>input_sequence_73072
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---------------ATGGAGCAGCAGCCTGTGGCGGCGGCAGCGGCAGCGGAGCCGGAGGTACCGGCGGGGCTTGGGCT
GACGGCCGCGGAGTACGCGCAGCTGCTGCCCACGGTGGAGGCGTACCACCGGTACGCCGTGGGGCCAGGCCAATGCTCCT
CCCTCGTCGCGCAGCGTATCGAGGCGCCGCCAGCAGCCGTCTGGGCCATCGTCCGCCGCTTCGACTGCCCCCAGGTGTAC
AAACACTTCATCCGCAGCTGCGCGCTCCGCCCGGACCCCGAGGCCGGCGACGAGCTCCGCCCGGGCCGCCTCCGCGAGGT
CAGCGTCATCTCCGGCCTCCCCGCCAGCACCAGCACCGAGCGCCTCGACCTCCTCGACGACGCGCGCAGGGCCTTCGGCT
TCACCATCACCGGCGGCGAGCACCGCCTCCGCAACTACCGGTCCGTCACCACCGTCTCCGAACTCTCCCCGGCCGCGCCC
GCTGAGATCTGCACCGTCGTCCTCGAGTCATACGTCGTCGACGTCCCCGACGGCAACAGCGAGGAGGACACGCGCCTCTT
CGCGGACACTGTCGTCAGGCTCAACCTCCAGAAGCTCAAGTCCGTGGCCGAGGCCAACGCCGC---CGCCGCGGCCACGA
CCGCGCCGCCGGCAGAATAA------------------------------------------------------------
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>chr1B_1_TraesCS1B01G206600
GCATCCAGCCACCGGCCCCGTCGCCTTTCTTCATGGATTGGATGGGTATCGAACCGCATAGCCTATGCAACGACTTCGCG
CCGCATATCGATATCTCCTCCTTCTCTAATTGCTTGGATCTCACTCGTCGACTGGCCACCATCACAGCCACGCCCGACGG
CCGTCGGACGGGCTTGGCACTAGCCCAGCAGCTACGTCAGCTCCTCGCTGTCGGTCATCAAGTGTGACCACTGCCCACGG
CTAGTGTTGCACCAAGTTTCGAGCACGCAGAAGCATCCAGCATGGGTGTTCTTCAGGAGTGAAAAAGGATGGGGTGAGTT
CTTGTTGCTACGGTTTGCTCAAAAAATTTATGTGATGGGATTTCTATTAAAGTGCATAATTGTGGTTCTAGTTTTTTT-A
TCGGTTCTCTTGGCGAAGAATTGGTGAATCATGTACTACTATGTTTTAAGATGGCGTTTAGTAAAATAAAAAAGTAGTGA
AG-TTATTTCGGTGGCCAGAAATGAAATGAATTTGATAAAATAAATTACTCCACTAAATTTAGGAGATCAGTTATGTACA
ATCAAAATTTAGTGGAGTAAAAATAGTCCATTAATCTTTTAGGAGATG----CTCTTCTATTTTTTATTTTTTAGGAGAT
GCTCTTAGTTTAGAAAAAGATTTCTGCTAAAAAAACA-----------------------------CATCAAAGTGTTGT
TCCTGTAGTTTTAAGCAAAGACAGTTAAGTAAATCCGAAGAGAGAATATGC--------------------ATAAAAAAA
CATTTTTTGATTCCCTAGAGTGAAAAGGGGTCGTAGACCAAGAGAGAGAGAGAGAGTAGAGAGAGAAAGTCCTGGTCCCA
ATTCCCCATCTCGCTTCAGCGTCTACTGCTAGATAGAGTAGTATTAAATGTACTAGCAGGCAGCTCACTCCCGCAAGGCT
CCCCTTCATCTCTCCCTGCTCCAAGCCTCTCTCTCGCACGCATCCCATCCCACCCCACCCCACCCCACCCGACCGCGTTG
AGTCGAGTCCAATCGATGGAGCAGCAGCCTGTGGCGGCGGCAGCGGCAGCGGAGCCGGAGGTACCGGCGGGGCTTGGGCT
GACGGCCGCGGAGTACGCGCAGCTGCTGCCCACGGTGGAGGCGTACCACCGGTACGCCGTGGGGCCAGGCCAATGCTCCT
CCCTCGTCGCGCAGCGTATCGAGGCGCCGCCAGCAGCCGTCTGGGCCATCGTCCGCCGCTTCGACTGCCCCCAGGTGTAC
AAACACTTCATCCGCAGCTGCGCGCTCCGCCCGGACCCCGAGGCCGGCGACGAGCTCCGCCCGGGCCGCCTCCGCGAGGT
CAGCGTCATCTCCGGCCTCCCCGCCAGCACCAGCACCGAGCGCCTCGACCTCCTCGACGACGCGCGCAGGGCCTTCGGCT
TCACCATCACCGGCGGCGAGCACCGCCTCCGCAACTACCGGTCCGTCACCACCGTCTCCGAACTCTCCCCGGCCGCGCCC
