>input_sequence_73067
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-------------------------------------------ATGGACTACTTGGGGATGACAACAATTCCAAAGAAAC
ACATAGTCAAGAGATGGACGAAGGATGCAAGGGACATTTTGCCTGAGCACCTGCAGCACTACCAGAAAGATCAGATAACG
ACTAGCACGCTCACATTCAGGCACAACCGAATGTATGTGCAAGCGCTAGAGCTGGTCAGGTTGGGAGATGCCAGTGTCGA
GGCGTACGATACTTTGATGGGCTTGTTCAAGCAAGCCATGACTGTTATGGCACCGTACGACATGCAGAGGGACAGGCTGG
GCCTGGAAGACCGTGGCCATAACAGGAAGCAAGCGAATGGAGTCGTTGGCAAACGGGATAATGTGGAAAAAACCAAGAAT
CAAGATGAGGGGAGCGCCTTGGCGGGCCTTGAACCTCCAGCTAAGAAGAGGAATGCAGGTCGCCCCACCAATGCTAGAGA
CAGGCCACCATACGAAGGGCTTAGCAAGAGGAGCAGATTTTGCAGTATTTGCAAGGTACCAGGACACAAGAAGACTACAT
GCCCGCAACGAGAAGACGCGCCGAAGGTGCCCAGGAAAGAAGGTAGATGCAGCAATTGTGGTGTGGCGGGACATAGGAAA
AACACGTGCGACAGAGTTGGGGGCGACCAAGCTGATCAGCAGTAG-----------------------------------
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>chr1A_1_TraesCS1A01G233000
AGTTGGTAGGGCAATTTTCATTTTTCATATTTCGTTTTGGGTTCATTAGTGCCATCAATTATACTCACGCGTGAGCGGGT
CAAAAATGCAGATCAGTGCCGGGCTATGGAGGTCGCTATTAAGAATGTACTTCCTAACACGGCGCATCGGTGGTGTAAGT
GGCATGTGTTGAAGAAAGCCAAGGAAAGTTTGGGCGCAATGTTTGCGAAAAGAAATGAGTTTAGGCAGGAATTTCATAAA
GTGGTGGACCACATGCTCACGGTAGAGGAGTTTGAGGAGGCTTGGTGACAACTGCTGGAGAAGCACAATCTGAAAACACA
CCAGTATATGACAAATCTATTTGAGATCAGAGAAAAATGGGCAAAGTCGTACTTCAAGGGTGTGTTCTGCGCCAAGATGA
CGAGCACACAGCGGAGCGAGAGTGCGAACCATATGCTGAAGAGCTACGTGCCTCCGGGTTCTCCGATGCACAAGTTCGTG
AGGTAATACATGAGGTTGCAGTTTGACCGTGCATCGGACGAAAGTTACGAGGAAAAGCGAACGAAGCTGGTAAGTTAGCT
GGTAAATAGGCAAGCAAATG---TTTTTTTGATTGTGACTAATAACTGAAGCATTCCGTGGACTCAGGGCGGTGTGGTGT
TGCGAACGAACTCTTCAATAGAGATAGATGCAAGTAAGATATACACGCGGGCAATGTTCGAGCAATTCGGACAAATCTTG
TACGAGGCTGGAGGCTATCGAGTAGAAGAGATCGAGAAGCACTCTCTGTACAAGGCGATGCACACCAGGCCAGAGAAGCG
AGAGAAGTGGAGCAGAGTAGTCTTCATGGTGAAAATGCTAAGCGGCGGTGAGGAGTTCGAGTGCGAATGTGGTTTGTTCG
AGCACATGGGCATGTTGTGCTGCCATGTTCTGAAGGTAGTAATGGAACACTGGATTTAATCGCGGCACGTCTCGCTGATA
ACTGCATATTAAGTGCCAATTCCTGTGTTTTGCATGCCAGGTGATGGACTACTTGGGGATGACAACAATTCCAAAGAAAC
ACATAGTCAAGAGATGGACGAAGGATGCAAGGGACATTTTGCCTGAGCACCTGCAGCACTACCAGAAAGATCAGATAACG
ACTAGCACGCTCACATTCAGGCACAACCGAATGTATGTGCAAGCGCTAGAGCTGGTCAGGTTGGGAGATGCCAGTGTCGA
GGCGTACGATACTTTGATGGGCTTGTTCAAGCAAGCCATGACTGTTATGGCACCGTACGACATGCAGAGGGACAGGCTGG
GCCTGGAAGACCGTGGCCATAACAGGAAGCAAGCGAATGGAGTCGTTGGCAAACGGGATAATGTGGAAAAAACCAAGAAT
CAAGATGAGGGGAGCGCCTTGGCGGGCCTTGAACCTCCAGCTAAGAAGAGGAATGCAGGTCGCCCCACCAATGCTAGAGA
CAGGCCACCATACGAAGGGCTTAGCAAGAGGAGCAGATTTTGCAGTATTTGCAAGGTACCAGGACACAAGAAGACTACAT
