>input_sequence_73028
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-------------------------------------------------CAACTCA----------ACAGCCTCTCCGCT
CTCCA--------------CACCATAGCCCAAGCGTTCGCTTCCCATCGCGTCCCATCTCCTCTCTGAACCAGCAATCAA
-----------CAACAACAGCCAGATGGCTCGCTTCGCCGTGGTCGCCGCCGTCATCGCGCTCCTCGCCGTCGCCGCCGC
CGCGCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCGCCGGCCACCGCCCCTGCGC
CGGTCGCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCGCCCCCGGCCCCGCCCACCGACGC----------
--TCCCTCCGCGATGACGCCCTCCGCGGTCTCCGCCACGCCCACCGGT------------GCCCCCACCGGCGCCCCCGC
GAGCTCCGCCGTGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCAGCCGCCATCATGTTCTAGATGT
GGCGAGGGTCCT-GAGCTGATCTTCGACCTGCCGCCGCCGTGGGGCTCTGAGTCTGATCCAACGTTGTTTATACTCCGAC
GAGATTCTTTTTCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCGA
GATTATCATCATCAATAGAATTCTTTCATTTGT-----------------------------------------------
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>chr4A_1_TraesCS4A01G404800
TATGGGGCCTTTTATACTAGTTACTAACGACGGAAAAAAGTGGCGGCAATTTGTGACGGGCCACGGGGCCAGCACGGGAG
ACATGGGGAAGGTGAAACATCCCTCCCACGCGAGCTGTTTAGGGATGTTGTGCGCTCCAAACCAACGTCAACAATCTACA
AATTGGAGGTTAGTGGGCTTGATATAAAGCGCCCTGCATAATTTTTGATGACTCTGCTAGGGTGATTTTGTTCGATCCAA
GATCATCTTATCAATGGTTGTTACGGTGATCACGCCCATATAGCGACTCAGTCAGAGTTACTCACTCAAAAACAGAAATA
GCGCGTCGGAGAAGAGCAGAGGAGAGGAGGCGTACGGGCGACGAGTCTGACCAAACCCGATCGACCGATGAGTTGGTGGA
GTCAAATCATTTAGGGTCTGTCTAGGACACATCCAGATGTGGCATAACTATGTCACATCTAAGCTGATTTCCACTCTGTT
TGTGGTCTATTTTTTTGTCCTAGTTTTTTTTTATTTCTTGTTGCTGCATTATATATTTGTGGGAGCTTAGATGTGACATT
CTTAAAAAACATCTAGATGTGAATTAGACAAACTGAATCATTTACGTTCTCTATCACCAATTTGGCAAAGCCAAACTTCT
ACTCCTCACCAATCTGCCAGACCACCGACCACGAACCACACGTGATACAGCCGCCGACTCGAAGCCTCGGTAGAAAATTG
TACACACACGTCCATCCAATCTTCACCTTCTACACAACGTGTCCCCATTAACCACCGGGACGACGCGGTGCCGCGGCGCG
AAGAGTTCAGCTTTGCGCGGCGCCGTCCCCGCGAAGACAGACTGCTCTGCTCTGCT--------CTGGTCTCACGCGTCG
TCGCTGCCCGTGACGACAGCCCGAGGCTTCAACGTTCCAGCTGTTGTTGCCTTGCCTGCCTCGACCGACGTTTGGAAAAT
CGCCTTCCCGCTATAAATACCAGCCTCCTCG-CCCCGTCCCAGTCCTCACAACTCA----------ACAGCCTCTCCGCT
CTCCA--------------CACCATAGCCCAAGCGTTCGCTTCCCATCGCGTCCCATCTCCTCTCTGAACCAGCAATCAA
-----------CAACAACAGCCAGATGGCTCGCTTCGCCGTGGTCGCCGCCGTCATCGCGCTCCTCGCCGTCGCCGCCGC
CGCGCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCGCCGGCCACCGCCCCTGCGC
CGGTCGCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCGCCCCCGGCCCCGCCCACCGACGC----------
--TCCCTCCGCGATGACGCCCTCCGCGGTCTCCGCCACGCCCACCGGT------------GCCCCCACCGGCGCCCCCGC
GAGCTCCGCCGTGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCAGCCGCCATCATGTTCTAGATGT
