>input_sequence_73027
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-----------------------ATGGCGATGGCGGCGTCGTGGTGGGCGCTGCTGACGGCGGCGGCGGTCGTGGCGGCG
GCGGCGGGGTGCGGCGAGGCGGCGCCGACGGCGGCGGCGGAGGCGGCGCACGACGTGCTGCAGACACACGGGCTCCCGCG
CGGGCTGCTCCCCGCGGGGATCGCGGCGTTCTCGCACGACCCGGCCACCGGCCGGTTCGAGGCGGTCCTGGAGTCCCCCT
GCACCTCGCGCACCGAGGTCGGCCTGCGGTACAACGTAACCGTCGCCGGGCAGATCACGTACGGCCGGATCGCCGAGCTA
TCCGGCGTGGACGCGCAGGACCTCTTCCTCTGGTTCGCCGTGCGCAGCATCCGCGTCGACGTTCCCTCGTCCGGCGTCAT
CTACTTCGATGTGGGCGTGGTCTACAAGCACTTCCCGCTGTCGTTCTTCGAGGCCCCGCCGCCGTGCGTGCCCACCTCGC
GCATCCTCCTGCAGCCGCATCAGGTAACGCCGTCGCGCCATCCATGATTTTCCCTCCCCATCGACACTCCCGTTT---GT
AGTAGTACAGTTGCAACCTCCTAACAAGCTTCTTGAATTGGTCTTCTCTGTCGCCGCAGATTAGGGACGGCGGATCGGTG
GCGGAAGACGGCGCCGCTTTGCAACAATGA--------------------------------------------------
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>chr3D_1_TraesCS3D01G414200
CCGAAAAATGGGCGACGGCGGCGATGGGGCAGGCGAGGGTTTGCTGTCGATATGGGTGGAAGAGGATGGCCAATGTGCCA
CCGACTAGCACGCCAGGGGGAGGAGAAGACACAAATTAGGCTGAGAATGGGCGGCAGGCGGACTAAAAGCGGATGTGCGT
CCGTTTCGGCCGGCGCGTTGGCCCGACTTTTCCGTCCGCGCCGACTCAAACGGACGCGCGAGGATAAAATGGATCGGTGC
GTTGGAGTTGCTCTAACAAACCTTTTTTTCTAGAGAGCATGCAAAATTTATATCGTAACTTTATATACAAGGAAAGTCAA
TTATCTTCTTGAAGCAGCG-TTGCTCAACAATGTTGCGGACAATTTATTTCGGATTTAATTTTTTGG-CTTTAGTACGTG
AAAAAACGATTAATCATTGGCCGAAACAAAAGATGCCGATCCAGGCCCCGACTGGCACGCAACGCAAGCATTCCACGTGA
CCCTCC------------------C--GCGGAATTTGTGGAACGCTCCCTTGTGCCACGACGGAGTTCCCTGTAGATCCC
TGCAACATACTGTACACT---CATGGGCAAACCGTGACCGGATCCTCCTCCGCATGGCATCGATCACACCAGCTCAAACA
CGATAGATAGCGGGTAACAGTAGTAGCGCCGAGAACAACTGAAAAGCAGTTGCCGA-GCAGCGAGATGGCGGAAGGAATT
AAAACCGCTGCGCCCGCGAAACACGCACCCCAAATCGCGAGTCCACCAGCTACTC---CACGCTGTTATCGCGCGGCTTA
ATTAAAAACGGGGAGGAGGGGCGGCCAATTAGGCGTAACAA--ATTAAATAAAACGCTGGCAGGTGGGCCCG--------
-----GCCGG----GCCGCGTCCATCCCCCCGTAGATTATTTCACTCGGCCTCCCTCCCCTCCCCTCGGCCCTTCTTCGG
TTACCTCAATTATTGCGCCTT-----CCCATCCGCCCCTCATCTCCTCCCCAT----------CTCCATTCCTCCACCCC
TCCACGGCGGCTCTCCATTGGTAATGGCGATGGCGGCGTCGTGGTGGGCGCTGCTGACGGCGGCGGCGGTCGTGGCGGCG
GCGGCGGGGTGCGGCGAGGCGGCGCCGACGGCGGCGGCGGAGGCGGCGCACGACGTGCTGCAGACACACGGGCTCCCGCG
CGGGCTGCTCCCCGCGGGGATCGCGGCGTTCTCGCACGACCCGGCCACCGGCCGGTTCGAGGCGGTCCTGGAGTCCCCCT
GCACCTCGCGCACCGAGGTCGGCCTGCGGTACAACGTAACCGTCGCCGGGCAGATCACGTACGGCCGGATCGCCGAGCTA
TCCGGCGTGGACGCGCAGGACCTCTTCCTCTGGTTCGCCGTGCGCAGCATCCGCGTCGACGTTCCCTCGTCCGGCGTCAT
CTACTTCGATGTGGGCGTGGTCTACAAGCACTTCCCGCTGTCGTTCTTCGAGGCCCCGCCGCCGTGCGTGCCCACCTCGC
GCATCCTCCTGCAGCCGCATCAGGTAACGCCGTCGCGCCATCCATGATTTTCCCTCCCCATCGACACTCCCGTTT---GT
AGTAGTACAGTTGCAACCTCCTAACAAGCTTCTTGAATTGGTCTTCTCTGTCGCCGCAGATTAGGGACGGCGGATCGGTG
