>input_sequence_73003
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--ATGCCTAGCCTGAGGCAGTGCAGCAGCTTAGCTGTTGCCATCGACAGGCAGCTGCTCGGCCACCTCTCGGCGACGAAG
ATGAAGATCAGCAAGGCCCCGGTGCTCCTGAAGAAGGCGGTGACGATGTGCAAGAGCAAGACCGGCGTGCTCACCGCCAG
GCTCCTCTTCCTAGCTTCGCTCCGCCGCAGGATGGCCACCGTCGGCGTGGTGTCTCACAAGATACACGCGCTCATGGCGG
CCGCGGACCGGGCGAAGGCGGGAGGGGACTGCCACAAGGCTGTCGTTTCGCGCAAGGTCGACAAGACTCTTCCAGCGATC
CATGCTGGTGAGATCGTTGATCTTACGCATGAATTGGCACTATTTTGTCAAGAGGAAGATGGTGGTGGTAGCTTCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACACCGAAGAGGACGACGACGACGATGTTGGTGATG
TGCTACTCGATGGGTGCGATGGTCTCCACGACGAGCCCTCGGTGATAGATGTGATCAGGAGCAACATGGAAGTCCAGGGG
TTGGAGTTCAACATGGAAGATGAGATCGACCAAGCTGCCGATATGTTCATCAGGAGGTTCCGGGAGCGGATGAGCAAGAG
CATTTAG-------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G301000
TTTTTGAGAATTCCCGACCCGTG--AAGCCCGGGGTCAAATGACCACACTCGTATAAAAATTATAACCAAAAGAACAATA
AGAATCATGCAATATGGAGGAATAGCAAATCCTTCTACTCAAAGGGGTGAACATCAAGTTCTCAAAGGAATGCGGAGTGT
CTAATCCCTGTAGAATTGACTAAACTGAGACTGTCTAGCTCGTGCATTTCACACTCAAATCAAAGGTGGC-CCCAGCTAG
TTCTTATTTCCTTTCAATAATTGATAGCAGCTA-GCTCTGCACCATGTTCTCGCCTCCTTTTGATATGATAACAAAGGAG
TTGTGCGGGCACCACTATTTATTTGCTGCCGTCCCCACTTGAG-GGACCTACAAATCTCAAAAGCCCACCG----TGTTT
CCGTCCTTGATGTGGTTGTCGCCACAGTGACGCGCACGGGGAGCACGCATGCCCCCTCC----CTGACCACTCCAACCTA
ACCATGG-CCGGCTGCATGGCTGAAGGC-------CGTGTTGACGAGCACCACCAGCCGGCAAAGCTAAGCTAGCGCACA
----CAGGATCGAGAAGGAAAGCTACGCAAAGTCACACAAAGCAGCAGCAGCAGCGCATGGGGCAGAAGAAATAACAACG
GAGATATA--CTATGTGTTATTTGTGGCCTAACCGGAGCGGAGCAACCTATACTT-----TCGACATATCCTTCCTCAC-
-CTCATATCTCTCTAGCTTTTCTTGCATCTTTAACTAGCTTCCAAACGCACCCAGCTTTAGTTCCCCCTCAAATATATGT
AGTGCACAGTCCACATGCTCAAATTGCTCTCTCTCCATGTTATTTTCACACGCTTTGGACTACCAAAAAGCTTGATCATG
ACATGGGCAGCAAAGCCGCACAGTG--------TTGGGGTTTCCAAGCTAGCTCCAGACTATAAATACATCCTAGGGGCC
TCAGGACAAGGCCCATGAAACTGAAGCCACCTTGCTTGACTCCCAGTCTCATCGTCTCGATCTTCGGTTTGGTGATCTGC
GCATGCCTAGCCTGAGGCAGTGCAGCAGCTTAGCTGTTGCCATCGACAGGCAGCTGCTCGGCCACCTCTCGGCGACGAAG
ATGAAGATCAGCAAGGCCCCGGTGCTCCTGAAGAAGGCGGTGACGATGTGCAAGAGCAAGACCGGCGTGCTCACCGCCAG
GCTCCTCTTCCTAGCTTCGCTCCGCCGCAGGATGGCCACCGTCGGCGTGGTGTCTCACAAGATACACGCGCTCATGGCGG
CCGCGGACCGGGCGAAGGCGGGAGGGGACTGCCACAAGGCTGTCGTTTCGCGCAAGGTCGACAAGACTCTTCCAGCGATC
CATGCTGGTGAGATCGTTGATCTTACGCATGAATTGGCACTATTTTGTCAAGAGGAAGATGGTGGTGGTAGCTTCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACACCGAAGAGGACGACGACGACGATGTTGGTGATG
TGCTACTCGATGGGTGCGATGGTCTCCACGACGAGCCCTCGGTGATAGATGTGATCAGGAGCAACATGGAAGTCCAGGGG
TTGGAGTTCAACATGGAAGATGAGATCGACCAAGCTGCCGATATGTTCATCAGGAGGTTCCGGGAGCGGATGAGCAAGAG
CATTTAGTC--ACCTGTTTGTGTTTCATCTATACCTGATTGCACGGTCGACGCAGAAGTGTACGTATGCGTACCGCTGAC
TAGTTGACGGTAGATGTCGCGAGGGAGAATGTTAGATTGAATTTTTTTTTTCGAAAAGGGGACATGGACCCGGCCTCTGC
