>input_sequence_73080
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-------------------------------------------------------ATGGAAGAAGGCATCAAAGAAGCAG
AGTCGAGCAAGAAAGCAGCAGCAGCAGCAGCCGAGGGCACCGGGACCAAAGTGGGCGTCATGGCCGACTCCACGTTAGGG
AGCATCGGCGACGTGCTCAAGCTGCTGCCGACGTCGACGGTGATCGTGTACGAGGTGCTCAACCCAATCGTGACTAACGC
CGGCGCGTGCAGCGTCGCCAACAGGGTGGTCACCGCGGTGCTCCTCGTGCTCTGCGCCTTCTCCTGCGCCTTCTCGGCCT
TCACCGACAGCTTCGTCGGTGCCGACGGCAAGGTCAGGTACGGCCTCGTGACGCCCAGGGGCCTCCTGCCGTTCGGCGGC
AGCGACGACGACGACACCGGGGTAAGAGACTTCTCCAAGTACAAGCTGCGCCCGGCTGACTTCGCGCACGCCTTCTTCTC
GGTGGTCGTGTTCGCGGCCGTGGCGCTGCTGGCCGACGCCAACACGGTGGCGTGCTTCTACCCGGCGCTCAGGGAGCAGC
AGAAGCAGGTGGTCATGGCACTGCCCGTCGTGGTCGGCGCCCTCGCGAGCGTCGTCTTCGTCGTGTTCCCCTCCAAGCGC
CACTCGATCGGGTACCCTCCGGCGAAGCCTGCCGCGAGCTCGCTGGCGTCGCAGTAG-----------------------
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>chr2B_1_TraesCS2B01G166900
CGCAGTTTACCAGCAACCTCAC-------AGTGGCAGGTCTCCCTTCGTTCGTCGAAAGCCGGACACCGAAGAGATCATT
GTCGCCGGGGGGCACGGTGCTTCAGTCCTCATTTCCAATGATGATCAGTCAGCTATAGATGCGTCATGGGCTCATGGCCT
CTGAAATCTCATAGTCACGCTACTTAACTGATACATGAGTTTGCCTAAAAAGAAACTTATACATGGGTCATAAGTCTCTG
AAGTTCCTTTGAAAATTGCCAAACCTTGCTTGCTGTTGCTGGTCACATATCCTTTCCAGGATCTTCACTCGCCACCCGTG
TCAGCAAAATCTCAAGCAACATACATGTAGCAATCTCTTGGTCTCGACCATGGAGGTCAACATCTGCAGATTTTCTAAGG
AAAGTGCAGCTTTCATAACGGAGAAGGCTTAATTTCAACCAG---TAGGCTAGTACGTGCCCACTTAGTAGAATACACTT
GCATCAGTTTCCTAACCTACGTGGACGTCCAATCTAGGGGCAGCATCACGATCACATTGTAGTCTTTCACCAGTACGAGA
CGATAGGCTAAGATGACCATTTCTTTCGTCCCTGCCTGCAAGAAACTCCCCAGACAATTAATCTGCACCGAGTGAGCTCA
CAACACGCGATATAAAAATGTGTGCAGGTTTATAGATTGGTGGCATGAACAAGCAATCCAACCTCATCAATCATGAAAAC
TCCCCATGAAACTATTCATTTTCGACGTATCGCTGTCAGGATCTTAGAAAAATTTCATATGTATGGACTTCGAGGCAGGA
ACTTG----TATCTTCTTGCAAATGTGGGCATCATGTACATCAATTTGGTCACTATCACATTACAATTTACAACCAAGAC
AAGGTACCACTATTTCTCCCA-AGTAAGCAACCGGATTAGCTTGCAAATTCCCATGGATTTCTTTAGGTCCAGATGGCCT
ATAAAATAGGTAAATTAGAGAAGGAGGGAGGGCAGGGGATAGCTTAAATCAGCTGATGGAAGAAGGCATCAAAGAAGCAG
AGTCGAGCAAGAAAGCAGCAGCAGCAGCAGCCGAGGGCACCGGGACCAAAGTGGGCGTCATGGCCGACTCCACGTTAGGG
AGCATCGGCGACGTGCTCAAGCTGCTGCCGACGTCGACGGTGATCGTGTACGAGGTGCTCAACCCAATCGTGACTAACGC
CGGCGCGTGCAGCGTCGCCAACAGGGTGGTCACCGCGGTGCTCCTCGTGCTCTGCGCCTTCTCCTGCGCCTTCTCGGCCT
TCACCGACAGCTTCGTCGGTGCCGACGGCAAGGTCAGGTACGGCCTCGTGACGCCCAGGGGCCTCCTGCCGTTCGGCGGC
AGCGACGACGACGACACCGGGGTAAGAGACTTCTCCAAGTACAAGCTGCGCCCGGCTGACTTCGCGCACGCCTTCTTCTC
GGTGGTCGTGTTCGCGGCCGTGGCGCTGCTGGCCGACGCCAACACGGTGGCGTGCTTCTACCCGGCGCTCAGGGAGCAGC
