>input_sequence_73068
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-------------------------------------------------------------------------------A
TGTCGTGGCAGACGTACGTCGACGAGCACCTGATGTGCGACATCGAGGGCCACCACCTCGCCTCCGCGGCCATCCTCGGC
CACGACGGCACCGTCTGGGCCCAGAGCGCCGACTTCCCCCAGGTCACCGCCGGCATGCCGGCCGCCTTCCTTCAGATTTC
CTGTATGATCTCTCC-CGTAGATGCGTTTTCCCCATATCTCACGGTGCTGGTTGGTTTTGGTTCTTGTGTGGCGTCCAGT
TCGCGCCCGCCGAGATCACTGCCATCATGAAGGACTTCGACGAGCCGGGGCACCTCGCCCCCACCGGCATGTTCGTTGCA
GGTGCCAAGTACATGGTTATCCAGGGCGAACCTGGCGCTGTCATCCGTGGCAAGAAGGTATACATGCATGCATGCATGCA
TCTCTCGGC---TTT-CCAAAATTATACTACCACTATTACGTGTTTTTGGAAAATTGATTGATCGTTCCCTGTGCTTCGT
CATGTTAATTTGCGCTTCATCCGACCTGCAGGGAGCAGGAGGCATCACCATCAAGAAGACCGGGCAGGCGCTGGTGGTCG
GCGCCTACGAGGAGCCCATGACCCCTGGGCAGTGCAACATGGTGGTGGAGAGGCTCGGCGACTACCTTGTCGAACAAGGC
ATGTAG--------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G343400
AATGTTCATGGTAAAAAACGACTCCACAAGTTTGCTTCCTTCACAATTTGGATCTCAGGAATTAAACCTTATTTTGAACT
GTGTTCAGTCCTAAATAGTAGGTGCCCCTAGTGTAACGCTAGTTGTTTCTTGTTTTAATGGGATGAGATTTGTGAGTTTG
AGTTTGTATATAGCAATTGTGTGTGTGCGCGCGTGCGTGAATTGAAGACATGTCTTAAATCCACATTGGATTCTTATGGT
TTTGTCTTGTAATTCTTTCTA-GTTTGTAAGTTTGGATTACATTATATGCCAAGCTAGTCGTCTGTCTTTTTTTTTTAAG
TTGTTATCTGTCATGATTTATCAAAGTGTTTTTCTACA---------TAAGTTGTTTGGAACCATGAAAAATCACTGAAA
CAACGGCCGATCCTAGAATTGACATCTATGTTCGTATTTTGCTGAATTTAT-TCAGGCTTTCCCTGGATGTCCGTTCAGT
GGGAGAGACGTTCTTGTTGATTACGAAGCGCCCGCGAAGACTTCATCAATCTCAAGATATTGTACGGGCTCAAGATCTCA
CAGGTGCTAATAAAGG-TT---GAGTGTTCGTGGGTGAATGCGTTTATGGAGGTGAGG--------GCATCCACGTTCGG
AAAAACAAACAGCGGCCCGCGTCAAATTTGCAACTAAGCTCTATGCCGGTTTACATCGTCTCAAAATGGAGTGGCGAGGT
CCGAATATTCGAGCAAAACCGATGCCCATGGATCGACGGGCCCTGACCGATGAGCCAAGCCA----------GGGCAGGT
CCGCAAGCAAAGCATCCCCTGGAAAGACGGCGAGGGGCAAGGGCGCCGAGGGGCCAACGGGTGGCTGGGACGACGCGGGG
ATCCGCTCTTCCGCCCCCCGCCCTCCTCTATTTATGGCCTCCACCGCCCAATCCACGCACCAGA-CCAACGAACTCCGAT
CGCCACTCCCCCAGAGAAAT---CCTCCCTCCTCACCTCGAACGCTCCGGGAAGCAGCAAACGCGA--GGCCGGCCAAGA
TGTCGTGGCAGACGTACGTCGACGAGCACCTGATGTGCGACATCGAGGGCCACCACCTCGCCTCCGCGGCCATCCTCGGC
CACGACGGCACCGTCTGGGCCCAGAGCGCCGACTTCCCCCAGGTCACCGCCGGCATGCCGGCCGCCTTCCTTCAGATTTC
CTGTATGATCTCTCC-CGTAGATGCGTTTTCCCCATATCTCACGGTGCTGGTTGGTTTTGGTTCTTGTGTGGCGTCCAGT
TCGCGCCCGCCGAGATCACTGCCATCATGAAGGACTTCGACGAGCCGGGGCACCTCGCCCCCACCGGCATGTTCGTTGCA
GGTGCCAAGTACATGGTTATCCAGGGCGAACCTGGCGCTGTCATCCGTGGCAAGAAGGTATACATGCATGCATGCATGCA
TCTCTCGGC---TTT-CCAAAATTATACTACCACTATTACGTGTTTTTGGAAAATTGATTGATCGTTCCCTGTGCTTCGT
CATGTTAATTTGCGCTTCATCCGACCTGCAGGGAGCAGGAGGCATCACCATCAAGAAGACCGGGCAGGCGCTGGTGGTCG
GCGCCTACGAGGAGCCCATGACCCCTGGGCAGTGCAACATGGTGGTGGAGAGGCTCGGCGACTACCTTGTCGAACAAGGC
ATGTAGGCCA-CCCATCAATATAATGGCGTCCACGATGATC----GATCACACGATTTTCAAGATTCTCTTTTAAATATC
TACGGAAATATATGTGGGCCTTTTTTTT-CCTCTTCAAGCGGCTCTGGCGTCCATCACTCATGATGACCAGTTGCTCTAA
