>input_sequence_73037
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-------------------------------------ATGGCATGCGTGAACATGTACAACCCGGACGGCGGCGCGGTGG
CGTTCGGCGGCGGGCAGCCTGGTCCGCGCATCTCCTTCTCCAGCGACTTCTCCATGGAGCCGCCGCCGCCGGTGCAGAAC
CGGGCCATGGGCCTGCGGTGCCAGGAGGAGGACCAGAACTTCGAGTTCTCCGTGGGCAGCCACCCCATGATGGCCGCCGA
CCAGCTCTTCTCCAAGGGCCGGATCCTCCCCTTCAAGGTCGAGGGCGGCCGCCCGCCCTCCACGCTCCGCGACGAGCTCC
GTGCCGGCGCCGCCGACGACGACAGGGCGTCCACCACG---CCCAAGGGGTCCAGCCGGTGGAGGGAGATGCTCGGCCTC
CGGAAGTCGCTCTGCGTCGGCGGCGGCGTCGCCAGTAATGCCGCCGCGGCCGCCAAGAAGAGCGACAAGGTCGTCGCCGT
CGACGCCGACGCCAAGATAGCCACCGACATGGCCGCGCCCAAGCAGGTCCGTCCGCTGGTCATCTCCATGTAGTA-TCTT
TGCAGTCCACGTTAGCCATGTA---CAGCATAG------T---AGTACGCAATTAATTAATTAATTGATTA-----AGAG
CTGTTGGATGAAGTGATAGGTTGTCTCATTACAGATGGTTTGACCCATTGCAGGAGCCATGA------------------
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>chr6D_1_TraesCS6D01G301000
GGATTATGATAATGCCAATCACAAGCTGGACAGCCATTGTTTGACCGCGGCGAGGCCGAGGACCGGCATTCGCC------
-ACACGTCCAAGCAAC---TAGCACGCTTCCAAACAAGGAAGAATCGCTGCTGGGTGCTGGCACACCGACGCTCCTGACT
CCTGAGATTCTTCTCCCGCCATGAGCGCCGCACGCACGCGTCCATGCCCTCCGATCCGTATTGGGACTTGCGATCTATCC
TCCCAAGATCGCATGGCCTATCAACGGCCCGGCCTTCTTATCCTGGGCCTGGAGCTGACATGGAAAAAGAAACA------
CAAAACAACAGTCCGTTCCAGAACGATCCGGTGCTCTCAGTGAAAAGGTTTGAACAGTTGTACAGTGGCATGCAGTGAGT
-ATGCTGTGGCGGTCTTTCAAGACGTCACCACGGTTTCAAGTTTCAGA---TGCCGTGACTCGAGAGTCAAGTTCCCTGT
TTCAGTTAATGTAATGACAGATGAGTGGCTGGCCTTCAAAGCATAACTACGAAAAGCCATGACCAACCCTTACGTTTCCT
ATGGTTCGAGTAAACCCACATGCCCACATA----CGTATGGCCATGCCGACATTATTTCTTACTGAAATGCCGACATTGT
TGTACTCAGTATACTT-----CCCCAAAAAATTCTAGAAAAAGCT---ACTAGTACTGTA---TTTCACCTGTAGCGCTG
ATCCATTGTTCACCCTTCACCGGTGGAGAAAACAGCTCGCCATGCATCTCAATCATCACCGTTTAGCGTTTACTACAGGC
GGTGCCAAACAATTGCAGTGCA----CATCTACCCAAAGCTTCATCCCAA-GCAGCTCCCCCTCTTCT-----CCTCTC-
----TATAAAACCCATCCAAATCCACCATCACCTCCACCCTCAGTG----ACCCGTAACAGTGCCCCGTTTCTTCAGCTC
ACACGCCAAG----------------ACCACCACCACCACCTTTTAAAAGCCGCACCGGAGCAG-------GCACCCAGT
CCACGACGACCGAGCCTACTGATCCAGCGCGCGAGCGATGGCATGCGTGAACATGTACAACCCGGACGGCGGCGCGGTGG
CGTTCGGCGGCGGGCAGCCTGGTCCGCGCATCTCCTTCTCCAGCGACTTCTCCATGGAGCCGCCGCCGCCGGTGCAGAAC
CGGGCCATGGGCCTGCGGTGCCAGGAGGAGGACCAGAACTTCGAGTTCTCCGTGGGCAGCCACCCCATGATGGCCGCCGA
CCAGCTCTTCTCCAAGGGCCGGATCCTCCCCTTCAAGGTCGAGGGCGGCCGCCCGCCCTCCACGCTCCGCGACGAGCTCC
GTGCCGGCGCCGCCGACGACGACAGGGCGTCCACCACG---CCCAAGGGGTCCAGCCGGTGGAGGGAGATGCTCGGCCTC
CGGAAGTCGCTCTGCGTCGGCGGCGGCGTCGCCAGTAATGCCGCCGCGGCCGCCAAGAAGAGCGACAAGGTCGTCGCCGT
CGACGCCGACGCCAAGATAGCCACCGACATGGCCGCGCCCAAGCAGGTCCGTCCGCTGGTCATCTCCATGTAGTA-TCTT
TGCAGTCCACGTTAGCCATGTA---CAGCATAG------T---AGTACGCAATTAATTAATTAATTGATTA-----AGAG