AGAAGCAGGTGGTCATGGCACTGCCCGTCGTGGTCGGCGCCCTCGCGAGCGTCGTCTTCGTCGTGTTCCCCTCCAAGCGC
CACTCGATCGGGTACCCTCCGGCGAAGCCTGCCGCGAGCTCGCTGGCGTCGCAGTAGCTAGTCCGGCCGGTGATCTCGAT
GTATGCGCTCTCCCGCCGTGTGCCACGTGTTTGTGTTTTGCGTGCGTACATA--TTTTTTTAGTCGAGTTTT--------
-------------------GTGTGCGTTTTTTGTTCAGATGTGCCGTTCTCAAGTGGT-----GTTTTTGGTTCGTCGCG
GGTCGCGGACAAGGCCCAAATGTAAAAAAAAAA--TCGATTTTCTTAACACAGTACAAAAGTAAGTTCAATTCTGTTCAT
TCGGAAAAAAAGTTCAATTCTGTTCCCTTTTCTTGGTTTTA-------TTTTTTCAAAAAGACAACCGAAGGGCA-CTTC
GGTATGATAAATTTTATTAAAGGAAAACAGTAGCCAGGAAAGATAAAAGGACACAAACGAT-------------------
-CAGCAAAAAATCATATTGATCAATGATCATCTTCTTCTTTTGATTGTACATCGTCCGTCGAAATTTGAAAATTGCAGTG
A----ACC----GTAAGGAAAAGCCCGCAAACTTCCTTAACATATTAAGCTTTGAAGACCGAAAAATGAAGAAAGAATCC
CATTGCTAGATTGGACTTATTTTAATATGAAATTCCATGTCATTTTCTTTCAAAATGAATAA----AATACAAGTGACTT
TAGATAATAATTCATGTGAGTAATGACAAGAACTCTTCTACTTCTTCGATATATTCCAATTTAAAGAAATGGAACAAGCC
ATTCATTGTTAGAAAATAAGATCTAAAAACCACCGAAGAAAAAACGGTTAGGGCATCACCCTATGTAGTTCATGCTTGCT
ATCTTTCAGTACTATCATAGAAGGTTGGAGAAATCGAACCATGCTGCATAACAAATCGAAAGAAGATGCTGAAATCATAG
CACCAAGAGCCAGACAACTCTTTCCCTTGATTTGACACACTAAATGTTTAAATCTAAAGAAAACTAGCAAATCGG---AC
ATCTACCCTCGTCAAGATACC--------------------------------GAGAGACCAAAGAGACCTTATTTCAGT
GTGTCATTGCTGCCACCATCAGGCCGATGCCGCAAGACGGCTAGAGAA
>chr2D_1
CGCAGTTTACCAGCAACCTGAGTCCCCAGAGCGGCAGGTCTCCCTTCATTCATCGAAAGCCGGACACTGAAGAGATCATT
GTCGCCGGGGGGCACGATGCTTTAGTCCTCATTTCCGAGGATGATCAGTCAGCTATAGCCGTG--------TCACGGCAT
CTGAAATCTCATAGTCACTCTACTTATCTG----------------------------ATACATGGGTCATAAGTCTCTG
AAGTTCCTTTGAACATTGCCAAACCTTGCTT------CCTGGTCACATATCCTTTCCAGGATCTTCACTCGCCACCCCTG
TCAGCAAAAACTCAAGCAACATACATGTAGCAATCTCTTGGTCTCAAACATGGAGGTCAACGTCTGCAGATTTTACAAGG
AAAGTGCAGCTTTCAGAACTGAGAATGACAAATTTCAATCATCATTAGGCTAGTACGTATCCACTTAGTAGAATACACTT
GCATCAGTTTCCTAACCTACGTGGACGTCCAATCTAGGGGCAGCGTCACGATCACCTTGTAGTCTTTCACCAGTACGAGA
CGATAGGCTAAGACGACCATTTCTTTCGTCCCTGCCTGCAAGAAACTCCCGAGACAATTAATCTGCAATAAGTGAGCTCA
CAACACGCGATATAAAAATGTGTGCAGGTTTATAGATTGGTGTCATGAACAAGCAATCCGACCTAATCAATCATGAAAAC
TCTTCGTGAAACTATCCCTTCGCGACGCATCGCTATCAGGATCTTAGAAAAATTTCGTACTTATGGACTTCGCGGCTGGA
GGAATTTAATATCATCTTGCAAATGTGGGCAGCATGTAATTCAATTTGATCACCATCACATTGCAATTTACAACCAAGAC
AAGCTACTACTATTTCTCCTAGAGTAAGCAACCGGATTAGCTTCCAAGCTCCCATGGATTTCTTTAGGCCCAGATGGCCT
ATAAAATAGGCAAATTAGAGAAGAAAGGAGGCCAGGGGCTAGCTTAAATCAGCTGATGGAAGAAGGCATCAAAGAAGCCG
AGTCGAGCAAGAAGGCAGCAGCAGT------CGAGAGCACAGCGACAAAAGTGGGCGCCATGGCCGACGCGACGTTCGGG