CAAGTTCCATTTGTAATGCCTTTTCGGCTTTCCTTCTTCTTCTTCTTCAGTGGGTCCATTATTTTGGTTGTCGTATGAAT
TGTGTTGACAACAAATTTTGCGCTATGTTTCTTTCGATTGTGAACTTATAGTATCTTTTATTTTATTTTATTTTATTTTG
AAAAGGCCTCTTTGATCGCAATGCAATCACATATATTAA-----------------------------------------
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--------------------------------------------------TCCTCTTCTGTTGTGGCTGCGTTTATAATC
G------------------------------------------TCAAGAAACGACATAGTTGCTTAGAAGAATTGGTTGT
TTCGCAAAAATGAGATGGAACATTCCACTTTTGCCTTAAAAACAGCTTGCTAGCACTAAATTTTTCACGCACGCATTTTG
TATTTGGTGTATTCATGTTGCTACAC------------------------------------------------ATTACC
AGCATGGAAATCTGACGAGAATAATTCAGTTGTTCACCAAGTATTGAAGCATGGTGTGAAAATGAAAAAGAAACAAAAAG
TGTTGTCGATGGAAAACTAGAGTTGTATCATGTATGCACTGAACAA-AAATATCTTGGTTGTTATAGTTAAATTTTCTAA
ATTATGCCCTCATCTTTATGTGCATGA-TTTT-CTATCCTAGCATCGAAAGCTATTAAATATATAGTTTCCCATCTTTTA
TATCCCTAACAAGATATTTTAATGCTAGAATTGAGTAAACATGACTATAAATATAGGCGTCGTATCATAGTCATGATTAA
GATATCA-AACTATCTTACTCGATAGTCTACTTATGTAATCAGTTGTTAATACATATAAACTTCCAAATAGTTATTATAT
ACAACATGAATCTCCAAAAAAAT----GTCATTATTGTATTTTACTCCGCAAACAGTACATATATGGATACCGATAATAT
C
>chr1D_21
--------------------ACTCCACAAGTTTGCTTCCTCCACTA--TGTATCTCAGGAATTAACCCTTATTTTGAATT
GTGTTCGCTCCTAAATAGTAGGTGGCCCTAGTGTAACACTAGTTATTTCTTGTTAAAATGGGTTGATATTTGTGAGTTTG
AATTTGTATATAGCAATC----GTGTGTGCGCGCGCGTGAATTGAAGACATGGCTTAAATCCACATTGGATTCTTATGGT
TTTGTCTTGTAATTCTTTCTGCGTTCGTAAATTTGGATTATGTTATATGCCAAGCTAGTCATCCATCCG--TTTTTTAAG
TTGTCACCTGTCATAATTTATCAAAGTGTTTTTCTACATATCCGCGTTACGTTGTTTGGAACCATGAAAGATCACCCAAA
CAACGGTTGATCGTAGACTTGATACCGGTGTCCGCATTTTGTTGAATTTATTTCAGACTTTTTCAGGATGTCCATTCAGT
GAAAGAGACGTTTTCGTC------------------AAGACTTCGTCAATCTAAAGATGTTGTGAGCGCTCAAGATCTCA
GAGGTGCTAATGAGGGATT---AAGTGCACGTGGGTGCGTACATTCATGGAGGTGAGTGCATCACTGCATCCACGTTCGG
GAAAACAAACAGCGGCCCGCGTCAAATTTGCATCTAAGCTCCACCCCGATTTACTTCGTCTCGAAATGGAGCGGCGAGGT
CGGAATATTCCAGCAAAACCGGTACCCATGAATCGACGGGCCCTGACCGATGAGCAAAGCCAGGGCAGGGCTGGGCAGGT
CCGCAAGCAAAGCATCCCCTGGAAAGACGGCGAGGGGCAAGGGCGCCGAGGGGCCAACGGGTGGCTGGGACGACGCGGGG
ATCCGCTCTTCCGCCACCCGCTCTCCTCTATTTATGGCGTCCACCGCCCAATCCACGCACCAGA-CCAACGAACTCCGAT
CGCCACTCCCCCAGAGAAAT---CCT----CCTCACCTCGAAACTTCCGTGAAGCAGCAAACGCAA--GTCCGGCCAAGA
TGTCGTGGCAGACGTACGTCGACGAGCACCTGATGTGCGACATCGAGGGCCACCACCTCGCCTCCGCGGCCATCCTCGGC
CACGACGGCACCGTCTGGGCCCAGAGCGCCGACTTCCCCCAGGTCACCGCCGGCATGCCCGCCGCCTTC----AGATTTC
GTGTATGATATGATCTCGTAGATACGTTTTCCCCATATCTCACGGTGCTGGTTGGTTTTGGTTTTTGCGTGGCGTCCAGT
TCGCGCCCGCCGAGATCACTGCCATCATGAAGGACTTCGACGAGCCGGGGCACCTCGCCCCCACCGGCATGTTCGTTGCA
GGTGCCAAGTACATGGTCATCCAGGGTGAACCTGGCGCTGTCATCCGTGGCAAGAAGGT--------ATGCACGCATGCA
TCTCTCGATCGTTTT-CTAGAATTATATA------------TGTTCTTGAAAA----ATTGATCGATCCCTGTGCTTCGT
CATGTTACTTTGCGGTTCATCCGGCCTGTAGGGAGCAGGAGGCATCACCATCAAGAAGACCGGGCAGGCGCTGGTGGTTG