GCTGAGATCTGCACCGTCGTCCTCGAGTCATACGTCGTCGACGTCCCCGACGGCAACAGCGAGGAGGACACGCGCCTCTT
CGCGGACACTGTCGTCAGGCTCAACCTCCAGAAGCTCAAGTCCGTGGCCGAGGCCAACGCCGC---CGCCGCGGCCACGA
CCGCGCCGCCGGCAGAATAACGGCGGCCGGATGCTGTGATACGCTTTGCTTTTTCTCGGGAGGGGGTTGCTTCGAATTGA
CGCATGCAGGGGCTTCGAATAGGTGTGATTCCTGAGGTGCTGCCTGTAATAAAACTCTTTCCATGGACTCCTCCATCCCC
TTTCTTTTCCTTTCCTTTGGAATTCTTTCACCTTTCTGTCGTGCTTGCAATTGGAATTCAACTTTGCATGTCCGTGATTC
ATAGCTCGCTACTGCTAGATGATCAAGCCAGCTTATCACTTATAGCAGTACTACTCAATGTTCATTAGCTTGATTCATAC
TCTAGCCCTTGTTGATCAATGATGATGATGAT------GAATTAGCACTTGTTGATCAATAATGATGATGAAGAAGAATT
AGTACTACCTGCTGATCGATGATGATGATAATAATGTTAAATGG----------------AAACGAAAAGAAACTAGGAG
TGCTCTAAACTGTAGAGGCTGGAACGATGTTACTGTGATTGATTGTCTTGAGATGCTTGTTTAGTGGGTGTGGTTTTTGT
CTCTTTCTTGTCATGTTTTTCTGTTGCGTGTGCTCCGGGATGCATGCATCATTGTTTCTGTTTGGAACCGGCATGAAAAC
ACAGCGGCGATCGACACTTGTTGCTTCTCTAGTTCCCTGGAGTAGAAAACAACACTTCCATTTTCCCAGGCCACACTACA
AAA-TTTGGTGAATTTATGTCCAGTTTGTGCATATCTGAATATGTTATCAGCGACTGTAGCAGTCATGTCATGTGATCCA
TTTGTGTTAGCCCAGCCTTCCAGAAGCCATCCATATCATGTGATGAATGCTATTGCCAAGCAAGTTTTTACTC--ATATT
TTTCATGATCAAATCCATTGCTACTGCTATGCTGGTGCTTAAAGATTCAGACATGGAAGGAAAAAGCCAGT--------A
CAGTAGCAGCAAGAATGCAAGATGCTCAAGAGTCCCAGCGAGCATCTTCTTTTCTTTTCTTTTTTTCTTTTCAATCAATC
TGTCCGCCTCCTC
>chr1D_1
GCATCCATCCACCAGCCCCGACGCCTTTTTTCATGGATTGGACAGGTATCGAACCGCATAGCCTATGCAACGA----GCG
CCGCATATCGGTATGGCCTCCTTCTCTAATGCTC-GGGTCTCACTCGTCGACTGGCCACCGTCACAGCCATGCCCAGCGA
CCGTTGAACGGGCTTGGCACTAGCTGAGCAGCT-CGCCGGCTCCCCGCTGCCGGTTATCAAGTGTGACCACTACCCACGG
CTAGTGTTGCGCCAAGTTTCGAGCACGCTGAAGCATCTAGCGTGGGTGTTCTTCAAGAGTGAAA-AGGATGGGGTGAGTA
CTTGTTGCCACGGTTTGCTCAAAAAGTATGTAGGATGAGATTTCCATTGAAGTATATAATTGTGGTTCTAGTTTTTCG-A
TTGGTTCTCTTAGCGAAGAATTGGTGAATTATGTTCTGTGGTGTTTCAAGATGACGTTCAATAAAATAAAAAAATAGTGA
AGTTTATTTCGGTGGCCAAAAATGAAC-GAATTTGATAAAATAAATTACTCCACTAAATTTAGAAGATCAATTAGGTCCG
ATCAAAATTTAATGGAGTAAAAATAGTCCATTAATCTTTACTCGGCGGTTTACTCGTCTATTTTTCAG------GGAGAT
GCTCTTAGTTTAGAAAAAGAGTTCTGCTAAAAAAACCA-----------------------------ATCAAAGTGTTGT
TCCTCTAGTTTTAAGCAAAGACACTTG-GTAAATCCGAAGAGAGAATATGCATATACCACAAGCACACACAATTAAAAAA
CA-TTTTTGATTCCCTAGAGTG--AAGGGGTCGTAGACCAAGAGAGAGAGAGAG--TAGAGAGAGAAAGCCCTGGTCCCA
ATTCCCCATCTCGCTTCAGCGTCTACTGCTAGATGGAGTAGTATTAAATGTACTAGCAGGCAGCTCACTCCCGCAAGGCT
CCCCTTCATCTCACCCTGCTCCAAGCCTCTCTGTCGCACGCAT----------CCCACCCCACCCCACCCGACCGCGTCG
AGTCGAGTCCAATCGATGGAGCAGCAGCCTGTGGCGGCG---GCGGCGACGGAGCCGGAGGTACCGGCGGGGCTTGGGCT