CTGTTGGATGAAGTGATAGGTTGTCTCATTACAGATGGTTTGACCCATTGCAGGAGCCATGAGAGGTGACCGGCCGATGG
GGACTGCGGCGACATGATCGAAAACCACCTTCTTCCTCGCCATCGCTCGCACCATGTTCACCGGTCTTCTCTCATCGTGC
TTGTCGATCGTACGTTTTGGGTGGCCCGATTGCCTGCGTGCTAGCTAGCTAG-----ATGGCCAG------TGTCCATGT
CCATGTGTGTGCATGTGTTGAAGAGCAAACAATTCTGTAATTTCACTTCTTTTTCTT---CTACTTTCATAAGTGATCCG
CTCTCGATCTCTAGCTAGC---TGTCCACTACCACTA---GAT------CCCCATCACCTCAC-----------------
-------TTCTCCTTCTTCTTCCAAGCTTTGTTTTTTCCTCCACCACCATCCGGCTCTGCCTGCCTGCCCATGGCCGGCC
TGTACATAATGCTTGTGTGTAGATGGGAAATTTATGGTGCAATGATTAGCCTTTGCCAGGCGGCCAGATCTGTGGCGACA
TGAGCTGAGCCCTTGCTGGCCTTTGTTGTAGGGATCATGCAACAGTGCGCTCCTTTGTCACCTTGCTCCGCTGTGCGCCA
CATGCATGCTTCCTTCTCCTCATCCGTCTACCCACGCGATGTGCCCGGCCGCATGTGGGTTTATATATAAAGGCAGACAG
GCGCCGCAGAGCCGGCGCGTGCGATCGAGCGAGCGAGCGAGAGAGAGAGACGGAGATCGATCGAGGG-------------
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----------------------------------------------------------------------------AACA
TGTCCTCTGCACTGGATGCATCATCGTCGTCCTGGCCGGCTAGATCGGTGTTAGTAGTAGTACTAATCTTATTGTATTGG
CCCGTACGT-------GAGCAAATGGTGCTCGGCTTTGCGCTTTGCAGGAGAAAATCAATAGTGGGAGTGTGGGACGGCT
ATGCTAGCGTTGCTTTAGCGCGTTTCGTGGGTGCACTGTCTCCC-CCGTAGGCTGCCAGAAGGTGGTCGTAGTGGATTTG
TATAAGATGATAATGGGATAGGCAGGCACCACAAGGTCCGTGGAATCGATTGGTGGCAGCACTTGGACGGGCTTTATCGT
CGTCGGTCA
>chr6B_1
GGATTATGATAATGTCAATTACAAGCTGGACAGCCATTGTTTGACCGCGGCGAGGCCGAAGACCGGCATTCGCC------
-ACACGTCCGAGCAAC---TAGCACGCTTCCAAACAAGGAAGAATCACTGCTGGGTGCTGGCACACCGACGCTCCTGACT
CCTGAGATTCTTCTCCCCCCATGAGCGCCGCACGCACGCGTCCATGCCCTCCGATCAGCATTGGGACTTGTGATCTATCC
TCCCAAGATCGCATAGCAAATCAACGGCCCGGCCTTCTTATCCTGGGCCTGGAGCTGACAT------AGAAAAA------
CAAAACAATAGTTCGTTCCAGAACGATCCCGTGCTCTCAGTGAAAAGGTTTGAACAGTTGTACAGTGGCATGCAGTCAGT
-ATGCTGTGGCGGTCTTTCAAGACGTCGCCAGGATTCCAAGTTTCAGATGCTGCCGTAACTCGAGAGTCAAGTTCCCAGT
TTCAG-----GTAATGACAGATGAGTGGCTGGCCTTCAAAGCATGACTACGAAAAGCCATGACCAACCCTTACGTTTCCT
ATGGTTCGAGTAAACCCACATGCCCACATAGATACGTGTGGCCATGCCGACATTATTT-TTACTGAAATGCCGACATTAG
TGTACTCAGTATACTT-----CCCCAAAATATTCTAGGAAAAGCTACCACTACTACTGTA---TTTCACCTATGGCGCTG
ATCCATTGTTCA-------CTGGTGGAGAAAACAGCTCGCCATGCATCTCAATCATCACCG-------TTTTCTACAGGC
GGTGCTAAACAATCGCCGCGCACATCCATCTACCCAAAGCTCCATCCCAAAGCAGCTCCCCATCCTCTCCTCTCCTCTC-
----TATATAACCCATCCAAATCCACCATCACCTCCACACCCAG----TCACCCGTAACAGTGCCCCGTTTCTTCAGCTC
ACACGCCAAGACCAGACACCACCACCACCATCATCACCACCTTTTAAAAGCCTCCCTCGCCACACAGCAGCGAAGCCAGT
CCACGACGATCGAGCT---------------------ATGGCATGCGTTAACATGTACAACCCGGACGGCGGCGCGGTGG
CGTTCGGCGGCGGGCAGCCGGGCCCGCGCATCTCCTTCTCCAGCGACTTCTCCATGGAGCCGCCGCCGCCGGTGCAGAAC
CGCGCCATGGGCCTGCGGTGCCAGGAGGAGGACCAGAACTTCGAGTTCTCCGTGGGCAGCCACCCCATGATGGCCGCCGA
CCAGCTCTTCTCCAAGGGCAGGATCCTCCCCTTCAAGGTCGAGGGGGGATGCCCGGCCTCCACGCTCCGCGACGAGCTCC