GCGCCTACGAGGAGCCCATGACCCCTGGGCAGTGCAACATGGTGGTGGAGAGGCTCGGCGACTACCTCGTTGAACAAGGC
ATGTAGGCCACCCCATCAATATAACGGCGTCCACGA----C----GATCACACAATTTTCAAGATTCTCTTTTAAATATC
TACGGAAATATATGTGGGCCTTTTTCC-CCCTCTTCAAGCGGCTCTGGCATCCATCACTCATGATGACCAGTTGCTCTAA
CAAGTTCCATTTGTAATGCCTTTTCGGCTTTC------CTTCTTCTTCAGTGGGTCCATTATTTTGGTTGTC-TATGAAT
TGTGTCGACAACAAATTTTGCGCTACATTTCTTTCGATTGTAAACTTATAGTACTTTTTATTTTATT----------TTG
AAAATGCCTCTTTGATTGCAATGCAATCGCATATATAGGTTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGTCCTCTTCTTTCATGGTTGCGTTTATAATC
G------------------------------------------TCAAGAAATGAAATTGTTGCTTAGGATCGCG---TGT
TTTTCAAAAATGAGACGGAACTTTGCACTTTTGCCTTAAAAACAACTTGCTACCACTAGATTTTTCACGCACACATTTTG
TATCTGGTGTATTCATGTTGCTGCACTAC----TGCAATACTGCTGCATGTCCTGCCACAATAAAACGATACATATTACC
AGTGGGGAAATC-GACAAGAATAATTCAATTCTTCACCAAGTATTGAAGCATGGTGTGAAAATGAAAAAGAAACAAAAAG
TGTTGTTGATGGAAAACTAGAGTTGTATCGTGTATGCACCGAAC-A-AAATATCTTGGTTGTTATAGTTAAATTGTCTAA
ATTATGCCCTCATCTTTATGTGCATGA-TTTTTCTATCCTAGCATCGAAAGCTATTAAATATATACTTTTCCATCTTTTA
TATAGCTAACAAGATATTTTAATGCTAGAAATGAGTAAACATGACTATAAATATAGGCGTCGTATCATAATCAAGATTAA
GATATCAAAACTATCTTACTCAATAGTCTACTTATGTAATCAGTTGTTAATACATATAAACTTCCAAATAGTTATTATAT
ACAACATGAATCTCC-AAAAAAT----GTCATTATTTTATTTTACTCCGCAAACAATACATATATGGATACTGATAATAT
C
>chr1B_21
--------------------ACTCCACAAGTTTGCTTCCTCCACAATTTGGAGCTCAGGAATTAACCCTTGTTTTGAATT
GTGTTCACACGTAAATAGTAGGTGCTTCTAGCGTAGCGCTAGTTATTCCTTGTTAAGATGGGATGAGATTTGTGAGTTTG
CGTTTGTATATAGCAAT--------TGTGTGCGTGTGTGAATTGAAAACATGGCTTAAATCCACATTGTATTCTTATGGT
TTTGTCTCATAATTCTTTCTACATTTGTAAATTTGGATTAT--------CCAAGCTAGTTATTCGTCTT--TTTTTTAAG
TTGTTATACGTCATAATTTATCAAAGTGTTTTTCTAACATATGGGCGTTAAGTGTTTGGACTCATGAAAGATCAGCCAAA
CAACGGCTGAGCTTAGACTTGACACTGTTGTTCACGTTTTGCTCAATTTATTTCAGCATTTTCCGAGACGTTCGTTCAGG
AGACGTTCCA------TCGAATACGAGGCATCTATAATGACTTCGTCAATCTCAAGGTGTTATGCGGGCTCAGGATCTCA
GAGGTGCTAATAGAGACAATGAGTGTGTGCTTGCATGCGTGCATTCATGGAGTGAGTGTATCTGAA-CATCCACGTTCGG
AAAAACAAAAAGCGGCCGGCGTCAAATTTGCAACTAGGCTCAACCCTGGTTTACATCGTCCCGAAATGGAGCGGCGAGGT
CCGAATATTCCAGCAAAACCGGTGCCCACGGATCGTCGGGCCCTGACGGATGAGCCAAGCCA----------GGGCAGGT
CCGCAAGCAAAGCAACCCCTGGAAAGACGGCGAGGGGCAAGGGCGCCAAGGGGCCAACGGGTGGCTGGGACGACGCGGGG
ATCCGCTCTTCCGCCCCCCGCCCTCCTCTATTTATGGCGTCCACCGCCCAATCCACGCACCAGAGCCAACGAACTCCGAT
CGCCACTCCCCCAGAGAAACGCCCCT----CCTCACCTTGAACGTCCAAGGAAGCAGCACACAAGTCCGGCCAGCCAAGA
TGTCGTGGCAGACTTACGTCGACGAGCACCTGATGTGCGACATCGAGGGCCACCACCTCGCCTCCGCGGCCATCCTCGGC
CACGACGGCACCGTCTGGGCCCAGAGCGCCGACTTCCCCCAGGTCACCGCCGGCATGCCGTCCGCCTTC----AGATTTC
CTGTATGATCTCTCGTAGATTCG----TTTCTCCATGTCTCACGGTGCTGGTTGGTTTTGGTTTTTGTGTGGCTTCCAGT
TCGCGCCCGCCGAGATCACTGCCATCATGAAGGACTTCGACGAGCCGGGGCACCTCGCCCCCACCGGCATGTTCGTTGCA
GGTGCCAAGTACATGGTTATCCAGGGTGAACCTGGGGCCGTCATCCGTGGCAAGAAGGT--------ATGCATGCATGCA