ATTAGAACGATGCATAGGGCCATATTATTAAGAATAATCCAAAAGATTCCACAAAGATCTTCCGTTCTGAAAAGCAGAAA
AGCTCACAAAGAGCAAAAGAACATAACAGGAAAAGCCACAACCGGCAGGCAAAATAAAATAAGATAGGAACCTAAAAACC
TATCCTATTACATGACCGTCATCCAAACCGGTTGAAGATATCCCGAGCTACCATCTCCCAACGGACAGATCCAGTAACCA
AACGCTCCCTGGCCTCCGTTGGAGTGAGTAGCAATCACATACGGATATAGTAGGGGGCAGACTATACAGTAATGTTAGAT
TGATACTGTAGCATATAGTAGGGG-CAGACTATACAGATCTTTTCCGGGCACCGACAAATTAGTT-TTTTTTTAAGAAAT
AGTAACGT---GTAGTACAATCATGTAATGGGTAGCAGATATTTAAACAT---TTTTTTTGGAGGATTTGTTCAACCTTT
TTCTTGGATCTGGATCCAATGGTTCT-AGTATTTCTACCCACTTTTCATAACAAGCATCATGTCTCATAATAAGCTAATA
ATTGTGAAAATCGATGCCGGTTCGCCCCGTCTTCGGCAGCCTTAGAGCTATGGTGGCGCGGTGGATCCCGACCCTTGCCG
GCGGAAGGGCTCTGTTTTCAAACGTTCTTTCGAGTTTGTTAGGGTTTTGTGTCCTGCTCAAAAAGATGAGACGGCGGCGA
CTCCTTGAAGATGGAATAAGGTTCTCCTCGCCTAGCCCTGTCCCGGCAGTGTGTCTAGCATCGTCGGTGAGCATGTGGAG
GTGTGTCTCCGACGGATCTGTCCTTCGTGGATTTGTTCGGATCTAGTTGTAGTTCGTC
>chr5B_1
TTTTTGAAAATTCCCAAACCCATGAAATCCGGGGGGCAAACGTAC-CACACGTATAAAAATTATAACCAAGGGAATACAA
AAAATTATG-------------TAGCAAACCCTTCTACTCAATGGGATGCACAGCAAGTTCTCAAAGGAATGCACAGTGT
CTAATCCCTGTAGAATTGACTAAACTGAGATTGCCTAGCTCGTGCATTTCACACTCAAATCAAAGGGGGGGCCTAGCAAC
TTCTTATTTCCTTTCAGTAATTGAGCTAGCAGCTGATCTGCGCCATGTTTTCTCCTTCTTTTGG-----CAATAAAGGAG
TTCTGTGCGCACCACTAT-TTTTTGGGTGCCATCTCCTGTCCACGGACCTACAAATCTCAAAAGCCCACCGGCCGTGTTT
CCGTCCTTGATGTGGTTGTCGCCACAGTGACGCGCACGGGGAGCACGTACGGCCCCTCCTAGCCTGACCACTCCAAACCA
ACAACCTCCCTGCTGCATGGCTGTAGCGGGCCGTACGTGTTGACGAGCACCGACAGCAAAGCT--------TAGCGCACA
----CAGGATCGAGGAGGAAAGCTACGCAAAGTCACA-AAAGCAGCAGCAGCAACGCATGGCGCAGAAGAATTAACAACG
G------------AGTGTTCTTTGTGGCCTAACCGGAGCAGAGCAATATATACTT-----TCGACATACCCTTCCTCAC-
-CTCATATCTCTCTAGCTTTTCTTGCATCTTTAACTTGCTTCCACACGCACCCAGCTTTAGTTTTCTCCCTCAA--ATAT
AGTGCGCAGTCCACATGCTTAAATTGCTCTCTCTCCATGTTATTTTCACACGCTTTGGACTACCAAAAAGCTTGATCATG
ACATGGGCAGCAAAGCCGCACAGTGTTGCCTGCTTGGGGTTTCCAAGCTAGCACCAGACTATAAATACATCCTAGGGGTC
TCAGGACAAAGCCCATGAAACTGAAGCCACCTTGCTTGACTCCCAGTCTCATCATCTCGATCAGCACTTGGGTGATCTGC
GCATGCCTAGCCTGAGGCAGTGCAGCACCTTAGCTGTTGCCATCGACAGGCAGCTGCTCGGCCACCTCTCCGCAACGAAG
ATGAAGATCGCCAAGGCCCCGGTAGTCCTGAAGAAGGCGGTGACCATGTGCAAGAGCAAGACCGGCGTCCTCGCCGCTAG
GCTCCTCTTCCTCGCTTCGCTCCGGCGCAGGATGGCCACCGTCGGCGTGGTCTCTCACAAGATACACGCGCTCATGGCGG
CCGCGGACCGGGCGAAGGCGGGAGGGGACTGCCACAAGGCTGTCGTTTCGCACAAGGTCGACAAGACCCTTCCATCGATC
CATGGCGGTGAGATCGTTGATCTTAAGCATCAATTGGCAATGTTTTGTCAAGAGGAAGATGGTGGTGATATATGCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACACGGAAGA---CGACGATGAAGATGCTGGTGATG
TGCTACTCGATGGGTGCGATGGCCACCCCGACGAGCCCTCGGTGATAGATGTGATCAAGAGCAACATGGAAGTTCAGGGG
TTGGAGTTCAACATGGAAAATGAGATCGACCAAGCTGCCGATATGTTCATCAGGAGGTTCCGGGAGCGGATGAGCAAGAG