GTGCTGGCCCCGCCGACGACGACAGGGCATCCA---CG---CCCAAGGGGTCCAGCCGGTGGAGGGAGATGCTCGGCCTC
CGGAAGTCGCTCTGCGTCGGCGGCGGCGTCGCCAGTAAT---GCCGCGGCCGCCAAGAAGAGCGACAAGGTCGTCGCCGT
CGACGCCGACGCCAAGATAGCCACCGACATGGCCGCGCCCAAGCAGGTCCGTCCGCTGGTCATCTCCATGTAGTAATCTT
TGCAGTCCGCGTTAGCCACGTAGTACAGCATAGTAGTACTACCAGTACGCAATTAATTA--------ATTACAATTAGAG
CTGTTGGATGAAGTGATAGGTTGTCTCATTACAGATGGTTTGACTCATTGCAGGAGCCATGAGAGGTGACCGGCCGATGG
GGACGACGGCGACATGATCGGAAACTTCCTTCTTCCTCGCCATCGCTCGTGCCATGATCACCGGTCCTCTCTCATCGTGC
TCGTCAGT----CGTTTTGGGTGGCCTGATGGCCTGCGTGCTAGCTAGCTAG-----ATGGACAGTGTCCATGTCCATGT
CCATGTGTGTGCATGTGCTGAAGAGCAAACAATTCTGTAATTTCACTTTTTTTTCCTCTCCTTCTTTCATAAGTGATCCG
CTCTCGTTCTCTAGCTAGCAGCTGTCCGTCCACTAGATCCGAT------CCCCATCACCTCACACTTCTCTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCCAAGCTTTGTTTTTTCCTCCACCACCATCTCGCTCTGCCTGCCTGCCCATGGCCGGCC
TGTACATAATGCTTGTGTGTAGATGGGAAATTTATGGTGCAATGATTAGCCTTTGCCAGACGGCCAGATCTGTGGCGACA
TGAGCTGAGCCCTTGCTGGCCTTTGTTGTAGGGATCATGCAACAGTTCGCTCCTTTGTCACCTTGCTCCGCTGTGCACCA
CATGCATGCTTCCTCCTCCTCCTCCGTCTGCCCACGCGATGTGCCCGGCCGCATGTGGGTTTATATATAAAGGCAGACAG
GCGCCACAGAGCCGGCGTGTGCGATCGAGCGAGAGAG------AGAGAGACGGAGATTGATGAAGGG-------------
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----------------------------------------------------------------------------AACA
TGTCTTCTGCACCGGATGCATCATCATCGTCCTGGCCGGCTAGATCGGTGTTA---GTACTACCAATCTTATTGTATTGG
TCCGTACGTGAGCTGTGAGCAAATGGTGCTCGGGTTTGCACTTTGCAGGAGAAAATGGATA--------GTGGGACGGCT
ATGCTAACGTTGCTTTAGCGCGTTTCGTGGGTGCACTGTCTCCCCC-GTAGGTTGGCAGCCGGCGGTCGTAGTGGATTTG
TATAAGAGGATAGCAGGATAAGCAAGCACCACAAGGTCCGTGGAATCAATTGCTGGCAGCACTTTGACGGGCTTTATCGT
CGTCGGTCA
>chr6A_13
------------TGCCAATCACAAGCTGGACAGCCATTGTTTGACCGCGGCGAGGCCGAGGACCGGCATTCGCCAGTCGC
CACACGTCCAAGCAACTAGTAGCACGCTTCCAAACAAGGAAGAATCGCTGCTGGGCGCTGGCACACCGACGCTCCTGACT
CGAGAGATTCTTCTCCCGCCATGAGCGCCGCACGCACGCGTCCATGCCCTCCGATCAGCATTGGGACTTGCGATCTATCG
TCCCAAGATCGCATAGCATATCAACAAA-CGGCCTTCTTATCCTGGGCCTGGAGCTGGCAT------GGAAAAACAAACA
CAAAACAACAGTTCGTTCCGGAACGATCCCGTGCTCTCAGTGAAAAAGTTTGAACAGTTGTACAGTGGCATGCAGTCAGT
CATGCTGTGGCG----------------CCAGGATTTCAAGTTTCAGATGCTGCCGTGACTCGAGAGTCAAGTTC-----
-------AATGTAGTGACAGGTAAGTGGCTGGCCTTCAAAGCATAACCACGAAAAGCCATGACCAACCCTTACGTTTCAT
ATGGTTCGAGTAAGCCCGCATGCCCGCTACGTAT----TGGCCATGCCGACATTATTT-TTACTGAAATGCCGACATTGT
TGCACTCGGTATACGTACTTCCCCCAAAAAAATCTAGGAAAAACTACCACTGCTGTATTTCGTTTTCACCTATGGCGCTG
ATCCATTGTTCA-------CCGGTGGAGAAAGCAGCTCGCCATGCATCTCAATCATCACCG-------TTCACTACAGGC
GGTGCCAAACAATTGCAGCGCACATCCATCTACCCAAAGCTCCACCACAAAGCAGCTCCCCTTCCTCTCCTCTCCTCTCC
TTTCTATATAACCCATCCAAATCCACCATCACCTCCACACCCAGTCAGTCACCCGTAACAGTGCCCCGTTTCTTCAGCTC