GACGGCCGCGGAGTACGCGCAGCTGCTGCCCACGGTGGAGGCGTACCACCGGTACGCCGTGGGGCCAGGCCAATGCTCCT
CTCTCGTGGCGCAGCGTATCGAGGCGCCGCCAGCCGCCGTCTGGGCCATCGTCCGCCGCTTCGACTGCCCCCAGGTGTAC
AAGCACTTCATCCGCAGCTGCGCGCTCCGCCCAGACCCCGAGGCCGGCGACGAGCTCCGCCCGGGCCGCCTCCGCGAGGT
CAGCGTCATCTCCGGCCTCCCCGCCAGCACCAGCACCGAGCGCCTCGACCTCCTCGATGACGCGCGCAGGGCCTTCGGCT
TCACCATCACCGGCGGCGAGCACCGCCTCCGCAACTACCGGTCCGTCACCACCGTCTCCGAGCTCTCCCCGGCCGCGCCC
GCCGAGATCTGCACCGTCGTCCTCGAGTCCTACGTCGTCGACGTCCCCGACGGCAACAGCGAGGAGGACACGCGCCTCTT
CGCGGACACCGTCGTCAGGCTCAACCTCCAGAAGCTCAAGTCCGTCGCCGAGGCCAACGCCGCTGCCGCCGCGGCCACGC
CCGCGCCGCCGGCAGAATAACGGCGGCCGGATGCTGTGATACTCTTTGCTTTTTCTCGGGAGGGGGTTGCTTCGAATTGA
CGCATGCAGGGGTTTCGAATAGGTGTGATTCCTGAGGTGCTGCCTGTAATAAAACTCTTTCCATGGACTCCTCCATCCCC
TTTCTTTTCCTTTCCTTTGGAATTCTTTCACCTTTCTGTCGTGCTTGCAATTGGAATTCAACTTTGCATGTCCGTGATTC
ATAGCTCGCTACTACTAGATGATCAAG-CAGCTTATTACTTATAGCAGTACTACTCAATGTTCATTAGCTTGATTCATAC
TCTAGCCCTTGTTGATCAATAATGATGATGAT----------------------------------------GAAGAATT
AG---TACCTGCTGATCGATGATGATGATAATAATGTTAAATGGCTGCATGATTTAGTGGAAACGAAACGAAACTACGAG
TGCTCTAAACTGTAGAGGCTGAGACGATATTACTGTGAATGATTGTCTTGAGATGCTTGTTTAGTGGGTGTAGTTTTTGT
CTCTTTCTTGTCATGTTTTTCTGTTGCCTGTGCTCCGGGATGCATGCATCATTGTTTCTGTTTGGAACCGGCATGAAAAC
ACAGTGGCGATCGACACTTGTTGCTTCTCCGGTTCCCTGGAGTAGAAAACAACACTTCCATTTTCCCAGGTCACACTGCA
AAA-TTTGGTGAATTTATCTCCAGCTTGTGTATATCTGAATATGTTATGAGCGACTGTAGCAGTCATGTCATGTGATCCA
TTTGTGTTAGCCGAGCCTTCCAGAAGCCATCCATATCATGTGATGAATGCTATTGCCAAGCAAGTTTTTACTCATATATT
TTTTACGATCA-ATCCATTGCTATTGTTATGTTGGTGCTTAAAGATTCAGACATGGAAGAAGAAAGCCAGT--------A
CAGTAGCAGCAAGAATGCAAGATGCTCATGAGACCCAGCGAGCATCTTCTTTTC------TTTTTTCTTTTCAATCAATC
TGTC---------
>chr1A_2
CAG-CCAGCCACCGGCCTCGTCGCCTTTTTTCATGGATTGGACGGGTATCAAACCGCATAGCCTATGCACCGACTCTGCT
CTGCATATCGGTATGGCCTCCTTCTCTAGTCGCTTGGATCTCACTCGTCGACTGACCACCGTCATAGCCACGCCCGGCGG
GCGTTGGATGGGCTTGGCACTAGCCCAGCAGCTACGTCAGCTCCTCGCTGTCGGTCCTCAGGTGTGACCACTGCCCACGG
CTAATGTTGCGCCAAGTTTCGAGCACGCAAAATCATCCAGCGTGGGTGTTCTTCAAGAGTGAAA-AGGATGGG-TGAGTT
CTTGTTGCTACGGTTTGCTCAAAAAAATTATATGATGGGATTTCTATT--AGTGTATAATTGTGGTTCTAGTTTTTTTTA
TCGGTTCTCTTGGCGAAGATTTGATGAATCATGTACTACGGTGTTTTAAGATGACGCTCAGTAAAATAAAAAAGTAGTGA
AG-TTATTTCGGTGGCCGAAAATAAAATGGATTTGATAAAATAAAGTACTCCAATAAATTTAGAAGATCAGTTAGGTCCG
ATCAAAATTTAGTGAAGTAAAAATAGTCCCCTAATCTTTACTCGGCGGTTTACTCCTGCATTTTTTAG------GGAGAT
GCTCTTAGTTTAGAAAAGGATTTCCGCTAAAAAAATCCATCAAAGTGTTTTTTTTTAGAGAAAATCCATCAAAGTGTTGA
