>input_sequence_73049
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-------------ATGGATATAATTGTTCCTGCAGTCGTAGGTGATATTGTCAACAGAGCTGTATCCTTTGCCATCAAGA
AATGCTTGCAGCTTCCAGACATCGACAAGAATCTGGAGCGGCTACATCAGTTGCTTCTAAGAGCCCATACCATCACCGAG
GAGGCCGAGGGAAGGCTTATCAACAATCGAGAGATGCTTCAACAGCTGGGGATATTGATAGAAGGGATGCAGAGAGGCCA
CTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGGGGATGAGCAGGAGGTGAGTCAGTTCTCTGGAT
TATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTTGTCCAATAACTACGGAAAATCAGTGCTCTTTGGTAGTAACAACATA
GAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGACTTGAAGGAGTTTGTTATTTTTCTGGGGAACTA
TCCTCCAATCTGCCGCTAGCCTTTTCCGCATACTTTATTTTGGGAAATTGGTTGTTCTTTTGCCTGAAGGGATGTGAATG
GTTGAACCACAGAAGCTCTTCGGTTAGATTTTGCTTGCATCAAGAAGCTTACTGGTAGATTTTCAGGATGCTTGCATTTG
GAAGCGCAAATCCTGA----------------------------------------------------------------
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>chr3A_1_TraesCS3A01G287300
TTGTTGTTAGTGTCCAGGAGAGCAATACAGGTCTTTTTATGTGT----------------------------AGAGGACT
AGATATATGACGATGGATTTCTGGCTACTTAGTATTTCACTTCCTAGGTTTGGTAATTGGCATCATATTTTACGCCTTCT
TGACGTGTTCTTATAATACA------AAACCAACATGTATGATTATTAGGATCTATGTTAATTTCTTCTGGCATCCAAAC
CACCAACTGCCCCTTTCCAGTCACCAC-------TCTGTTTTGCTGTCTGTTGGTGCCATCCTTCCCCTTTCCGACGCCG
ATCCATCCACCCCGAAAGGGATTGGCAAAACCCTGCTAGACCGTAGGAGCACTCTACCACTAATTGTAGCACAGCTCACG
TTCCTTTTCGGACGCAGTAGTCCAAAATAGTGGTAAGTACACTGACACTGTGCGGTTTTCTCAACTCTCAAGGCAATGTA
GAGGGTTCATTTCCTTCTGATGTGTACCTGCCGTCTTGGTTCTTCTCCTCGAAATAAAAGCAGCTACATGTTCTGATGTT
GCTCGTTAATAAGACAAACAGGCAAGAGCCACATCCAGGACAACGCTACTTCACACGCGGATG-TTTATTCTTTCTTGGT
GGCATTGCTGCGGAAGAAATCAATCTAGTCGTAGGTGTTCATTTCATATCTTGTAATGGTTTGACTGTGCTTGCCCATAT
TCTGTACTCTGCTTGTTGATTTTTTTGGCCTCGCTGCCTTACATCAATTATAATAAAATATGGCTGTGTGCATCAATGAT
TGGGGGTTTCAACCTCCTTTTTG--------AAAACAGTTGATCTTGGTTCCGGGACTCTACCAATTAGCAGAAGAGCTA
TTGATGTTAATTATTTTTCGGGACTCTAGCAACTATCAGATGGTAAGACAGTGATATGTTAAAGAGGGTCATTAAAGAAA
GACTAGAGAAACCTGGCATATTAG---ACCACCACCACTTGATATCTCCGTTGCCATTTCATTTCATTGCGGCAACTTCG
ACGGAGGTTCACAATGGATATAATTGTTCCTGCAGTCGTAGGTGATATTGTCAACAGAGCTGTATCCTTTGCCATCAAGA
AATGCTTGCAGCTTCCAGACATCGACAAGAATCTGGAGCGGCTACATCAGTTGCTTCTAAGAGCCCATACCATCACCGAG
GAGGCCGAGGGAAGGCTTATCAACAATCGAGAGATGCTTCAACAGCTGGGGATATTGATAGAAGGGATGCAGAGAGGCCA
CTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGGGGATGAGCAGGAGGTGAGTCAGTTCTCTGGAT
TATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTTGTCCAATAACTACGGAAAATCAGTGCTCTTTGGTAGTAACAACATA
GAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGACTTGAAGGAGTTTGTTATTTTTCTGGGGAACTA
TCCTCCAATCTGCCGCTAGCCTTTTCCGCATACTTTATTTTGGGAAATTGGTTGTTCTTTTGCCTGAAGGGATGTGAATG