AGCATCGGCGACGTGCTCAAGCTGCTGCCGACGTCGACGGTGATCGTGTACGAGGTGCTCAACCCGATCGTGACCAACGC
CGGCGCGTGCAGCGTAGCCAACAGGGTGGTCACCGCGGTGCTCCTCGTGCTCTGCGCCTTCTCCTGCGCCTTCTCGGCCT
TCACCGACAGCTTCGTCGGCGCCGACGGCAAGGTCAGGTACGGCCTCGTGACGCCCAGGGGCCTCCTGCCATTCGGCGGC
GGCGACGACGACGACACCGGGGCGAGGGACTTCTCCAAGTACAGGCTGCGTCCGGCGGACTTCGCGCACGCCTTCTTCTC
GGTGGTCGTGTTCGCGGCGGTGGCGCTGCTGGCGGACGCCAACACGGTGGCGTGCTTCTACCCGGCGCTCAGGGAGCAGC
AGAAGCAGGTGGTCATGGCGCTGCCCGTCGTGGTCGGCGCCCTCGCGAGCGGCGTCTTCGTCGTGTTCCCCTCCAAGCGC
CACTCGATCGGGTACCCTCCGGCGAAGCCTGCTGCGAGCTCGCTGGCGTCGCAGTAGCTAGTCCGGCCGGTGATCTTGAT
GTATGCGCTCTCCCGCCGTGTGCTATGTGTTTGTGTTTTGCGTGCGTTCATGTTTTTGTTTTTTTAGGTTTTTTTAGACA
ACTTTTGTTTTTTCTTTAGGTGTGCGTTC---------ATGTGCCGTTCGCATGTGGCCTTGGGCTTTTGGTTCGTCGCA
GGTCGCGGACAAGGCCCAAATGTAAAAAAGTAATTTCGATTTAAATATTCTTTTTGTCTCAAAAAAAATTA---------
---------------------------------------AAATATTCTTTTTTCCAAAAGGACAGCTAAAGGGCATTTTA
CGTAAGATAATAATTA-TAAAGGAAAACAACAACCAAGAAACACAATATGATGCAAAACGAGTATTCTAGGAAAAAAATT
ACATC-AAAAATAATATTGAC-------CATCTTCTTCTTTCACTTGCACGTCATCCATCGAAACTTGAAAATTGAAGTG
A----GCCAATAGTAACGAAAAACCTGCAAACGCCCTCAACGTAGTAGGCTTTAAAGACCACAATGA-------------
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------------------------------------------------------------------------------TC
ATTCATCGTTAGAAACG-AGATCTAAAAATTGTTGAA----------TTAGGGCATCACCCTGTTTAGTACATGATTTTT
GTTTTTCACTACCATTATAGAGGGTGGGAGAAACTAAACCATGCCGCATAACAATAT-------GACGCTGAAATCCTCC
CACCCAGAGCCAGTCAGCTAATTTCCTTGATTTGACACACCAACTGTTTAAATCTAAAGAAAGCCAGCAAATCTGGCAAC
ATCTACCCTCGCAGACCCTTCGTTGGAGTTGGATCAAATGACGTCAAGATAGTGAGAGGCCAAAGAGACCTTATTTCAGT
GTGTCATTGTTGCCACCATCTTGTCGATGCTGCAAGACGGCTAGAGAA
>chr2A_212
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----------------------------------------------------------ATACATGGGTCATAAGTCTCTG
AAGTTCCTTTGAACATTGCCAAACCTTGCTT------GCTGGTCACATATCCTTTCCAGGATCTTCACTCGCCACCCCTG
TCAGCAAAAACTCAAGCAACATACATGTAGCAATCTCTTGGTCTCGACCATGGAGGTCAACGTCTGCAGATTTTCTAAGG
AAAGTGCAGCTTTCATAACTGAGAAGGCTTAATTTCAACCAG---TAGGCTAGTACGTATCCACTGAGTAGAATACACTT
GCAT-----------CCTACGTGGACGTCCAATCTAGGGGCAGCGTCACGATCGCATTGTAGTCTCTCACCAGTACGAGA
CGATAGGCTAAGATGACCATTTCTTTCGTCCCTGCCTGCAAGAAACTCCCGAGACAATTAATCTGCAACGAGTGAGCTCA
CAACACGCGATATAAAAATGTGTGCAGGTTTATAGATTGGTGTCATGAACAAGCAATCCGACCTAATCAATCATGAAAAC
TCTTCATGAAACTATCCCTTCGCGACGCATCGCTGTCAGGTTCTTAGAAAAATTTCGTACATATGGACTTCGCGGCTGGA
GGAATTTAATATCATCCTGCAAATGTGGGCAACATGTACGTCAATTTGGTTACTATCACATTGCAATTTACAACCAAGAC