GCCCGCAACGAGAAGACGCGCCGAAGGTGCCCAGGAAAGAAGGTAGATGCAGCAATTGTGGTGTGGCGGGACATAGGAAA
AACACGTGCGACAGAGTTGGGGGCGACCAAGCTGATCAGCAGTAGTAGTGCGATAGCTGAATTTTTCTCCTAACTGTAGA
AGCATGAGGCTAGAAAATCTTCACATTTCGAGATGAGAAACATTGTACTAGTGTTAGCAAACTAAGCGGCTGTCCCAATA
AGGTGTTTGAAAAGTTTGGTTTGATATAAGGCGAACCGCGGTGTAGCTACA-TTTACCATCCGATATGTTTGTCCCAGAG
AAAATACACGTGCGCATAGTATGGATGTCCTGAGAAGCTAGGTTGTTGACATCTGGCAGGCCATACAGTGCAGCGTGGGG
GGAGGTGTGATCAGTTTGAGAGTTCAAAATTCAAACTTAGTGCGGGCGGGATGTCCCACCCGGAGTTAGTATTCATAGGG
GGG-GTGGGGAGGGGGGTG-GTGGTGTGTGGAAAGCCTTGACACAGAGTGAGTGCCGCTCCAGTGTGTTGTGTTGTTAGT
AGTAGATCAAGCAAGAATGGCTCCATCCATCAGCTGGCCAAGCTCTGGAGTGCTCACCTCCGGCCTAGCATGGTCGCCCC
CAACATTCATCAATGATGAGGTTAGTGCAAAAACCCAGGTCGCTGCTATGTTTCCGTGGTATGCCCACTTGGGTGGTGGC
TGAAGGAAGTTGTATGTCACTGTCTTTCAGTTTGAAGCGTCTGAGAGCGACCAGTCTGTGGGCGGGGAAGAGGTGGAGCA
GGTCGGGGGTGGCGACTCGTCGGAAGCAGGGCAAGGAAACAACGAAGCTGATACGGTGAGCATAACCGGGGGTGAGGATG
AAGATTTTATGGATGAATGTGTTTGTTTGATTGTTGTTTCCAATTGGTTTGTTGTTGCAGGAATCTATGGAAGGCCGGAT
CGGGATGAATGACGAGGCTGGCATCTGGGCTAATGCTGAAACAAATGGTGCAGATGCGGGCGCCGTGGGGGAGCTGCAAG
AAGGTGGGGGCGAGCATGACCCAAAAGATTTGGAGGCAGTGCCCGAAGAAGACAGTGTGGATCTGCTGGAAGCAGGTGAA
GAATCAGG
>chr5A_1
AGTTGGTAGGGAAATTTTCATTATTCATTTTTT-TTCTGGTTTCATTGTTGGCATCAATTATACTCACGTGTGAGCCGGT
AAAAAATGTAGATCAGTGTTGGGCTATGGAGGTCGCTATTAAGAATGTACTTCCCAACACGATGCATCGGTGGTGTAAGT
GGCATGTGTTGAAGAAAGCCAAGGAAAGTTTGGGCGCAATGTTTGCGAAAAGAAATGAGTTTAGGCAGGAATTTCATAAA
GTGGTGGACCACATGCTCACGGTAGAGGAGTTTGAGGAGGCTTGGTCACAACTGCTGGAGAAGCACAATCTGAAAACACA
CCCGTATATGACAAATCTATTTGAGATCAGAGAAAAATGGGCAAAGCCGTACTTCAAGGGTGTTTTCTGCGCCAAGATGA
CGAGCACACAGCGGAGTGAGAGTGCGAACCATATGCTGAAGAGCTATGTGCCTCCGGGTTCTCCGATGCACAAGTTCGTG
AGGCAATACATGAGGTTGCAGTTTGACCGTGCATCGGACGAAAGTTATGAGGAAAAGCGAACAAAGCTGGTAAGTTAGCT
GGTAAATAGGCAAGCACAAA--TTTTTTTTGATTGTGCCTAATAACTGTAGCATTTCATGGACTCAGGGCGGTGTGGTGT
TGCGAACGAACTCTTCAATAGAGATAGATGCAAGTAAGATATACAGGCGGGCAATGTTCGAGCAGTTCGGACAAATCCTG
TACGAGGCTGGAGGCTATTGAGTAAAAGAGGTCGAGAAGAACTCACTGTACAAGGCGATGCACACCAGGCCAGAGAAGCG
AGAGAGGTGGAGCAGAGTAATTTTCATGGTGAAAATGCTAAGCGGCGGTGAGGAGTTTCAGTGCGAATGTGGATTGTTCG
AGCACATGGGCATGCTGTGCTGCCATGTTCTGAAGGTAGTAACATAAAACTAAATTTAATCGCAACACTTCTCGCTGATA
ACTGCATACTAAGTGACAATTCCTCTGTTTTGCTTGCCAGGTGATGGACTACTTGGGGATGACGACTATTCCAAAGAAAC
ACATAGTCAAGAGATGGACGAAGGATGCAAGGGACATTTTGCCAGAGCACCTGCAGCACTACCAGAAAGATCACATAACG
ACTAGCACGCTCACATTCAGGCACAACCGAATGTACGTGCAAGCGCTAGAGCTAGTCAGGTTGGGAGATGCCAGTGTCGA
