATGCCATCCTCAAGCACTCTTAATTAAA
ATCTAACATGTGAGGCTAGAACAAATGCAATTAGGAAGCCAACTTTTCTAGGAGAATATGGTTCAGCTCTATGGCTCTAC
CAACAATTATGAGCTAGTACCAACTAGTGTAATACTTATCAATATAATCGGACATGTGTGTAATTACAAAAAAT---AAA
AAAAACAAAGAGAGGCAGGTATGTATAAAGTCACCTTCTGGTGAAACTCAGTACAATTATCA----GTAGCTCTTTTCAA
AGACACATCTGAACTGCCTCAATTCTAATCGAATTGATTACCAATATCCCAAGAGA-CCCACACGTATGTTCTTTTCCCA
AGATTCGTTCATGCATGTTCATATTGTCATTTCAGCGTAACAGCATTTGCCAACAAGCATCTTAATATAGTACACTTT--
-----------------------ATTTCATCAAGAGCTATGCACATGCAGAGCAAGTCACCAAACGCACAGCCCATCATC
CCCTGATCCCCTCTCCTCCTCCCG------------CCCTCTTTATATACCACACGCCAACACGAGAGGGGCCGAGGAAA
ACAGAAACCACGGTCGAGCTGAGGCTACTGTACTGCCTCTGCCTGCACCAACC---------------------------
-------------AAGAAAGCAAAAGCCCAATCAAGAAGGA---------GAAGAATGGGGGAGGCGCCGTGCAGCGTGG
TGGC---GCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCGCGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGGCTC
GGGAACGGCGGTGACGGTGCCGGCGCACGGGCTGGCGGGGTCCGCGGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCG
ATGGTTCCGCAGCGCCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGGCCCCCGGGGACGGCCGACGCCC
CGCCGTCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAG
TAGCC-AGCCTAGCTGGTGACGGTGCTGCCCTGTGACTGTGGTCATGAAGACAACAGCACTAATGTATATA-CACTACTC
ACTACTGCTCAATGGAGA-------AGTAGATTGATTATATGTAACGAATTTTTTAACCGCGACTCAAGCGATTTGTTGA
TGTCTGGAAATCTGAAGATTGCATTGCT-ACATTTCA--------------------------------TTCTTTTTAAG
ACCCTT-----TTTTTTGCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGGTACGACTGTGCTATAGCAATTCCAAATT
CCAATCATGTTGGGAGTACAAACCATGGTTTGCTTGTGACCTACTAGTGGACTTGAGCAGTACATTTG---------TAC
CGCGAAGCGATAATTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTCGAGAGTCTGCTCCATGCTCA
CCAATAATGCCG--------GAGAGTAGAAGCAATGAAGCAAAGCAAGGGTTGCCGAAATTCCGCGTTCGTAAACGGCAA
GCAAAGCTAGTCGGCAAAGTCGTTGCAGAAATCCCAAGTTCTGGTATACGGCACACCGGCCGATCCGCCATGGGCGCCGG
CCCCCGT--------------TCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCAGGCCAGTCTCTCGCAA
AAAAGAAAGAAAAGGAG--------GAGGATTGAAGTCGGGCCAGCCGAGGTGATGATGGAGTCGTAGCTGAACGAAGCC
GAGCCAACATTCGTTTCAAAAAAAAAAGCCGAGCCAACAGGAGATAGATAGACGAGTTACCGGGCGGAGCACGCATGCGG
CATGTTGCACTGTTGTCGCCATGAATGCGAGGATAGGGA------------------TAGGGAGAGGTGCCCTGCCCGCC
TTGCACTGCCATGTGCA--------CCGCCCTGCCCTGCTGCTTGCCGATGCTAATGCT---CGGCCGGGGTGGGCAGGG
CATGCTGCATGATGCGTCCTCGTCGACGCCAGCCAAGACCTACTACCCTCATCACGGGGCCG----TTGCATCCGCC
>chr2B_293
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------------------------------------------------------------------AAGAAAAGAAACTG
AGGTGTGGTCGTACAAAAGGAAAATAAAAGACTTAATGCATGCACATGGTCCGTTACTC-TTTTTTAAGCAGCTTTTCGT
TTCTTTCTTTTCTCCCTTGTTCCATTTCACCTACCGTGAGCAT--GCATATGGTCTGTCCTGACAAACGTGTTTGAACCA
CTACCAGTTGCCTGGACGTGTCAAGCGTACGGTGAGCAAGCATGAAGCATCTGATCGACAACTGAAAACAAATGTACTGC
TTTCTGGA---TATTAATGTTTTAGCTTCGAGCTTTACCTGAACTGTACGCTACACAAACAGTAC---AGTACTGCTTAA
TTGGGATAAGTGTGGCTTTTTAGTTTAAATACGTTTGGCTATTCCACACTCCATGCCATCCTCAAGCACTCTTAACTAAA
ATCTAACATATGAGACTAGAACAAATGCAATTAGGAAGCCAACTTTTGTAGGAGAATATGGTTCAGCTCTACGGCTCTAC
CAACAATTATGAGCTAGTACAAACTAGTGTAATACTTATCAATATAATCGGACAGGTGCGT---AATAAGAATTACCAAA
AAAAGCAAAGAGAGGCAGGTATGTATAAAGTCACCTTCCGGTGAAACTCAATGCAATTGTC----AGTAGCTCTTTCTAA
AGACACATCTGAACTGCCTCAATTCTAATCGAATTGATTATCAATATCCAAA-AGA-CCCACACGTATGCTCTTTTCCCA
AGATTCGTTCATGCATGTTCATATTGTCATTTCAGCGTAGCAGCATTTGCCAACCAGCATCTAGTCCAGTCCAAACATTT
TTAATTGTCTTTTTTATA-TTTCATTTCATCAAGAGCTATGCACATGCAGAGCAAACCACCAAACGCACAGCCCATCC--
-----------------CCTGACCCCCTCTCCTCCTCCCTCTTTATATACCACACGCGAACACGAGAGCGGTTGAGAAAA
CCAGAAAACCCAA-CGAGCTGAGCCTACTGTACTGCCTCTGCCTGCAGTCCTGCGCCAACCAAGAAAGCAAAGCCCCAGT
TCAAAAAAAGAAAAAGAAAGCAAA-GCCCAATCAAGCAGAAGGAGAAGAGGAAGAATGGGGGAGGCGCCGTGCAGCGTGG
TGGCCGCGCCGCGCCGTTCCCCGGCGCGCTTCCGCCTGCCACGCCACGGGCTGCGCCGCAAGGTCCACGTCGTCCGTCTC
GGGAACGGCGGTGCCGGCGCCGGCGCGCGGGCTGGCGGGGTCCGCCGCCTCTGCGGCCTCCGGCGTCGGATCAAGCTCCG
GTGGTTCCGGAGCACCATGTGGCGCCTGGCCGAGCTCTGCGTGGCGGTGCTGTCGGGCCCCCCGGGGACGGCCGACGCCC
CGTCGTCGTGGACCGGCGTGGAGCCGTGCTTCGCCGCGCCCTTCCTGCCGGCCGCGCTGGTGAGGCGCGCGGGGCAGGAG
TAGCT-AGCCTAGCTGGTGACGGTGCTACCCTGCGA------TCATGAAGACATCAGCACTAATGTATATACCACTACTC
ACTACTGCTCAATGGAGATTGCAGAAGTAGATTCATATGTAACGATT--TCTTTTAACCGCGGCTCAAGCGATTCGTTGA