CATTTAGTG--ACCTGATTG---------------------CACCGCCGACGCAGAAGTGTACGTATG--------TGAC
TAGTTGACAGTAGATGTCGCGAGGGAGAATGTTAGATTGA----------------------------------------
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---TACTGTAGCATATAGTAGGGGGCAGACTATACAGATCTTTTCCAGGCACCCACAAATTAG---TTTTTTTGAGAAAT
AGTAACGTGTAGTAGTACAATCATGTAAGGGGTAGCAGATATTTAAACATAATTTTTCTTGGAGGATTTGCTCAACCTTT
TTCGTGGATCTGTATCCGATGGCTCTAAGTATTTCTACCGACTTTTCATAACAAGCATCCTGT-TCACAGCGAGCTAATA
ACTGCGAAAATC--------------------------------------------------------------------
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>chr5D_101
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----------------------TAGCAAATCCTTCTGCTCAAAGGGATGAGCAGCAAGTTCTCAAAGGAATGCAGAGTGT
CTAATCCCTGTAGAATTGACTAAACTGAGACTGTCAAGCTCGTGCGTTTCACACTCAAATCAAAGGGGGC-CTA------
--------------CAATAATTGAGCTAGCAGCTGATCTGCACCATGTTTTCTCCATTTTTTGG-----TAATAAAGGAG
TTCTTCGCGCACCACTAG-TATTTGCTGCCGTCTCCATTTCAG-GGACCTACAAATCTCAAAAGCCCGCCGTACGTGTTT
CCGTTGTTGATGTGGTTGTCGCCACAGTGACGCGCACGGGGAGCACG-------------------------CCCAACCA
ACAACCTCTCTGCTGCATGGCTGCAGGC-------CGTGTTGACGAGCAGCACCAGCCGGCAAAGCTAAGCTAGCGCACA
----CAGGATCGAGAAGGAAAGCTACGCAAAGTCACACAAAGCAGCAGCAGCAGCGCATGGGGCAGAAGAAATAACAACG
GAGATATATACTATGTGTTATTTGTGGCCTAACCGGAGCGGAGCAACCTATACTT-----TCGACATATCCTTCCTCAC-
-CTCATATCTCTCTAGCTTTTCTTGCATCTTTAACTAGCTTCCAAACGCACCCAGCTTTAGTTCCCCCTCAAATATATGT
AGTGCGCAGTCCACATGCTCAAATTGCTCTCTCTCCATGTTATTTTCACACGCTTTGGACTACCAAAAAGCTTGATCATG
ACATGGGCAGCAAAGCCGCACAGTGTTG--------GGGTTTCCAAGCTAGGTCCAGACTATAAATACATCTTAGGGGCC
TCATGAGAAGGCCCATGAATCTGAAAACACCTTGCTTGACTCCCAGTCTCATCATCTCGATCAGCACTTGGGTGATCTGC
GCATGCCTAGCCTGAGGCAGTGCAGCGCCTTAGCTGTTGCCATCGACAGGCAGCTGCTCGTCCACCTCTCGGCGACGAAG
ATGAAGATCAGCAAGGCCCCGGTAGTCCTGAAGAAGGCGGTGACCATGTGCAAGAGCAAGACCGGCGTCCTCGCCGCTAG
GCTCCTCTTCCTCGCTTCGCTCCGCCGCAGGATGGCCACCGTCGGCGTGGTCTCTCACAAGATACACGCGCTCATGGCGG
CAGCGGACCGGGCGAAGGCGGGAGGGGACTGCCACAAGGCTGTCGTCTCGCGCAAGGTCGAGAAGACGCTTCCCGCGATC
CATAG---------CGTTGATCTTACGCATCAATTGGCACTGTTTTGTCAAGAGGAGGATGGTGATGCTGGCTTCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACACGGAAGA---CGACGATGAAGATGTTGGTGATG
TGCTACTCGATGGGTGCGATGGCCACCACGACGAGCCCTCTGTGATAGATGTGATCAGGAGCAACATGGAAGTCCAGGGG
TTGGAGCTCAACATGGAGGATGAGATCGACCAAGCTGCCGATATGTTCATCAGGAGGTTCCGGGAGCGGATGAGCAAGAG
CATTTAGTC--ACCTGCTTGTGTTTCATCTATACCTGATTGCACGA-------------------ATGTGTGCCGCTGAC
TACTTGACAGTAGATGTCGCGAGGGAGAATGTTAGATTGA----------------------------------------
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>chr5A_523
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---------------------------------------------------------------AGCAAAGCTAGCGCACA