AAGCTACCACTATTTCTACCGGAGTAAGCAACCGGATTAGTTTCCAAGCTCCCATGGATTTCTTTAGGCCCAGATGGCCT
ATAAAATAGGTAAATTAGAGAAGGAAGGAGGGCAGGGGATAGCTTAAATCAGCTGATGGAAGAAGGCATCAAAGAAGCCG
AGTCGAGCAAGAAAGCAGCAGCAGC------CGAGAGCACAGCGACCAAAGTGGGCGTCATGGCCGACTCGACGTTCGGG
AGCATCGGCGACGTGCTCAAACTGCTGCCGACGTCGACGGTGATCGTGTACGAGGTGCTCAACCCGATCGTGACCAACGC
CGGCGCGTGCAGCGTGGCCAACAGGGTGGTCACCGCGGCGCTCCTCGTGCTCTGCGCCTTCTCGTGCGCCTTCTCGGCCT
TCACTGACAGCTTCGTCGGCGCCGACGGCAAGGTCAGGTACGGCCTCGTGACGCCCAGGGGCCTCCTGCCGTTCGGCGGC
GGCGACGACGACGACGCCGGGGCGAGGGACTTCTTCAAGTACAGGCTGCGCCCGGCGGACTTCGCGCACGCCTTCTTCTC
GGTGGTCGTGTTCGCGGCCGTGGCGCTGCTGGCCGACGCCAACACGGTGGCGTGCTTCTACCCGGCGCTCAGGGAGCAGC
AGAAGCAGGTGGTCATGGCGCTCCCCGTCGTGGTCGGCGCCCTCGCGAGCGGCGTCTTCGTCGTCTTCCCCTCCAAGCGC
CACTCGATCGGGTACCCTCCGGCGAAGCCTGCCGCGAGCTCGCTGGCGTCGCAGTAGCTAGTCCGGCCGGTGATCTCGAT
GTATGCGCTCTCCCGCCGTGTGCTATGTGTTTGCGTTTCGCGGGCGTACATATTTTTTTTTAGTCGAGTTTT--------
-------------------CTGTGCGTAC---------ATGTGCCGTTCGCATGTGGT-----GCTTTTGGTTCGTCGCG
GGTCGCGGACAAGGCCCAAATGTAAAAAAGTAAGTTCGATTTTTTTAACACAGTACAAAAGTAAGTTCAATTCTGTA---
------------------------CCCTTTTCTTGGTATAAATATTCCTTTTTTCAAAAAGACAACCGAAGGGCTTCTTC
AGTATGATAAATTTTATTATAGGAAAACAGTAACCAGGAAAGACAACAGGACACAAAACGA------TAAGCAAAAAAAT
ACATCAAAAAATCATATTGAT-------AATATTTTTCTTTTGATTGTACGTCGTACGCCGAAGCTTGAAAATTGCAATG
AGCCGACC----ATAAGGAAAAGCCCGCAAACTTCCTTGACATATTAAGCTTTGAAGACCGAAAAATGAAGAAAGAATCC
CATTGCTAGAATGGGCTTATTTTAATATGAAATTACATGTCATTTCCTTTCAAAATGGATAAAATGAATACAAGTGAATT
CAGATGATAATTCATGTTAGTGATGAAAAGAACTCTTCTACTTCTTCGATATATTGCAATTTAAAGAAATGGAAAAAGTC
ATTCATCGTTAGAAAATAAGATCTAAAAACCACC---GAAAAAACGGTTAGGGCATCACCCCATGCAGTTCATGCTTGCT
ATCTTGCAGTACTATCATAGAAGGTTGGAGAAATCGAACCATGCCGCATAACAAATCGAAAGAAGATGCTGAAATCATAG
CACCAAGAGCCAGACAACTCTTCCCCTTGATTTGACACACTAAATGTTTAAATCCGAAGAAAACTAACAAATCTG---AC
ATCTACCCTCGTCAAGATACC--------------------------------GAGAGACCAAAGAGACCTTATTTCAGT
GTGTCATTGCTGCCACCATCTCGTCGATGACGCAAGACGGCTAGAGAA
>SNPs
-------------------S-S---------S---------------S---S---------------S------------
----------------S-----S-------------S-S-------------------SS-S-SSSSSSSS---S---S-
------------------S-------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
-------------S-----------------SSSSSS----------------------------------------S--
---------S---------------------------------------------------S------------------