GTTGAACCACAGAAGCTCTTCGGTTAGATTTTGCTTGCATCAAGAAGCTTACTGGTAGATTTTCAGGATGCTTGCATTTG
GAAGCGCAAATCCTGACCTGATGAGCAACCAACGCCTGCATGGTTAGCCACAGTT-------ATTGCAACAGAGTCTGAG
GGTCCTCCCTTGCCT-------TGATTCGTTGATCAGCAAGAGACAATTTCAGTGCTCGAGTCTGGTGCTTGGCTCGTGG
ATATCTGATGGCATACACACACAGGCAGCTCCTTCTGTTTGGTGAACACCCGAATAAACTTCTGTTGAGAGATCAACCAT
GACACTGCTTGAGAATTGCCTGAATCCAGTGATGTGTTCTGGATTTCAGATTACTACTCCATGGCGCTTTCCAGCCAGAA
CCAACTCCTCCAAGAGCAAGATCACTGTGTCAGTAGGATTCATGTCATGATGTGATATGCGCTATTGCCTATATGAGAGA
TTTGATGCT--------------CTGAAAGGCGAGGGTGGAGAACGAGAACACGCCGTGGGCAGGATGAAGAG-------
AGTCTAAAAGCTGCATTTGATCTCTG-TGTAAAAGCTGCATTTGCTGAGTAGTCTAAAAGCTGCAGTTGATATATGCTAA
TTAGTTGTGTGAGTAGTGAAGAGTGATTAGTGATTGTGATGCATGCTAGCACTCAAGCATTTGCTGGAAATGCTATA---
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---------------------------------------------TATATCTGTGGCATTTTGGATTCATTCTATGTCTC
CATTTTTACTGTGTTCTTGGCGGGTTTTGTGTGTGTGTGCGCGCACGCGCGTGCGCTCTCATAATTTGTGCACTGAGCCT
CAGCCGGTGCGGCGCTGCTGCGCCGTGACCGTGA------GCTCGCCGGCAAAACAGCCATCGCTGCAGCGCTGCTGCTG
CTGCTGGGCCTTCTCTGATGGCGCCAGTGAGGAGAAACACAGCCAAAAATCCTGAGCGCACCCGATCCAGTCGGACGAGC
ACAGGACCTGCAGAAAGGCACCGACAGCGCCGCC-----------GCCGTCGCGCCGGGATTCGCACGGTG------CCT
GCCGTCCGTCTAGAAGCCACACCGCCGCAAGTAGGGACCGTACTTGCCTATCATCCGGTCCGACGATGCCGACTCATAAT
AAT
>chr3B_1
TTGATGTTAGTGTCCAGGAGAGCAATACAGGTCTTTTTATGTGTTTTTCAAGGGATAGGTCTTTCTATGTGTAGAGGACT
AG--ATATGACGATGGATTTCTGGCTAC----TATTTCACTTCCTAGGTTTGGTAATTGGTATCGTATTTTACGCTTTCT
TGACGTGTTCCTATAGTACA------AAACCAACATGTATGATTATTAGGATCTATGTTAATTTCTGCTGGCATCCAAAC
CACCAACTGCCCCTTTCCAGTCACCAGTCACCAGTCTGTTTTGCTGTCTGTTGGTGCCATCCTTCCCCTTTCCGACGCCG
ATCCATCCACCCCGAAAGGGATTGGCAAAACTCTGCTAGACCGTAGGAGCACTCTAGCACTAATTGTAGCACAGCTCACG
TTCCTTTTCCGACGCAGTAGTCCAAAATAGTGGTAAGTACACTGACACTGTGCAGTTTTCTGAACTCTCAAGGCAATGTA
GAGGGTTCATTTCCTTCTGATGTATACCTGCCGTCTTGGTTCTTCTCCTCGAAATAAAAGCAGCTACATGTTCTGATGTT
GCTCGGTAATAAGACAAACAGACAAGCGCCACATCCAAGACAATGCCACTTTACACGAGAACGTTTAATTCTTTCTTGGA
GGCATCGGTGCGGTAGAAATCAACTTAATCATAGGTGTTCATTTCATGTCTTGTACTGGTTTGACCGTGGTTGCCCATGT
TCCATACC------GTTGATGTTTTGGGCCTCGTTGCCTTACATCAACTATAATAAAATATGGCTATGTG----------
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>chr3D_120
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-------------------------------------------------------------------TTTTGCGCCTTCT
TGACGTGATCTTATAGTACAAGTACAAAACCAGCATGTATGATTGTTAGGATCTATGTTAATTTCTTCTGGCGTCCAAAC
CACCAACTGCCCCTTTCCAGTCACCAC-------TCTGTTTTGCTGTCTGTTGGTGCCATCCTTCCCCTTTCCGACGTCG
ATCCATCCACCCTGAAAGGGATTGGCAAAGCTCTGCTAGACCGTAGGAGCACTCTAGCACTAATTGTAGCACAGCTCACG
TTCCTTTTCGGACGCAGTAGTCCATAATAGTGGTAAGTACACTGACACTG--CAGTTTTCTGAACTCTCAAGGCAATGTA