TCTCTCGAGTTTTCTACTAGAATTATATA------------TGTTCTTGAAAAATTGATTGATCGATCCCTGTGCTTCGT
CATCTTACTTTGCGGCTCATCCGGCCTGCAGGGAGCAGGAGGCATCACCATCAAGAAGACCGGGCAGGCGCTGGTGGTTG
GCGCCTACGAGGAGCCCATGACCCCTGGGCAGTGCAACATGGTGGTGGAGAGGCTCGGCGACTACCTCGTTGAACAAGGC
ATGTAGGCCACCCCATCAATATAACGGCGTCCACGATGATGATCAGATCACACAATTTTCAAGATTCTCTTTTAAATATC
TACGGAAATATATGTGGGCCTTTTGTTTCCCTCTTCAAGCGGCTCTGGCATCCATCGCTCATGATGACCAGTTGCCCTAA
CAAGTTTCATTTGTAATGCCTTTTCGGCTTTC------CTTCTTCTTCAGTGGGTCCATTATTTTGGTTGTCGTATGAAT
TGTGTTGACAACAAATTTTGTGCTACATTTCTTTCGATTGTAAACTTATAGTACTTTTTATTTTATT----------TTG
AAAAGGCCTCTTTGATTGCAATGCAATCGCATATATAGGTTGTGTGCAATCCCATCTATTGTCGCGGCGCCCCCGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGAAATTACATAGTTGCTTACAATTGGG---TCT
TTCGCAAAAATGAGACGGAACTTTGCACTTTAGCCTTAAAAACAACTTGCTACCACTAGATTTTTCACACACACATTTTG
TAC---------TCATGTTGCTGCACTACGTACTGCAATACTGCTGTATGTCGTGCCACATTAAGAA-ATACATATTACC
AGTGGGGAAATCT-ACGAGAATAATTCAATTGTTAACCAAGTATTGAAGCATCATGTGAAAATGAAAAAGAAACAAAAAG
TGTTGTCGATGGAAAACTAGAGTTGTATCGTGTATGCACTGAAC-ACAAATATCTTGGTTGTTATGGTTAAATTGTCTAA
ATTATGCCCTCATCTTTATGTGCGTGAATTTT-CTATCCTAGCATCGAAAGCTATTAAATATATAGTTTTCCATCTTTTA
TATTCCTAACAAGATATTTTAATGCTAGAATTGAGTAAACATGACTATAAATATAGGCGTCGTATCATAGTCATGATTAA
GATATCG-AACTATCTTACTCGATAGTC-ACTTATGTAATCAGTTGTTAATACATATAAACTTCCAAATAGTTATTATAT
ACAACATGAATCTCC-AAAAAATATATGTTATTATTGTA-TTTATTCCGCAAACAATACATATCTGGATACCGATAATAT
C
>SNPs
SSSSSSSSSSSSSSSSSSSS--------------------S------------------------S------------S-
-------S------------------------------------S---------SS------------------------
-----------------SSSSS-----S------------------------S---------------------------
------------------------------S---------SS------------------S--S-----SS---------
--------------S------------------------------------------------------S-----SS---
-------S----S----S------S-SS------S---------------------S----S--S---------------
--S---------S-S--S--S-----S--SS-SSSS--------S-------------S----S----------------
S---------------------------S--------SS---S--S----------------------------------
-----------------------------------------S-SS-----------------S--------S--------
----------S----------S----------------------------------------------------------
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--------------------------------------S-----------------------------------------
--------------------------SSSS--------------S-----------------------------------
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---------------------------------------------------------------------SSSS-------
-----------------------S---------------------------------------S----------------
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--------------------------S--------------------------------SSSSSSSS-------------