TCCTCTAGTTTTAAGCAAAGACACTTG-GTAAATCCGAAGAGAGAATATGCATATACCACAAGCACACACAATAAAAAAA
CATTTTTTGATTCCCTAGAGTGAAGA--GGTCGTAGACCAAGAGAGAGAGAGAG--TAGAGAGAGAAAGCCCTGGTCCCA
ATTCCCCATCTCGCTTCAGCGTCTACTGCTAGATAGAGTAGTATTAAATGTACTAGCAGGCAGCTCACTCCCGCAAGGCT
CCCCTTCATCTCACCCTGCTCCAAGCCTCTCTCTCGCACGCAT----------CCCACCCCACCCCACCCGACCGCGTCG
AGTCGAGTCCAATCGATGGAGCAGCAGCCTGTGGCGGCA---GCGG------AGCCGGAGGTACCGGCGGGGCTTGGGCT
GACGGCCGCGGAGTACGCGCAGCTGCTGCCCACGGTGGAGGCGTACCACCGGTACGCCGTGGGGCCAGGCCAATGCTCCT
CGCTCGTGGCGCAGCGTATCGAGGCGCCGCCAGCCGCCGTCTGGGCCATCGTCCGCCGCTTTGACTGCCCCCAGGTGTAC
AAGCACTTCATCCGCAGCTGCGCGCTCCGCCCGGACCCCGAGGCCGGCGACGAGCTCCGCCCGGGCCGCCTCCGCGAGGT
CAGCGTCATCTCCGGCCTCCCCGCCAGCACCAGCACCGAGCGCCTCGACCTCCTGGACGACGCGCGCAGGGCCTTCGGCT
TCACCATCACCGGCGGCGAGCACCGCCTCCGCAACTACCGGTCCGTCACCACCGTCTCCGAGCTCTCCCCGGCCGCGCCC
GCCGAGATCTGCACCGTCGTTCTTGAGTCCTACGTCGTCGACGTCCCCGACGGCAACAGCGAGGAGGACACGCGCCTCTT
CGCGGACACCGTCGTCAGGCTCAACCTCCAGAAGCTCAAGTCCGTCGCCGAGGCCAACGCCGCCGCCGCCGCGGCCACGC
CCGCGCCGCCGGCAGAATAACGGCGGCCGGATGCTGTGATACTCTTTGCTTTTTCTCGGGAGGGGGTTGCTTCGAATTGA
CGCATGCAGGGGCTTCGAATAGGTGTGATTCCTGAGGTGCTGCCTGTAATAAAACTCTTTCCATGGACTCCTCCATCCCC
TTTCTTTTCCTTTCCTTTGGAATTCTTTCACCTTTCTGTCGTGCTTGCAATTGGAATTCAACTTTGCATGTCCGTGATTC
ATAGCTCGCTACTGCTAGATGATCAAGCCAGCTTATCACTTATAGCAGTACTACTCAATGTTCATTAGCTTGATTCATAC
TCTAGCCCTTGTTGCTAAATGATGATGAGGATGATGATGAATTAGCACTTGTTGATCGATAATGATGATGAAGAAGAATT
AG---TACCTGCTGATCGATGATGATGATAATAATGTTAAATGGCTGCATGATTTAGTGGAAACGAAAAGAAACTAGGAG
------------------------CGATGTTACTGTGATTGATTGTCTTGAGATGCTTGTTTAGTGGGTGTAGTTTTTGT
CTCTTTCTTGTCATGTTTTTCTGTTGCGTGTGCTCCGGGATGCACGCATCATTGTTTCTGTTTGGAACCGGCATGAAAAC
ACAGTGGCGATCGACACTTGTTGCTTCTCTAGTTCCCTGGAGTAGAAAACAACACTTCCATTT-CCCAGGCCACACTGCA
AATTTTTGGTGAATTTATGTCCAACTTGTGCATATCTGAATATGTTATCAGCGACTGTAGCAGTCATGTCATGTGATCCA
TTTGTGTTAGCCGAGCCTTCCAGAAGCCATCCATATCATGTGATGAATACTATTGCCAAGCAAGTTTTACCTC--ATATT
TTTCATGATCA-ATCCATTGCTATTGCTATGTTGGTGCTTAAAGATTCAGACATGAATGAAGAAAGCCAGCACAGTAGCA
CAGTAGCAGCAAGAATGCAAGATGCTCATGAGACCCAGCGAGCATCTTCTTTTC------TTTTTTCTTTTCAATCAATC
TGTC---------
>SNPs
----------------------------S-------------S--------------------------------SS---
----------S---SS--------------S-----------------------------S---------------S---
----S---------------------------------------------------------------------------
----------S------------------------------S-------------S--------S---------------