GGCGAGGGTCCT-GAGCTGATCTTCGACCTGCCGCCGCCGTGGGGCTCTGAGTCTGATCCAACGTTGTTTATACTCCGAC
GAGATTCTTTTTCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCGA
GATTATCATCATCAATAGAATTCTTTCATTTGTTACCTGATTGATCTCCGCTCCTGGATGTACGAATCTGTTCTCTATTA
ATTAACCCCGCAAAAAAAAAAAAACACAACCGCGAAAAATGGCAAGAAACCCTAATCTGCAACGCTACTCGACTACGCGC
TCTGTTCGAGCAGTTTGCTCTGCCGTGTGGAATTTGCTGAATTCTCACCCATCA--TCCGGATCAGGGGCCTACCTCCTG
TCT-----TGAATC-TTGATGCGGCGTGGTACGGGGATCGAAAGGCTATAGCAGGACGACAACGGTAAACCGATGAGAGC
GGCCGTTGCTCGTTGCGCTGTCGATTTAGTCCGGACGGGAGGACCAAAGCCATGTGCGGAGCTCTGGTTTCGTCTCGATC
GGCGCGGGCGAGGTCACATGGCCGCATGCGCCGTTGCCTGCTCGCTTTTGTTTTTCATC--CATCGTCTCTTCTTTTCTT
CGCGTCCTGATGCCATGCCATGCCATGTGACCTGTTTTGGTCTGCGCGCTTGAGCTGTAAGCTAGCTGGGA---------
--------------------------------ATTTTGAGAAGATATCTGTAAAGGCTGAAATGTGCACAACACGCTTCT
GCTTAGGCTT-CGACGTAAATTGATTTCTGCGCGTCGG-------------------------ATCCTTATCTTATCTAT
TTTGGTAATAATT---GTTTTCCTTTCCGGAGGATAGA------------------------------------------
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--------------------------------------------------------GGAATACCACTACCTCTTTCTGTG
TACAGATTTCAGTTTTTTTTTGCTGGAAACTGT---TTTTTTATGAACTGTTTTTCTTTTAGGCAGATGCTCGAAACTAC
TACGTAGTAAACACTTCTAATTTTTTTTCAGAGTTTGCTTTTTTTATTACGCATAATTTTATTTGAACTTGACAAAATTA
CAGATACAATGCTTGCCATCATGGATGTAAGGAATTACAAACTAACTCGTATAACTATGATTTAGAGTGAAAATTTCTCG
GAATCATCTTCTCCATGGTAACAAATAGTGCCATGCCTTCAATAAAATGAAGGCAATCTAATCAGAGCAGTGACGCCGTC
ACTCATATACCTTG
>chr4B_205
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--------------------------------------------TTGACGACTCTGCCAGAGTAGTTTTTTCCGACCAAA
GATTATCTTATCAATGGTTATTATGGTGATCAAGACCATATAGCGGCTCAGTCAAAGTTGCTCAATC-AAAACAGAAATA
GCGCGTCGGAGAAGAGCAGAGCAGAGGAGTCGTATGGGCGACGAGTTAC--CAAACT-GATCGACTGATGAGTCGGTGGA
GTCAAATCATTTG-------------------------------------------------------------------
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--------------------------------------------CGTTTTCTATCATGAATTTGGCAAAGCCGAACTTCT
ACTCT---CCAATCTGCTAGACCACCGACTACTAA----------TACAGCAGCCGACTCGAAGTCTCGGTACAAAATTG
TACACGCCGATCCTT----------------------------CCGATTAGCCACCGG---GACGCGGTGCCGAGGCCCG
GAGAGTTCAACTTTGCACGGCGCCGTCCCCGCGAAGACAGACTGCTCTGG-----T--------CTGGTCTGACGCGTCG
TCGCTGCCCATGACGCCAGCCCGAGGCTTGAACGTTCCAGCTGTTG--------CCTACCTCAACCGACGTTTAGAAAAT
CGCCTTCCCGCTATAAATACCAGGCTCCTCG-CCCGTCCCAAT---CCACAACTCA----------ACAGCCTCTCCACT
CTCCACTCTCCACTCTCCACACCAGAGCCCAAGCATTCGCTT--CCCGTCGTCTCCTCTCCTCTCTCGATCTCAGTGAAG
TTTTCCGCAACCAACAGCAGCCAGATGGCTCGTTTCGCCGTGCTCGCGGCCATCATCGCGGTCCTCGCCGTCGCCGCCAC
CGCTCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCCCCGGCCACCGCCCCTGCGC
CGGTCGCCACCCCGCCCACCGCCGCGTCGCCATCCCCGATGGCCTCGCCCCCGGCCCCGCCCACCGACGCGCCGACCGAC
GCTCCCTCGGCGATGACGCCGTCCGCAGTCTCCGCCACACCCACCGGC------------GCCCCCACCAGCGCCCCCGC
GAGCTCCGCCGTGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCCGCCGCCATCATGTTCTAGATGG
ACGGAGGATCGTCGAGCTGATCTTCGATGTGCCGCCGCCGTGTGGCTCCGAGTCTGTCCCACCGTTGTTTATACTCCGAC
GAGATTCTTTTTCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCCA
GATTATTATCATTAATAGAATTCTTTCATTTGTTACCTGATTCATCTCCGCTCCTGGACGCATGCATATGTTCTCCATTA
ACTCGGTCCGATT--------AACCACAACCGC-AAAAATGGCAAGAAACCCTAATCTGCAACGTTACACGACTACGTGC
TCTGTTCGAGCAGTTTGCTCTGCCGTGTGGAACTGCGAATTCCCATCCCACCCATCTACGGATCAGGGGCCTACCTCTCT
CGGTGACGTGAATCTGTGATGCGGCGTGGTACGGGGATCAAAAAGCTAAGCTAGGACGACAACGGTAAACCGATGAGAGT
TGCCGTTGC--GTTGCGTTCTCGATTG-----GGTCGGCAGGACCAAAGCCATGTGCAGAGCTCTGTTTTCTTCTCGATC
GGCGCAGGCGAGGTCACATGGTCGCATGCGCCGTTGCCTGCTTGCTTTTGTTTTTCATC--CATCATCTCTTCTTTTCTT
TGCGTCCTGATGCCATGCCATG-----TGACCTGTTTTGGTCTGCGCGCTTCAGCTGCGAGCTAGCTGGAAATTT-----
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>chr4D_246
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-----TCTTATCAATGGTTATTATGGTGATCAAAACCATATAGCGACTCGGTCAGAGTTACTCAATC-AAAGCAGAAGTA
GCGCGTCGGAGAAGAGCAGAGGAGAGGAGGCGTATGGGCGACGAGTCTGAGCAAACT-GACCGACTAATGAGTCGGCGGA
GTCAAATCATTT--------------------------------------------------------------------
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-------------------------------------------ACGTTTTCTATCACCAATTTGGCAAAGCCAAACTTCT
ACTACTCCCCAATCTGCTAGACCACCGACTAGGAACCACACGTGATTCAGCAGCCAACTCGAAGTCTCGGTAGAAATTTG
TACACGGCG----ATCCAATCTTCACCTTCTACACAAAGTGTCCCGATTAACGACCGGGACGACGCGGTGCCGCGGCCCG
AAGAGTTCAACTTTGCACGGCGCCGTCCTCGCGAAGACAGACTGCTCTGG-----T--------CTGGTCTCACGCGTCG
TCGCTGCCCATGACGCCAGCCCGAGGCTTGAACGTTCCAGCTGTTG--------CCTACCTCAACCGACGTTTAGAAAAT
CGCCTTCCCGCTATAAATAGCAGCCTCCTCGCCCCGTCCCAAT---CCACAACTCA----------ACAGCCTCTCCACT
CTCCA--------------CACCAGAGCCCAAGCGTTCGCTATACCCATCGTCCCATCTCCTCTCTCGATCTCAGTGAAG
TTTTCCGCAACCAACAGCAGCCAGATGGCTCGCTTCGCCGTGGTCGCCGCCGTCATCGCGGTCCTCGCCGTCGCCGCCGC
CGCTCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCCCCGGCCACCGCCCCTGCGC
CGGTCGCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCTCCCCCGGCCCCGCCCACCGACGCGCCGACCGAC
GCTCCCTCGGCGATGACGCCGTCCGCGGTCTCCGCCACGCCCACCGGC------------GCCCCCACCGCCACCCCCGC
GAGCTCCGCCGTGTACTCATCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCCGCCGCCATCATGTTCTAGATGG
ACGGAGGATCGTCGAGCTGACCTTCGATGTGCCGCCGCCGTGGATCTTTGAGTCTGTCCAACCGTTGTTTATACTCCGAC
GAGATTCTTTTTCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACGCCGCCGTGTTGCGCCACGCATGCGCCA
GATTATTGTCATTAATAGAATTCTTTCATTTGTTACCTTATTGATCTCCGCTCCTCGATGTATGCGTCTGTTCTCCATTA
ACTTGTTCTGATT--------AACAACAACCAC-AAAATTGGCAAGAAACCCTAATGTCCATTGTTACTCGACTACGTGC
TCTGTTCGAGCAGTTTCCTCGGCCGTGTGGAACTTGACGAAGTCTCACCTATCA--TACGGATCAGGGGCCTACCTC--T
CGGTGACGTGAATC-GTGCTGCGGCGTGCTACGGGGATCAAAAAGCTAAGCTAGGACGACAACGGTAAACCGATGAGAGT
TGCCGTTGCCCGTTGCGTTCTCGATTG-----GGTCGGCAGGACCAAAGCCATGTGCAGAGCTCTGTTTTCTTCTCGATC
GGCGCGGGCGAAGTCACATGGTCGCATGCGCCGTTGCCTGCTTGCTTTTGTTTTTCATCTCCATCGTCTCTTCTTTTCTT
TGCGTCCTGATGCCATGCCATG-----TGACCTGTTTTGGTCTGCGCGCTTGAGCTGTAAGCTAGCTGGGAATTTCTGGA
CTCCAATAGCGAGAATGCTTTTGCTTTAGCCCATTTTGGGAAGATAT-------------AATCTGCAGAACACGCTTCT
GCTTAGGCCACCGACGCAAATTGATTTCTGCGCGTCTGCGGTGTAATTTGTTGCGGCAAGGGTATCCTTATCTTATCTAT
TTTGGTAATAATAATAGTTTTCCTTTCCGGAGGATGGAGGAATACCACGAGTGGGGCGTTTTGGTGCCAGGCTCATCTGC
ACCCGGTTAGAAAAAAATTCATAAAAAATTCAAAACAAAATTAAAAAAATTTAAATAAAATTTGTGTGGTAGACAATTTG
ATGCGTGATGCCCGCTCCAAATTTCAAGTCATTTGGACATATGATCAGCTCTCAGCAAAAAGACAAATCGAGCCAAAACA
GTACATGAACAGTAAACATTTTTACAGACCCCTAATTTGTTTTTTTGCTGAGAGCTTCTCATATGTCCAAATGACTTGAA
ATTTGGAGCGGGCCTCGCGTATCAAATTGTCTACCACACAAATTTTATTTGGAACTTCTTGAATTTTTTTAATATTGGTT
TTGATTTTTTTCGTCGGCGCGGGTGCAGATAAACTCGGGTGCAGAAATGGATTTTCGGAATACCACTACCTCTTTCTGTG
TACAGATTTCAGTTT------GCTGGAAACTGTATTTTTTGTATGAACTGTTCTTTTTTTAAGTAGATGCCGGAAA----
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>chr4B_780
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-----------------------------------------------------------ACGACGCGGTGCCGCTGCGTG
AAGGGATCAACTTTGCGCGGCGCCGTCCCCGCGCGCCAAGATCTCCACCTGTAACGCTGACAGCCTGCTCTCTCGCGTCG
TTTCTGCCCATGACGACAGCCCGAGTCTCGAGCGTTACAGCTGTTG--------CCTACCTTAACCGACATTTTAGAATC
G------CCTCTATAAATACCAGCCTCC------CATCCCAAT---TCACAACTCGCAGCTCAAGTACAGCTTCTACACA
----------------------CAGAGCCTAAG-----------CATCCCATCTCATCTCCTCTCCAAATCACCGT----
-----------CAGCAGCTACCAGATGGCTCGCTTCGCCGTGCTCGCCGCCACCATCGCCCTCCTCGCCGTCGCCACCGC
CGCGCAGGGTCCCATACCGGCGCCCAGGATGGCACCGCTCCCTGCACCTCCGGCGAGGTCTCCGGCAACCGCCCCTGCGC
CGGTCTCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCTCCGCCGGCCCCGCCCACCGACGCGCCGACCGAC
GCTCCCTCCGCGATGACACCCTCCACGGTCTCCGCCACGCCCTCCGGCGCCCCCGTCGGTGCCCCCACCGGCACTCCCGC
GAGCTCTGCCGTGTACTCGTCCGCCGCCAGCTTCGTTGCAGTGGCCGGAGCGGTCGCCGCCGCCATCGTTTTCTAGA---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------S--S--SS----S-S---S-S--
---S---------------S---S--------S-S-----------------------------S--S------------