-------SS--------S-S-------SSSSSSSSSSSSSS----S---S---------------S--------------
-------S------S--------S------------------------------------------------------S-
-------------------------------------------------------------------S--S---------
------------------------S----------------------------S--------------------------
-------------------------------------------------S------------------------------
--------------------------------SSSSSS------------------------------------------
-------------------------SS--------------S-----------SS------------SSSSSSSSSS---
----------------S-----------S-------SSS-----------------------------------------
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-----------------------------------------------------------S-SS---S-------------
---------------------------------------------------S-----------------SSSSSSSS---
---------------S-----S--S-------------------S-------S-----S-------------S-------
---S------------------S---------------------------------------------------------
--SSS-----------------------S---------------------------------------------------
-----------------------------S--------------S-----------------------------S-----
---------------------------------------------------------------------S----------
---S----------------------------------------------------------------------------
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---------------S---------------------------------------S------------------------
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>forward_598
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------------------GGTTGAGTGTTCGTGGGTGA------------------------------------------
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>reverse_1528
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-------ATTTGCGCTTCATCCGACCT-----------------------------------------------------
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>forward_606
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--------------------------GTTCGTGGGTGAATGCGTTT----------------------------------
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>reverse_1535
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--------------CTTCATCCGACCTGCAGGG-----------------------------------------------
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>forward_1460
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TGCATCTCTCGGCTTTCCAA------------------------------------------------------------
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>reverse_2750
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-----------------------------ATGTATGCACTGAACAAAAATATCTTG------------------------
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