ACACGCCAAGACCAGACG---CCACCACCACCATCACCACCTTTTACAAGCCTCTCTCGCCACACAGCAGCGAAGCCAGC
CCACGACGATCCAGCT---------------------ATGGCATGCGTTAACATGTACAACCCGGACGGCGGCGCGGTGG
CGTTCGGCGGCGGGCAGCCGGGCCCGCGCATCTCCTTCTCCAGCGACTTCTCCATGGAGCCGCCGCCGCCGGTGCAGAAC
CGGGCCATGGGCCTGCGGTGCCAGGAGGAGGACCAGAACTTCGAGTTCTCCGTGGGCAGCCACCCCATGATGGCCGCCGA
CCAGCTCTTCTCCAAGGGCCGGATCCTCCCCTTCAAGGTCGAGGGCGGCCGCCCGCCCTCCACGCTCCGCGACGAGCTCC
GTGGTGGCGCCGCCGACGAGGAGAGGGCGTCCA---CGACGCCCAAGGGGTCCAGCCGGTGGAGGGAGATGCTCGGCCTC
CGGAAGTCGCTCTGCGTCGGCGGCGGCGTCGCCAGTAAT---GCCGCGGCCGCCAAGAAGAGCGACAAGGTCGTCGCCGT
CGACGCCGACGCCAAGATAGCCACCGACATGGCCGCGCCCAAGCAGGTCCGTCCACTCGCTGGTC----------ATCTT
TCCAGTCCTCGTTAGCCACGTAGTACAGCATAGTACCACT---AGTACGCAATTAATTA--------ATTA-----AGAG
CTGTTGGATGAAGTGATAGGATGTCTCATTACAGATGGTTTGACCCATTGCAGGAGCTATGAGAGGTGACCGGCCGATGG
GGACGACGGCGACATGATCGGAAACCTCCTTCTTCCTCGCCATCGCTCGCGCCATGTTCACCGGTCTTCTCTCATCGTGC
TCGTCAGT----CGTTTTGGGTGGCCCGATTGCCTGCGTGCTAGCTAGCTACTCTACATGGCCAG------TGTCCATGT
CCATGTGTGTGCATGTGTTGAAGAGCAAACAATTCTGTAATTTCACTTCTTTTTCCCCTCCTT---TCATAAGTGACCCG
CTCTCGATCTCTAGCTAGCAGCTGTCCACTACCACTA---GCTAGATCCCCCCATCACCTCAC-----------------
-------TTCTTCTTGTTCTTCCAAGCTTTGTTTTTTCCTCCACCACCATCCGGCTCTGCCTGCCCGCCCATGGCCGGCC
TGTACATAACGCTTGTGTGTAGATGGGAAATTTATGGTGCAATGATTAGCTCTCGCCAGGCGGCCAGATCTGTGGCGACA
CGAGCTGAGCCCTTGCTGGCCTTTGTTGTAGGGATCATGCAACAGTGCGCTCCCTTGTCACCTTGCTCCGCTGCGCACCA
CATGCACGCTTCCTCCTCCTCTTCCT-----CCACGCGATGTGCCCGGCCGCATGTGGGTTTATATATAAAGGCAGACAG
GCGCCGCAGAGCCGGCGCGTGCGAGCGAG--------------------ACGAAGATCGATCGAGCCATCGAGGGAACAT
GTCCTCTGCACGTTTTGAACCTTTGCAGCGTTTTGGATGCCGGTCGTGGACCGAACGTTTATTGTTTTGTTTTCAGTTGT
ATCCCGTTTAAACCTGATGCCTGAGGGCTTTATTATTAATTTAAAGCCGGACGTTTCTAGCGTCTCCGTTCCAAAAAACA
TGTCCTCTGCACCGGATGCATCATCATCGTCCTGGCCGGCTAGATCGGTGTTAGTAGTACCACTGATCTTATTGTATTGG
CCCGTACGTGAGC-------AAATGGTGCTCGGCTTTGCGCTTCGCGGGAGAAAATCAATGGTGGGACGGCTATGG----
----TAGCGTTGCTTTAGCGCGTTTCGTGGGCGCACTGTCTCCCCCCGTAGGCGGGCAGCCGGCGGTCGTAGTGGATTTG
TATAAGAT------------------------------------------------------------------------
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>SNPs
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--------------------------------------------------------S-S---------------------
--------------S--S-------------------------------------------SSSSSS-----S-------
------------S----------------S----------------------------------------------S---
---------------------------S---S-S-------------------------------------------S--
-----SS-------------------------------------------------------------------------
-------------------------------------S--------------------S---------------------