GGCGTACGATACTTTGATGGGCTTGTTCAAGCAAGCCATGACTATGATGGCACCGTACGACAAGCAGAGGGACGGGCTGG
GGCTGGAAGACCATGGGCATAACAGGAAGCAAGCGAATGGAGTCCTTGGCAAACCGGATGATGTGGAAAAAAGCAAGAAT
CAAGATGAGGGGAGTGCCTTGGCGGGCCTTGAACCTCCAGCTAAGAAGAGGAATGCAGGCCGCCCCACCAATGCTAGAGA
CAGGACACCATATGAAGGGCTTAGCAAGAGGAGCAGATTTTGAAGTATTTGCAAGGTACCAGGACACAAGAAGACTACAT
GCCCGCAACGAGGAGACGCGTCGAAGGTGCTGAGGAAAGAAGGTAGATGCAACAACTGTGGCGTGGCGGGACATAGGAAA
AACACGTGCGACAGAGTCGGGGGCGACCAAGCTGATCAGCAGCAGTAGTGCGACGGCTGAATTTTTCTCCTAAATGTAGA
AGCATGAGGCTAGAAAATCTTCACATTTCGAGATGAGAAACATTGTACTAGTGTTAGCAAACTAAGCGGCTATACCAATA
AGGTGTTTGAGAAGTTTGGTTTGATATGAGGCAAACCGCGTTGTAGCTACA-TTTACCGTCTGATATGTGTGTCCCAGAG
AAAATACACGTGCCCATAGTCTGGATGTCCTGAGAAGCTAGGTTGTTGACATCTGGCAGGCCATACAGTGCAGCGTGGGT
GGAGGTGTGATCAGTTTGAGAGTTCAAAATTCAAACTGAGTGCGGGCGGGATGTTCCACCCGGAGTTACTATTTATAGGG
GGGTGTGGGGAGGGGGGTGTGTGGTGTGTGGAAAGCCTTGACACAGAGTGAGTGTCGCTCCAGTGCGTTGTGTTGTTAGT
AGTAGATCAAGCAAACATGGCTCCATCCATCAGCTGGCCAAGCTCTGGAGTGCTCACCTCCGGACTAGCATGGTCGCCCC
CAACGTTCATCAACGATGAGGTTAGTGCAAAAAA-CAGGTCGCTGCTATGTTTCCGTTGTACGCCCACATGGGTGGTGGC
TGAAGGAAGTTGTATGTCACTGTCTTTTAGGTTGAAGCGTCTGAGAGCGACCAGTCTGTGGGCGGGGAAGAGGTGGAGCA
GGTCGGGGGTGGCGACTCGTCGGCAGTAGGGCAAGGCAACAATGAAGCTGATACGGTGAGCATAGCCGGGGGTGAGGATG
AAGATTTTATGGATGAATGTGTTTGTTTGATTGTTGTTTCCAAATGGTTTGTTGTTGTAGGAATCTGTGGAAGGCTAGAT
CAGGATGAACGAGGAGGCTGGCATCTGGGCTGATGCTGAAGCAAATAGTGCAGATGCGGGCGCCATGGTGGAGCTGCAAG
AAGGTGGGGGCGAGCATGACCCAGAAGATTTGGAGGCGGTGGGCGAAGGCGACAGTGTGCATCAGCTGGAGGCAGGTGAA
GAATCAGG
>chr4D_1
AGTTGGTAGGGCAATTTGCAATTTTCATTTTCCATTCTGGATTCATTATTACCATCAAGTGTACTCACATGTGAGCCGGT
CAAAACTGCAGATCAGTGCCGGGCTATGGAGGTGGCTATTAAGATTGTACTTCCGAACACAGTGCATCGGTGGTGTAAGT
GGCATGTGTTGAAGAAAGCCAAGGAAAGTTTGGGCGCAATGTTTGCGCAAAGAAATGAGTTTAGGCAGGAATTTCATAAA
GTGGTAGACCACATGCTGATGGTAGAGGAGTTCGAGGAGGCTTGGACACAACTGGTGGAGAAGCACAACCTGAAAACACA
CCAGTATATGACAAATCTGTATGAGATCAGAGAAAAATGGGCAAAGCCGTACTTCAAGGGTGTTTTCTGCGCCAAGATGA
CGAGCACACAGCGGAGTGAGAGTGCGAACCATATGCTGAAGAGCTATGTGCCTTCGGGTTCCCTGATGCACAAGTTCGTG
AGGCAGTACATGAGGTTGCAGTTTGACCGTGCATCGGACGAAAGTTACGAGGAAAAGCGAACGAAGCTGGTAAGTTACTT
GGGAAATTTGTAAGCACTAAGTTTTTTTTTGATTGAGCCTAATCACTGAAGCATTCCGTGGACTCAGGGCGGTGTGGTGT
TGCGAACGAACTCTTCAATAGAGATAGATGCAAGTAAGATCTACACGCGGGCAATGTTCGAGCAATTCGGGCAAATCCTG
TACGAGGCTGGAGGCTATCGAGTAGAAGAGGTCGAGAAGCACTCTCTGTACAAGGCGATGCACACCAGGCCAGAGAAGCG
AGAGAAGTGGAGCAGAGTAGTTTTCATGGTCAAAATGCTAAGCGGTGGTGAGGAGTTCGAGTGCGAATGTGGATTGTTCG