----------------------------------S---------------S-----SS-------S-------S------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------------------------
-------S---------S-----------S---------------------S------------S---------------
-----S-SSS---------------------------S-------S----------------------------------
---------S---------------------------------------SSSSS--------------------------
---------S-------------------S----------------SSSSSSSS---S----S----------S------
-----------------------------------SSS--S-SSSS-------------------------------S--
------------------------S-----------------SS----S-----------------S--S--S-SSSS-S
----------------S---------------------------------------------------------------
------------------------------------------------------------S-------------------
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-----------------------------------------------S--------------------------------
---------------------------------------------------------S---------------------S
SSS----S--S----------------SS---------------------------SS---S------------------
------------------------------------------------------------------------------S-
------S-----S-------------------------------------------------S-S----------S----
-S-SSSS---SSSSSSSSSSS--S---------S------------------------------S------------S--
--------------------------------S---SS---S-------S-------S-------------------SSS
SSS------------S-----------------------S---S----SSSS---------------------------S
S--------S-------S-S------SSSSSS--S---S------------------S--------S----S--------
---------------------S--------------------S-------------------------------------
S---------------------SSSSS-----------------------------------------------------
--------------------------------------S--------SSSSSSSSSSSSS---S----S-----------
--------SS------S-------------------S-------------------------------------------
------------S----------------------S--------------------------------------------
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---------------SSSSSS-------------------S-----------S--S-----S-S------SS----SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_57
-------------------------------------AAGTGGCGGCAATTTGTGAC-----------------------
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>reverse_1825
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----------------------------------------------------------------CTACTCGACTACGCGC
TCTG----------------------------------------------------------------------------
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