-------------------S--------------------------------------SS--------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------S----------------S------------
------------------------------------------S----------------S----S---------------
--SS-----------S-S--SS-----S----------------------------S--SS-----------S---S---
SSSSS--------S-----------------S-------S----------------------S-----------------
---S---------------------------------------S---SS-------------------S-----------
-------------------------S----------------------------------------------------S-
-------------------------SSSSSS----S----S-S---------------------------S-----S---
-----------------------------------------------------------------S--------S-----
---------------S----------------------------------------------------------------
-------------------S------------------------------------------------------------
S---------------------SS--S----------------S------------S-----------------------
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-------------------S-------------------------------S----------------------------
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-----------------------S-S------------------------------------------------------
----------------------------SSSSSSSSSS-----------S--S-----------S---------------
-----------------------------SS------------S--------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------S-S----------------------------------------
S-------------------------------S----------S--S----------SSSS-------------------
---S-----------------SSSSSSS----------------------S-------------S---------------
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----------S---S-------------------S----------S-----------S-------------------S--
S----S-----------S---S----S----------------------------S------------------S---S-
------S-------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------------------------------------S------
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--------------------SS-S------------------------
>forward_277
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-----------------GCCAAACCTTGCTTGCTGTT-------------------------------------------
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>reverse_1706
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-------------------------CGTGTTTGTGTTTTGCGTGC-----------------------------------
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