GAGGGTTCATTTCCTTCTGATGTATACCTGCCGTCTTGGTTCGTCTCCTCGAAATAAAAGCAGCTACATGTTCTGATGTT
GCTCGGTAATAAGACAAACAGGCAACCGCCACATCCAAGACAACGCTACTTTGCACGAGGA-G-TTTATTCTTTCTTGGA
GGCGTTGCCGCGAAAGAAATCGATCTAGGTGTAGGTGTTCATTTCATATCTTGTAATGGTTTGACCGTGGTTGCCCATGT
TTTATACTCTGCTTGTTGATGTTTTTGGCCTCGTTGCCTTACATCAACTATAATAAAATATGGCTGTGTGCATCAATGAT
TGGGGGTTTCAACATCCTTTTCGAAAAGAAAAAAACAGTTGATCTTGGTTCTGGGACTCTACCAACTAGCAGAAGAGCTA
TTGATGTTAATTATTTTTCGGGACTCTAGCAACTATCAGAAGGTAAGACAGTGATATGTTAAAGAG-GTCATTAAAGAAA
GACTAGAGAAACCTGGCATACTAGACCACCACCACCACTTGATATCTCCGTTGCCATTTCATTTCATCGCGGCAGCTTCG
ACGGAGGTTCACAATGGATATAATTGTTCCTGCAGTCGTAGGTGATATTGTCAACAGAGCTGTATCCTTTGCCATCAAGA
AATGCTTGCAGCTTCCAAACGTCGACAAGAATCTGGAGCGGCTAAATCAGTTGCTTCTAAGAGCCCATACCATCACCGAG
GAGGCGGAGGGAAGGCTTATCAACAATCGAGAGATGCTCCAGCAGCTGGGGATATTGATAGAAGGGATGCAGAGAGGCCA
CTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGGGGATGAGCATGAGGTGAGTCACTTCTCTGGAT
TATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTCGTCCAATAACTACAGAAAATCAGTGCTCTTTGGCAGTAACAACATA
GAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGACTTGAAGGAGTTTGTTATTTTTCTGGGGAACTA
TCCTCCAATCTGCCGCTAGCCTTTTCCACATACTTTATTTTGGGAAATTGGTTGTTCTTTTGCCTGAAGGGATGTGAATG
GTTGAACAACAGAAGCTCTTGGGTTAGAGTTTGCTTGCATCAAGAAGCTTACTGGTAGATTTTCAGGATGCTTGCATTTG
GAAGCGCAAATCCTGACCTGATGAGCAACCAACACCTGCATGGTTAGCCACAGTT-------ATTGCAACAGAGTCTGAG
GGTCCTCCCTTGCCTTCATACATGATTCGTTGATCAGCAAGAGACAATT--AGTGCTCGAGTCTGGTGCTTGGCTCGTGG
ATATCTGATGGCATACACAGACAGGCAGCTCCTTCTGTTTGGTGAACGCCCGAATGAACTTCTGTTGAGAGATCAACCAT
TACATTGCTTGAGAATTGCCTGAATCCAGTGATGTGTTCTGGATTTCAGACTACTACTCCATGGCGCTTTCCAGGCAGAA
CCAACTCCTCCAAGAGCAAGATCACTTTGTCAG----ATTCATGTCAGGATGTGATATGCACTATTGCCTATACGAGAGA
TTTGATGCTCCAGGCCACGGGTGCTGAAAGGCGAGGGTGGAGAACGAGAACACGCCGTGGGCAGGAACAGGAAGAAGAGC
AGTATAAAAGCTGCATTTGATCTCTATTGTAAAAGCTGCACTTGCTGAGTATTCTAAAAGCTGCAGTTGATGTATG-TAA
TTAGTTGTGTGAGTAGTAAATGGTGATTACTGATTGTGATGTATGCT---ACTCAAGCATTTGCTGGAAAT---ATA---
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---------------------------------------------TATATCTGTGGCATTTTGGCTTTGTTCTATGTCTG
TGTTT---CTATGTTCTTGGCGTGTGTGTCAC-------------------------CTCATAATTTGTGTACTGGGCCT
CAGCCGGAGGGGCGCTGCTGCG------CCGTGA------GCTCGCCGGCAAAACAGCCATCGCACT---GCTGCTGCTG
CTGCTGGGCCTTCTCTGATGGCGCCAGTCAGGAGAAACACAGCCAAAAATCCTGAGCGCACCCGA---------------
------CCTGCAGAAATGCACCAACAGCGCCGCCAAAAGTAGGCACGCAA--------------------------CCCT
GCCGTCCGTCTAGAAGCCACACCGCCGCAAGTAGGGACCGTACTTACCTATCGTCCGGTCCGACGATGCCGACTCATAAT
AAT
>chr3B_896
GGGCA---------------------------------------------------------------------------