CATACAGGATCGAGAAGGAAAGCTACGCAAAGTCACACAAAGCAGCAGCAGCAACGCATGGCGCAGACGAATTAACAACG
GAGC--TATACTAAGTGTTCTTTGTGGCCTAACCGGAGCAGAGCAATGTATACTTCACTTTCGACATATCCTTCCTCATA
TCTCACATCTCATTAGCTTTTCTTGCATCTTTAACTTGCTTCCACATGCACCCAGCTTTAGTGTTCTCCCTCAA--ATAT
AGTGCGCAGTCCACATGCTCAAATTGCTCTCTCTCCATGTTATTTTCACACGCTTTGGACTGCCAAAAAGCTTGATCATG
ACATGGGTAGCAAAGCGGCACAGTGTTG--------GGG---------TAGCTCCAGACTATAAATACATCCTAGGGGCC
TCAGGACAAGGCCCATGAAACTGAAACCACCTTGTCTAACTCTCAGTCTCATCATCTCGATCAGCATTTGGGTGATCTGC
GCATGCCTAGCCTGAGGCAGTGCAGCACCTTAGAG------------AGGCAGCTGCTCGGCCACCTCTCAGCCACGAAG
ATGAAGATCGCCAAGGCCCCGGTGCTCCTGAAGAAGGCGGTGACCATGTGCAAGAGCAAGACCGGCGTGCTCGCGGCCAG
GCTCCTCTTCCTCGCCTCGCTCCGGCGCAGGATGGCCACCGTCGGCGTGATGTCTCACAAGATACACGCGCTCATGGCGG
CCGCGGATCGGGCGAAGGCCGGAGGGGACTGCCACAAGGCCGTCGTTTCGCGCAAGGTCGAGAAGACGCTTCCAGCGATC
CATGGCGGTGAGACCGTTGATCTTACGCATCAATTAGCACTGTTTTGTCAAGAGGAGGATGTTGGTGGTGGCTTCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACACGGAAGA---CGACGACGAAGATGTTAGTGATG
TGCTACTCGATGGGTGCAATGGCCACCACGACGAGCCCTCGGTGATAGATGTGATCAGGAGCAACAAGGAAGTCCAGGGG
TTGGAGTTCAACATGGAAGATGAGATCGACCAGGCTGCCGATATGTTCATCAGGAGGTTCCGGGAGCGGATGAGCAAGAG
CATTTAGTCTCACCTGTTTGTGTTTCATC--TACCTGATTGCACGA-------------------ATGCGTGCCGCTGAC
TAGTTGACAGTAGATGTCGCGAGGGAGAATGTTAGATTGA----------------------------------------
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>chr5A_634
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--------------------TTTGTGGCCTAATCGGAGCGGAGCAACCTATACTT-----TTGACATATCCTTCCTCAC-
-CTCATATCTCTTTAGCTTTTCTTGCATCTTTAACTAGCTTCCACACGCACCCAGCTTTAGTTCCCCCTCAAATATATGT
AGTGCGCAGTCCACATGCTCAAATTGCTCTCTCTCCATGTTATTTTCACACGCTTTGAACTACCAAAAAGTTTGATCATG
ACATGGGCAGCAAAGCCGCACAGTGTTG--------GGGTTTCCAAGCTAGCTCCAGACTATAAATACATCCTAGGGGCC
TCAGGACAAGGCCCATGAAACTGAAGCCACCTTGCTTGACTCCCAGTCTCATCGTCTCGATCTTCGGTTCGGTGATCTGC
GCATGCCTAGCCTGAGGCAGTGCAGCACTTTAGCTGTTGCC---------------------------------ACGAAG
ATGAAGATGAGCAAGGCCCCTGTGCTCCTGAAGAAGGCGGTGACGATGTGCAAGAGCAAGACCGGCGTGCTCGCAGCCAG
GCTCCTCTTCCTCGCCTCGCTCCGGCGCAGGATGGCCACCGTCGGCGTGATGTCTCACAAGATACACGCGCTCATGGCGG
CCGCGGACCGGGCGAAGGCGGGAGGGGACTGCCACAAGGCTGTCGTTTCGCGCAAGGTCGAGAAGACGCTTCCAGCGATC
CATGGCGGTGAGATCGTTGATCTCACGCATCAATTGGCACTGTTTTGTCAAGAGAAGGATGTTGGTGGTGGCTTCCCTGA
CTGGACGCTGCACCCCATCTTCAATGACGATGACAATTGCTGTTACGT--------------------------------
----------------------------CGACGAGCCCTCGGTGATAGATGTGATCAGGAGCAACATGGAAGTCCAGGGG
TTGGAGTTCAACATGGAAGATGAGATCGACCAAGCCGCCGATATGTTCATCAGGAGGTTCCGGGAGCGAATGAGCAAGAG
CATTTAGTG--ACCTGCTCGTTTTTCATCTATACCTGATTGCACGGCCGACACAGAAGTGTACTA---------------
---------------GTCGCGAGGGAGAACGTTAGATTGA----------------------------------------