AGCACATGGGCATGCTGTGCTGCCATGTTTTGAAGGTAATAAGGGAAAACTGAATTTAATCGCAGCATTTCTCGCTGATA
ACTGCATATTAAGTGACCATTCCTCTGTTGTGCATCCCAGGTGATGGACTACTTGGGGATGACGACAATTCCAAAGAAAC
ACATAGTCAAAAGATGGATGAAGGATGCAAGAGACATTTTGCCGGAGCACCTGCAGCACTACCAGAGAGATCAGATAACA
ACTAGCACGCTCACATTCAGGCACAACCGAATGTACGTGCAGGCGCTAGAGCTAGTCAGGTTGGGAGATGCCAGTGTCGA
GGCGTACGATACTTTGATGGGCTTGTTCAAGCAAGCCATGACTATGATGGCACCGTACGACAAGCAGACGGACGGGCTGG
GCCTGGAAGACCGTGGCCATAACAGGAAGCAAGCGAATGGAGTCGTCGGCAAATGGGTTGATGTGGCAACAAGAAAGAAT
CAAGATGAGGGGAGCGCTATGGCGGGCCTCGAACCTCCAGCTAAGAAGAGGAATGCAGGACGCCCAACCAATGCTAGAGA
CAGGGCACCATACGAAGGGCTTAGCAAGAGGAGCAGATTTTGCAGCATTTGCAAGGTGCCAGGACACAAGAGGACTACAT
GCCCGCAACGAGGGGATGCGCCGAAGGTGCCCAGGAAAGAAGGTAGATGCAGCAACTGTGGTGTGGCGGGACATAGGAAA
AACACGTGCGACAGAGTCGGTTGCGACCAAGCTGATCAGCAGCAGTAGTGCGACGGCTGAATTTTTCTCTTAACTGTAGA
AGCATGAGGGTAGAAAATCTTCAGATTTGTAGATGAGAGTCATTGTCCTCGTGTTAGAAAACTAAGCGGCTGTCCCAATA
ATGTGTTTGACAAGTTTGGTTTATTGTAAGGCGAACTGCACTGTACCTCCATTTTACCGTCCAATATGTGTGTCCCAGAG
AAAATACACGTGCCCATCGTATAGATGTTCTGAGAAGCTAGGTTGTTGACATCTGGCAGGCCATACAGTGCAGCATGGGG
GGTGGTGTGAGCAATTTGAGAGTTCAAAATTCAAACCGAGTCCGGGCGGGATCTTCCACCCGGAGTTAGTATTTATAGGG
GGGTGTGGGGAGGGGGAGG---GGTGTGTGGAAAGCCTTGACACAGAGTGAGTGCCGCCCCAGTGCGTTGTGTTGTTAGT
AGTAGATCAAGCAGGAATGGCTCCATCCATCAGCTGGCCAAGCTCTGGAGTGCTCACCTCCGGCCTAGCATGGTCGCCTC
CAACGTTCATCAACGATGAGGTTAGTGCAACTA-CCAGGGCGCTGCTATGTTTCCGTGGTACGCCCACATGGTTGGTGGC
TGATGGAAGTTGTATGTCACTGTCTTCCAGGTTGAAGCGTCTGAGAGCAACCAGTCTGTGGGCGGGGAAGAAGTGCAGCA
GGTCGGGGGTGGCGACTCGTCGGCAGCAGGGCACGGGAACAATGAAGCTGATACGGTGAGCCTAACCGGGGGTGAGGATG
AAGATTTTATGGATGTATGTGTTTGTTTGATTGTTACTTCCAATTGGTTTTTTGTTGCAGGAATCTGTGGAAGGGCAGAT
CGGGATGAGCGACGAGGCTGGCATCTGGGCTGATGCTGAAACAAATGGTGCAGATGCGGGTGCCGTGCT----CTGCAAG
AAGGTGGGGGCGAGCATGACCCGGAAGATTTGGAGCCAGTGGGCGAAGACGATGGTGTGGATCGGCTGGAGGCAGGTGAA
GAATCAGG
>SNPs
----------------------------S----S--S---S-------S--------------------S------S---
------------------------------------------------------S-------S-----------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------------------S----------------S----------------
----------------S-----------------------------S---------------------------------
---S----------------------------------------------------------------------------
----------------S-SS-----------------S------------------------------------------
-----------------------------------------------------------------------------S--