GCGGAAGACGGCGCCGCTTTGCAACAATGATGGGA---------TGATTTCATCGTGGAGGCGTGAACCAGAAATCGCAG
TTTTGAGAGGTGATCGGCCGGC-GGCGGGCGGACGGCCGGCTAGTGTGCAGATAGATAGGTGTGGTCATTCGTTTTGTCT
GCTCCTCGCCACCTCATCACTCTGTTC-----------------TTGTCCGCTGCGTGCCAAAGTAAATCGGCGGCCGGC
GGGAGCTGCCTGCGTGTACTTCTCCGGCGTA---TGGCCGATCGCCATATTTTCCTGGGTAATGGATGATGCATGT----
------AAAGTTTTTGTGTGATTAG------TGATCTTCGTTGGGTTCTGCATATTATTCTTGGAA--------------
GCGTCAGTGCCTTT-CTCCTCACTCCCTCGCTCTGTCAAATCCAACCGAACTGAACTGAATCGTCCCTTGGCGCTGTAGT
CTGTAGAGGGGAACGTGTCGTTGTTCCCTGTACTAGCGACTCTGTCGCTCGACCACTGGCATCCAATGTGATGGATCCGC
CGCGGCATCTCGTTGC----------------CATTCACCATGATCTGAAAGGGATCAGTCACGCCGCTC---AGTCAAT
CTAGCTCGGTTCGGTGTTTTTCTTTTTTAC-GCACGGTTGGTGCTGTTGACTGATGCAGTTCTGACATCCCGATTAAACT
G-ATAAAAAATACTACTAGCAAGTCTC--AATCGATCCCCGGG-----------------------------------AA
ACGGCAATCAATCAGCACAGCTCGACCGTTCCTCCTCCCTCGGAGATCGCGGTGGTTGTTGTACTA--------------
-----------------------------------AGTCCATGCAGTACAGTACGCGATCGCAAAGCGGGCACTGGCATC
TGGGCCA---------CTCAACAAGCCGGGTCCCGTGTCAGTGAGCGCGTGCGTACGCTCCCACGGGGCAGTGCTCGGGG
TTGGAAGCCGGAACGGGGCAACGGCGAGGGAAGCGA-GAT----GATGGGATAAAGCTGGAATACGGAGGGGGCGAG---
----GCAGGGGCATGTGCGACGGGTGGCAATGATGGGAAATGGACAAGTGTGTCCACTGCGGCGCGGCCAGCTGCCGCGG
CCGGGCTGGTGCAGTGGGT
>chr3B_304
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---------------------------------------------------------------TATAGAAGGGATGTCAA
TTATTTTTGA-AAGCTGTGTTTGATCAACAATGTTGGAAACAGTTTATTTCGGATTT-ATTTTTTGG-CTTTAGTACGTG
AAAAAATGACTAATCATTGGCCGAAACAAAAGATGCCGATCGAGGTCCCGATTGGCACGCAACGCAAGCATTGCACGTGA
CCATCACATCACACTTCCGCTCCTC--GCGGAATTTCCGGAACGCTCCC-TGTGCCACGACGGAGTTCCCTGTAGATTCC
TGCAACATACTGTATCCTCCGCATGGGCAAACCGTGACCGGATCCTCC---GCACGGCATCGATCAGACCAGCTGAAACA
CGATAGGCAG-------CAGTAGTGGCGCCGAGAACGACTCAAAAGCAGTTTGCTGGGCAGCGAGATGGCGGAAGGAATT
AACGGC-CTGCGCCCGCGAAACACGCACCCCAAATCGCGAGTCCACCAGCTGATGCGACACGCTGTTATCGCGCGGCTTA
ATTGAAAGCGGGGAGG---GGCGGCCAATTTGGCCTA------ATAAATTAAAACGCTGGCAGGTAGGCCCG--------
-----GCCGGACGGGCCGCGTCCAT--CCCCGTAGATTATTTCATTCGGCCTCCC---CCTCCCCTCGGCTG---TTCGG
TTACCTCAATTATTGCTAAGCGTCTCCCCATCCGCCCCTCATCTCCTCCCCATCCGCCCCCATCTCCCTTCCTCCACCCC
TCCACGGCGGCTCTCCATTGGTAATGGCGATGGCGGCGTCGTGGTGGGCGCTGCTGGCGGCGGCGGCGGTT---GTGGCG
GCGGCGGGGTGCGGCGAGGCGGCGCCCACGGCGGCGGCGGAGGCGGCGCACGACGTGCTGCAGACCCACGGCCTCCCGCG
CGGGCTGCTCCCTGCGGGGATCGCGGCGTTCTCGCACGACCCGGCCACCGGCCGGTTCGAGGCGGTCCTGGAGTCCCCCT
GCACGTCGCGCACCGAGGTCGGCCTGCGGTACAACATCACCGTGGCGGGGCAGATCAGCTATGGCCGGATCGCCGAGCTC
TCCGGGGTGGACGCTCAGGACCTATTTCTCTGGTTCGCCGTGCGCAGCATCCGCGTGGACGTGCCCTCCTCCGGCGTCAT
CTACTTCGATGTGGGCGTGGTCTACAAGCACTTCCCGCTGTCGTTCTTCGAGGCGCCGCCGCCGTGCGTGCCCACCCCGC