-------------------------------------S--------------S------------------S-S------
------------SSSSSSS------------------------------------------SSSSSSS------------
------------------S----------------------S-------------------S--S---------------
--------S-----------------------------S-S----S----------------------------------
---------------------------------S------------------S-S-SS-SSSSS--------S-S-----
---------S-----SSSSSSSSSSSSSSSSSSSSSS-----------S-------------------------------
-------------------S--S---------------------------------------------------------
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----S----------------------------SSS--------------------------------------------
---------------------------------------SSS--------------------------------------
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--------S---------S----------------------------------------SSSSSSSS-------------
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----SS--------------S-----S-----------------------S-----------------------------
-S---SS-SSSS--------------------------------------------------------------------
-------------------------------------------------------S------S-----------------
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-----------S--------------------------------------------------------------------
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----------------------------------------------------------------------------S---
--------------S------S-------S--------------------------------------------------
---------------------------------S---SSSSSS-------------------------------------
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------------S------------S---------------------------------S--------------------
-------------------------------------------------------------------SS-----------
-------------------------------------------------------S---SS--S----------------
------------SSS-----S---S----------------------S----S-----------S---------------
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>forward_734
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--------------------------------------------------------------------------GCGCTG
ATCCATTGTTCACC------------------------------------------------------------------
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>reverse_2317
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----------------------------------------------------------------------------GCCA
CATGCATGCTTCCTTC----------------------------------------------------------------
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