TGTCTGAAAATCTGGAGATTGCATTGCTTACATTCCCCCTGCTCTTTCTCTGGATTTCCTTTAGGTCTCTTCTTTTTAAG
AT--TT-----TTTTCTTCTTCCAAAGCAGAGGCAAGTTTGGTGCTGTATGATAGTACTGTGCTATAGCAATTCCAA---
----TCATGTTGGGAGTACAAACCATAGTTTGCTTGTGATCTA---GTGGACTTGAGTAGTACTAGTATATTTGTACTAC
TGCGAAGCGATAAGTGATCCGTGATTCCGTGCCCGGCCGATATTCTCGGAGGATTATGTTGAGAGTTTGCTCCATGCTCA
CCAATAATGCCG--------GAGACTACAAGCAA--------AGCAAGGGTTGCCGAAATTCCGTGATCGTAAACTGCAA
GCAAAA-TAGTCGGCAAAGTTGTTGCAGAAATCCCATGTTCTGGTACACGGCACACCGACCGATCCGCCATCGGCGCCGG
CCTCCATTCTGCACAGTACAGTCTGTGCATGTGTGTTTGGCAGGCAGAGGCAGGAGTGATGTCACGCCCGTCTCTCGCAG
AAAAAAGG----------AAAAGGAAAGGATTGAAGTCGGGCAG-------------------------TGAACGAAGCC
GAGCCAACAGG----------------------------------AGATAGACGAGTTATCGGGTGGAGCACGCATGCGG
CATGTTGCATTGTTGTCGCCATGAATGCCAGGATAGGGATAGGGATTTCCTAGGGATTAGGGAGAGGTGCCCTGCCCGCC
TTGCACTGCCATGTGCAGTTGTGCACCGCCCTTCTCTGCTGCTTGCCAATGCTAATGCT---CGGCCGGGGTGGGCAGGG
CA---TGCATGATGCGTCCTCATCGACGCCAGCCAAAACCTACTACCCTCATCACGGGGCCGGCCGTTGCATCCGCC
>SNPs
----------------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------------SSS--S------S-S------S---S--------SS-S
S-SS---S---S-SS--------S---SS-SS---S---S-S--------------------------------------
----------S--SSSS---------------------------S-S--------------S-SSS------------S-
-------------------S---S----SSS-----------------S------S---S--------------------
----------S------------------------------------SS-------------------------------
-----S--------------------------------------------------------------------------
----SS-------------------------------------------------------S-S----------------
---------------------------------------------------------------------------SSSSS
S-SSSSSSS-------S-------------------------------------------S-------------------
-------------------------------S--S--------------S-------------------S----------
---S----------------------S-------------------S---------------SSS---------------
-----------------------------------------------SS-------S-----------------------
---------------------S---------------S------------------------------------------
------S--------S-SS----S--------------------------------------------------------
----------------------S---------------------------------------------------------
---S--------S------------------S------------------------------------------------
------------------------------------------S--S----------------------------------
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--------S-----------------------------------------------------------------------
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-----S--------------------------------------------------S-----------------S-----
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---------S------------------------------------------------------S---S---S-------
---S--SSSSS----------------------------S----------------------------------------
------------S---------------------------------------S---------------------------
------S------------S-----------------------------S-------------S----------------
-------SSSSSSSSSSSSS----------------------------S-------------------------------
-------------------------------------------S------------------------------------
-----------SS----------------------------------------------------------------S--
-----S--SS-S--SSSS---------------------------------S----------S--SS-S-----------
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---------------S----------------------------------------------------------------
----------------------------------------------------SSSSSSSSSS---S--S-----------
------------------------S--------------------------------S-------------------
>forward_376
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------------------------------------TGCATGCACATGATCCGTTG------------------------
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>reverse_2412
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-----------TGCAGTACAGTCTGTGCATGT------------------------------------------------
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