TCATCCTCCTGCAACCACATCAGGTAGCACCATCGCATCATCCATGATATCCCCTCCCCATCGATACTCCCGTTT---GT
AGTAGTACAGTTGCAACCTCCTAACAACCTTCTTGAATTGGTCTTCTCTGTCGCCGCAGATTAGGGGCGACGGATCGGTG
GTGGAAGACGGCGCCGCGTTGCAACAATGATGGGACGGATTCCATGATTTCATCGTGGAGACGCAAACCAGAAATCGCAG
TTTTGAGAGGTGATCGGCCGGCCGGCGGGCGGACGGCCGGCTAGTGTGCAGATAGATAGACGTGGTCATTCATTGTGTTT
GCTACTCGTCACCTCATCACTCTGTTCCT-----GTCGTCGTTCTTGTCCTCTGCG-GCCAAAGTCAATCGGCGGCCGGC
GGGAGCTGCCTGCGTGTACTCCTC---CGGCGTCCGGCCGACTGTCATATTTTTCACGGTAATGGATGATGTGTAGTGTA
TATGTTAAAAGTTTTTTGTG-----TGATCCTGATCTTCGTTGGGTTCTACATATTATTCCTCGAATCTAGGGTGATACA
GCGTCAGTGTCTTTTCTCCTCACTCCCTCACTCTGTCAAATCCAACCGAACTGAATAGTCCCTTTGCCA-----------
---------GGAACGTGTCGTGATTCCCTGTACTAGCGCCTCTATCGCCTGACCACTGGCATCCAGTGTGATGGATTCGC
CGCAGCATCTCGTTCC----------------CATTCACCATGATGTGAAAGGGATCAGTCACGAAGCAGTGTAGTCAAT
CTAGCTCGGTTCGTTTTCTTTTTCTTTTATGGGACGG-TGTTGTTGTTGACTTGTGCAATTCTAACATCCCGATTACTAT
GAAGAAATACTAGTACTAGCAAATTTATCCACCTTGGAGTGCTAGTATCTTAATGACCCGTCGTTGCGTGTGACGTGAAA
CCGGCAATCAATCAGCACA-CTCGTCCGTTCCTCCTCCCTCGGAGATCGCGGTGGTCGTACT--AACTGCCACGGTTAAC
TACTACTCGAGCCAAAAGCGCTCCGGCCAGCACACAGTCAATG-----CAGTACGCAATCGCAAAGGAGGCACTGGCACC
TGGGCCATAGTCGACACTCAGCACACCGGGCCCCGTGTCAGTGAGCGCGTGCGTACGCTCCCACGCGGCAGTGCTCCGGG
TTGGAAACCGGAACGGGGCAACGGCGAGGGAAGTGATGAT----GATGGGAT-AAGCTGGAATACGGAGGGGGCGACGGG
CGAAGCAGGGGCATGTGCGATGGGTGGCAATGATGGGAAATGGACAAGTGTGTCCACAGCGGCGCGGCCAGCTGCCGCGG
CCGGGCTGGTGCAGTGGGT
>chr3A_304
TATACTA-------------------------------------------------------------------------
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--------------------------------------------------------------------AGGAAAATCGAA
CTATCCCTTTGAAGCTGTGTTTACTCAACAATGTCGTAGACAGTTTATTTCGGATTT-ATTTTTTTGTCTTTAGTACGTG
AAAAAATGATTGATCGTTGGCCGAAACAAAAGATGCCGATCGAGGCCCCGACTGGCACGCAACGCAAGCACTCCACGTGA
CCATCACATCACCTCCTCGGCCCTACAGCGGAATTTGTGGAACGCTCCA-TGTGCCACGACGGAGCTCCCCGTAGATCCA
TGCAACATACTGTATCCTCGCATGGCA------------------------------CATTGATCAGACCAGCTCAAACA
CGATAGATAGCG----------------CCCAGAACAAATCAAAAACAGTTTGTTGGACAGCGAGATGGCGGAAGGAATT
AACGGC-CAGCGCCCGCGAAACACGCACCCCAAATCGCGAGTCCACCAGCTACTC---CGCGCTGTTATCGCGCGGCTTA
ATTAAAACGGC----GAGGGGCGGCCAATTTAACGTAAATTTGATTAAATAAAACGCTGGCAGGTGGGCCCGCTCGCTGC
GTCCGGCCGG----GCCGCCTCCATC-CCCCGTAGATTATTTCACTCCGCGTCCCGTCTCCTCGCC--------CTTCGG
TTACCTCAATTATTGCGAAGCCCGGTCCTCCTC-CCCCTCATCTTCTCCCCATCCGCCCCCATCTCCATTCCTCCTCCCC
TCCACGGCGGCTCTCCATTGGTAATGGCGATGGCGGCGTCGTGGTGGGCGCTGCTGATGGCGGTGGTGGCT---GCGGCG
GCGGCGGGGTGCGGCGAGGCGGCGCCGACGGCGGCGGCCGAGGCGGCGCACGACGTGCTGCAGTCCCACGGCCTCCCGCG