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---TACTGTAGCATATAGTAGGGGGCAGACTAAACAAAACTTTTCCGGGCACCCACAAATTAGTTTTTTTTTTGAGAAAT
AGCAACGC---GTAGTACAATTATGTAAGGGGTAGCAGATATTTAAACATAATTTTT-TTGGCGGATTTGCTCAACCTTT
TTCTTG-ATCTGGATCAGATGGCTCT-ATTATTTCTACTCACTTTTCATAACATGTATCCTATCTCATAGCGAGCTAATA
A-------------------------------------------------------------------------------
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>SNPs
-------S-------S-S--SSS----S--S----S----S-SS-S---S--------------------SS---S-SS-
-S---S---SSSSSSSSSSSSS------------------------S------S-------------------S------
------------------------------------------------------------------S------S---S-S
------------------------SSSSSSSSS--S-------------S--S---S------SSSSSS---S-------
--S----S----------S------------------S--S---------------------------------------
-----------------------------------------------S-S-S------------------------S-S-
--S-SSS---S------------S--------------------------------------------------------
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-----S--------------------------------------------------------------------------
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---------------------------------------------------------------------S----------
---------------------------S----------------------------------------------------
------------------------------------------------------------------------S-------
------------S-------------------------------------------------------------------
-------------------------------------------------------------------S------------
----SS------------------------S----------S--------------------------------------
------------------------------------------------S-----SSS---------S-------------
----------------------S-S-------------------------------------------------------
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----------------------------------------------S------------------------S--------
--------S-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------------------------------------------S-------------------S------
----------------------------S----------------------------S------------S---------
-----------------S----S------------------------------------S---------SSS--------
-S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_23
---TTGAGAATTCCCGACCCGTG---------------------------------------------------------
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>reverse_2043
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------------------------------------------CCGAGCTACCATCTCCCAAC------------------
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