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-----------------------------------------------------------------------TTAAAGAAA
GACTAGGGAAACCCGGCATATTAG---ACCACCACCACTTGGTATCTCCGCTACCATTCCATTTCATCGCGGCAACTTCG
ACGGAGGTTCACAATGGATATGATTGTCCCTGCAGTCATAGGTGATATTGTCAACAGAGCTGTATCCTTTGCCATCAAGA
AATGCTTGCAGCTTCCAGACGTCGACAAGAATCTGGAGCGGCTAAATCAGTTGCTTCTAAGAGCCCATACCATCACTGAG
GAGGCCGAGGGAAGGCTTATCAACAATCGAGAGATGCTCCAGCAGCTGGGGATATTGATAGAAGGGATGCACAGAGGCCA
CTATATGCTTGATAACTTCAAATGTCGAGACCTTCAAGAAGGGAGAGGGGACGAGCATGAGGTGAGTCACTTCTCTGGAT
TATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTCGTCCAATAACTACAGAAAAGCAGTGCCCTTTGGTAGTAACAACATA
GAAGACCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGACTTGAAGGAGTTTGTTATTTTTCTGGGGAACTA
TCCTCCAATCTGCCGCTAGCCTTTTCCACATGTATTGTTTTGGGAAATTGGTTGTTCATTTGCCTGATGGGATGTGAATG
GTTGAACAACAGAAGCTCTTGGGTTAGATTGTGCTTGCGTCAAGAAGCTTACTGGCAGATTTTCAGGATGTTTGCATCTA
GAAGCACAAATCCTGA-----TGAGCAACCAAGATTTGCATGGTTAGCCAGTAGCCACGGTGATTGCAACAGAGTCTGAG
GTCCTTT-CTTGTCCTCATACATGATTGGTTGATTACCGACAGGCAATTTCGTTGCTCAATTCTGGTGCTCGGCTCGTGG
ATATCGGATGGCATACACACACAGGCAGCTCCTTCTGTTTGGTGAACACCCGAATAAACTTCTGTTGAGAGATCAACAAT
TACATTGCTTGAGAATTGCCTGAATCCAGTGACGTGTTC----TTTCAGATTACTACTCCATGGCGCTTTCCAGCCAGAA
CCAACTCCTTCAAGAGCAAGATCACTGTTGTC--AGGATTCATGTCAGGAT-----------------------------
------GCT--------------CTGAAAGGCGAGGGTGGAGAACCAGAACACACCGTGGACGGG--CAGGAAGAAGAGC
AGTCTAAAAGCTGCATTTGATCTCTG-TGTGAAAGCTGCATTTGCTCAGCAGTCTAAAAGCTGCAGTTAATGTATGTTAA
TTAGTTGTGTGAGTAGTGAAGAGTGATTAATGATTGTGATGTATGCTAGCACTCAAGCATTTGCTGGAAAT---ACTATA
TACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGACATATTTTAGTTATAGATACAT
CCCTTTCTATCCATTTTGATGACGAGTATTTTCGGACGGAGGGAGTATATCTGTGGCATTTTGGCTTCGTTCTATGTCTC
CGTTTTTATTTTGTTCTTGGCGGGTTTTGTGTGCAC------------------------------TGAGCACTGGGCCT
CAGCCGGAGCGGCGCTGCTGCG------CCGTGACTGTGAGCTCGCCGGCAGAACAGCCATTGCTGCGGCACTGCTGCTG
GTGCTGGGCCCTCTCTGATCGCGCCAGTGTGGAGAAACACAGCCAAAAATCCTGAGCGCACCCGATCCAGTCGGACGAGC
ACAGGACCTGCAGAAATGCACCGACAGCGCCGCCAAAAATAGGCCGCCGTCGCGCCGGGATTCGCACGCTATGCTCCCCT
GCCGTCCGTCTAGAAGCCACACCGCCGCAAGAAGAG---------ACCTTTCGTCCGGTCCGACGATGCCGACTAATAAT
AAT
>SNPs
---S----------------------------------------------------------------------------
--SS------------------------SSSS----------------------------S---S---------------
---------------S----------------------------------------------------------------
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-------------------------------S------------------------S-----------------------
-----------------------------------------------------S-------S------------------
-----------------------S--------------------------------------------------------