CGGGCTGCTCCCCGCCGGGATCGCGGCGTTCACGCACGACCCCGCCACCGGCCGGTTCGAGGCGGTCCTGGAGTCCCCCT
GCACGGCGCGCACCGAGGTTGGCCTGCGGTACAACGTGACCGTCGCCGGGCAGATCACGTACGGCCGGATCGCGGAGCTC
TCGGGTGTCGACGCGCAGGACCTCTTCCTCTGGTTCGCCGTGCGCAGCATCCGCGTTGACGTGCCCTCCTCCGGCGTCAT
CTACTTCGACGTCGGGGTCGTCTACAAGCACTTCCCTCTGTCGTTCTTCGAGGCCCCGCCGCCGTGCGTGCCCACCTCGC
TCATCCTCCTGCAACCACATCAGGTAACGCCATCGCATCATCCCTGATTTCCCCTCCATGCCGATACTCCTGTTTGTAGT
AGTAGTACAGTTGCAACCTCCTAACAACCGTCTTGAATTGGTCTTCTCTGTTCCCCTAGATTAGGGACGACGGATCAGTG
GTGGAAGACGGCGCCGCGTTGCAACAATGATGGGA---------TGATTTCATCGTGGAGGCGTGAACCAGAAATCGCAG
TTTTGAGAGGTGATCGGCCGGC-GGCGGGCAGACGGCCGGCTAGTGTGCAGATAGATAGATGTGGTCATTGGTTTTGTTT
GCTCCTCGCCACCTCATCACTCTGTTCCGTTCTCGTCATCGTTCTTGTCCGCTGCATGCTAAAGTCAATCGTCGGCCGGC
AGGAGCTGCCTGCGTGTACTACTCCGGCGGCGTCTGGTCGATTGTCATATTTTCCACGGTAATGGATGATGCT---TGTA
TATGTCAAAGATTTTGTGTGATCAATGATCCTGATCTCCCTTTAGTTCTGCATATTACTCATCGAATCCAGCGTGATACC
GCGCCAGTGCCTTT-CTCCTCACTCCCTCAGTCTGTCAAATCCAACTGAACTGAATCGTCCTTT------GCGCTGTAGT
CTGTAGAGGGGAACGTGTCGCTGTTCGCTGTACTAGCGCCTCTATCGCTTGACCACTGGCATCCAATGTGATGGATTCGC
AGCGGCATCTCATATTCTCGTTGCCATTCAGTCATTCACCATGATCTGGAAGTGATCAGCCACGCCGCTC---AGTCAAT
CAAGCTCGGTTCGGTGTTCTTCTTTTTCAATGCACGGTTGGTGCTGTTGACTGATGCAATTCTGACATCCCGATTAAACT
G-ATAAAAAATGCTACTCTAGCAAGTCTGAATCGATCCCCGGG-----------------------------------AA
ACGGCAATCAATCAGCACAGCTCGTCCGCTCCTCCTCCCTCGGAGATCGCGGTGGTCGTTGTACAACTGCCATGGTTAAT
TAG---TCCAGCGAAAAGCGCTCCCGCAAACACACAGTCCATGCAGTACAGTACACGATCGCAAAGCGGGCACTGGCATC
TGGGCCA---------CTCAGCAAGCCGGGCCCCGTGTCAGCGAGCGCGTGCGTACGCTCCCACGCGGCAGTGCTCCGGG
TTGGAAGCCGGAACGGGGCAACGGCGAGGGAAGCGATGATGATGGATGGGAT-AAGCTGGAATACGGAGGGGGCGAG---
----GCAGGGGCATGTGCGACGGGTGGCAATGATGAGAAATGGACAAGTGCGTCCACTGCGGCGCGGCC-----------
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>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------------
-------S-------S-S------------------SS----S--------------S----------------------
------S----------------------------------S--------------------------------------
--S--S-------------------------------------------S------------------------------
--------------SS--------------------------------SSS---S-----------S-------------
------------SSSSS-------S---------------S----------SS-SS------------------------
--SSS-S-------------------------------------------------------------------------
-------S----------------------S-------SSS---------------------------------------
--------------------------S----------------------------SS-------------SSSS------
-----------------SSSS-----------------------------------------------------------
----------------------------------------------------------------------SSSS------