------------------------------S-------------------------------------------------
---------------------S--------------------------------------------------S-------
--------------S---------------------------S----S----S----------S----S-----------
---------------S--------S--------------------------------------S----------------
-------------------------------------------S------------------------------------
-----------------------------------S-----------------S--------------------------
-------------------------------------------S-S----------------S----------S------
-----------------------------------------------------------S------------S-------
-----------------------------------------------------------S--------------------
----S---------------------------------------------------------------------------
------------S------------------------------------------S------------------------
-----------------S------------------------S----------SS-------------------------
--------------------------------------------------------------------------------
----------S-----------------------------S-----------------S----------S----------
-------------S------------------------------------------------------------------
-------------------------------------S----------------S------------------S------
-----------------------------------------------------------------S--------------
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----S--------S-------------------S---------------------------S------S-----------
------------------------------S-------------------------------------------------
-----------------------S------------S-----S-------------------------------------
------------------------------------------------------------------S---------S---
---------S---------------------S------------------------------------S-----------
-----------------------S-----------------SS------S-------------S------S---------
--------
>forward_484
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----------------------------------------------------------------GATGCACAAGTTCGTG
AGGT----------------------------------------------------------------------------
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>reverse_2363
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------------------------------------------CGAAGCTGATACGGTGAGCA------------------
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