-------------------------------S----------------S-----S-------------------------
---------------------------------------SS------------S----S---------------------
------------------S--------------------------------------------S----------S--S-S
---------------------------------------SSSSS-SS--------S-----------SSSSSSS------
------------------------------------S-------------------------------------------
----S------------------S--SS----------------------------------------------------
------------------------------------------------------SS-------------S----------
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------------S------------------------------SSSSSSSSSS-------------------------S-
---------------------------------------SSS-----SS-------------------------------
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-S-----S--------------------------S---------------------------------------------
--S-----------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
--S--------------------------S--------------------------------------------------
---------S-----------------------------------S---------------------------------S
------------------------------------------S-------------------------------------
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---------------------------------------------------------S----------------------
--SSS---------------------------------------------------------------------------
---------------------SS------------------------------------------------S--------
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----S------------------------------------------------------------------------S--
------------------------S-------------------------------------------------------
------------S-------------------------------------------------------------------
-----------S-----------S-------S---------------------------S-S------------------
----------------------------S---S---------------------SSSSSS--------------------
----SSSSSSSSS
>forward_95
---------------------------------------------------------------------------TCGCG
CCGCATATCGATATC-----------------------------------------------------------------
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>reverse_1723
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------------------------------------------GCTTTGCTTTTTCTCGGGAGG-----------------
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