-----S--------------------S----------S-------------S-----S---S-----------------S
-----------------------------------------------------------------S---S--------S-
---S----------------S------------S-------------S--------------------------------
-------------S-------S-----------------------------S-------------S--------------
----------------------------------------S-------------------------S-------------
-------------------------------------------------------------------S------------
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--------------------S-----------------------S-----------------------------------
--------------------------------------S--S--------------------------------------
---------------------------------------------------------S-----------S----------
---------------------------------S-------------S--------------------------------
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---------------------------S----------------------------------------------------
-------S------------S-----------------------------------------------------------
---------------------------------S----------------------------------------------
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S---S---------------------------------------------------------------------------
---------------------------------S-------------S------------S------------S------
------------------------------------------------------------------SS-S--S-------
-----------------------------------------------------------------------S----S---
-----------------------------S-----------S-----------------------------SSS------
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----------------------------------------------------------------S---S-----------
-S--------S----------------------SSSSSSSSSSSSSSSSSSSSSSSS------------------S----
-------S--------------SSSSSS---------------------------------------S------------
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----------------S---------------------------------------------------S-S---------
---------------------------------------------S------S---------------------------
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>forward_618
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--------------------------------------GACAACGCTACTTCACACGC----------------------
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>reverse_2491
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----------GTGTTCTTGGCGGGTTTTGT--------------------------------------------------
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