-----------------------------------------------------------------S-----S--------
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----S--------------------------------S-----------------------------------------S
-----S--------------------------------------------------S-----S-----S-----------
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S------------S--S--------------S----SS------------S-------------S---------------
---------------------------S-----------------------------------------S----------
-S---------------S--------------------------------------------------------------
-----------------------------------------------------------S------------------S-
-----------------------------------------------------------------S--------------
--------------------S--------SS-----------S-S----------SS---------------S-SS----
----------S-----------S-S-----------------------------------S-S-----------------
-----------------------------S-------------------------SS-SSS-S-SS-SSS----------
--------------------------------------S----S-----S--------------------------S---
--------------S-----------------------------------------------------------------
-----------------------------S----------------------------S---------------------
----------------------S-S-------------------------------------------------------
------------------------S-------------------------------S-------S---------------
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--------------------S---------S----------------------------------S----------S---
----------------------------------------------------S---------------------------
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>forward_134
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----------------------------------ATTAGGCTGAGAATGGGCGG--------------------------
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>reverse_1552
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-------------------------------GTCGCGCCATCCATGATTTT-----------------------------
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>forward_233
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-----------------------------------------------------ACGCGCGAGGATAAAATGGA-------
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>reverse_2150
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---------------------------------------------------------------------GGCGCTGTAGT
CTGTAGAGG-----------------------------------------------------------------------
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