>input_sequence_72978
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----------------------------------------ATGGCGCCACTCAGATCACTAGTTTTGCTCGTGGCGTACG
CCGTACTCGTGGCGGCGGTGCTGCAAGCATCGGAAACGAGAGTACAGGCAGCTACCTCCTCGCCTTCTTCACCGTT---C
ACCGCCGGTGACCCGCCACAGCCCTCCCTCCCGGGCTCGCCGCCTCTACCAGGCTCGCCCGCGTTCCCGCCGTCGCCCGG
CTTCCCGGGCATGG-CAGGCGCGCAGCCGTCTACGTCGCCTTCGCTGCACCCGGCCAGAACATGCATGGAGCCGCTGATA
CTGGTGGAACCGTGCGCCAGCTACCTGACGAACTCCAGCGTGCGGGCGCCGCCCAGAGCGTGCTGCGATGGCCTCAGGTC
GCTCGTCGGCGGCGGCGACAGGATTTGCCTGTGCCACGCCATCATGGGCGACCTGGGTATATTTGCAGGCGGGACGATAG
ACCAGCTACGCATGCTCGTGCTGCCTCTAACGTGCACCACGTTCATACCGCCGGACCTTCTTCTGATGTGCCTCGGCAAG
TCTGAATCGTTGCTTTGTTTTATTTTTATTTTTTTCGAAACGGATTTTGTTTTATTTTTATTAACTGTA--TGAACTTAC
GAGATGAACTGTCATGTGTTTGCAGTTAACCCTGTCCCGCCGATTCTGTAA-----------------------------
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>chr2B_1_TraesCS2B01G215500
GAAGGTGACGGAGTTTGCCACGGTCTGGAATTTGAGCACATGGGTGATCATATCCAATTTCTAAAGCAGAATCCAGCTAC
GTTTGAGGATTTTATCCAAGTGTGCGAGCAACTAATGAGTAGTTTCGAAATGATCTGGTTGAGCATTTATGGGGGCTTCG
AGTGGAGAACCAAAAAAAAGTTCGAATAAGTTGAATTCAAATTTAAACTATTTATCTATTAAACTTCGTGTTTGAATCAT
AGTATTTTATACTCCCATCTTTCAGCTTTATAGGGCTTAATTCAAAAATCTCACCAACCAAGATAGGTGGTGAGTGATGG
AATATTTTATGATTTGCAAAAGTACTCAATTAAGGTGCTCGTTTTTCTCAAAAAATATGTTTACCAATGCATTAATTGCA
TTGCATGCATGCTTGACTAAAAAATAACCAGGAGCTTGTATATGCATTGTTGAGTTTTCTGTTGATCTTCGCATGAGGTG
ATTTAATGCACCTTGATATCTGAGCGTGTGATGAAGAGCAATAAAAATGAGACTTATATAATGAGAAAACGAAAATTTTG
ATACAAGACCTGTAAACCGGAAAGGAGGTAGCATTTGAATTATTGTTGCATTGGAATATTTGCATGACATGATTATAGCT
GAAGGACTTTTTTATTTATAAAAATAGTGCTTTGGATATTAAAAAAACAAAGATGAAAAAAAAAGAAACGGACACTTGAT
GCGCTGCGTTGAATGGCCGCCTCCTTAACCGTTGTCCACGAGCATGTTTGGACATATCCATAGAAATTTCGTGTGTTGCA
CAACTTTGGAGTTGCCCTTACCAACTCCGTACGAGGGGAACCTGCAAAGAAACGAGTAGAAAGAACGTGAGTCGGCGAAT
AAGGAGTGACAAAAAGCATGAATTGACTCCCGAAGCCGCTATTAATTGACAGCAGGAGCAAGGAGCCAACGCAACGACAC
GTACGTGACTTTGACTCAAGTTGACCACACACACACTGTGATGGCGCCACTCAGATCACTAGTTTTGCTCGTGGCGTACG
CCGTACTCGTGGCGGCGGTGCTGCAAGCATCGGAAACGAGAGTACAGGCAGCTACCTCCTCGCCTTCTTCACCGTT---C
ACCGCCGGTGACCCGCCACAGCCCTCCCTCCCGGGCTCGCCGCCTCTACCAGGCTCGCCCGCGTTCCCGCCGTCGCCCGG
CTTCCCGGGCATGG-CAGGCGCGCAGCCGTCTACGTCGCCTTCGCTGCACCCGGCCAGAACATGCATGGAGCCGCTGATA
CTGGTGGAACCGTGCGCCAGCTACCTGACGAACTCCAGCGTGCGGGCGCCGCCCAGAGCGTGCTGCGATGGCCTCAGGTC
GCTCGTCGGCGGCGGCGACAGGATTTGCCTGTGCCACGCCATCATGGGCGACCTGGGTATATTTGCAGGCGGGACGATAG
ACCAGCTACGCATGCTCGTGCTGCCTCTAACGTGCACCACGTTCATACCGCCGGACCTTCTTCTGATGTGCCTCGGCAAG
TCTGAATCGTTGCTTTGTTTTATTTTTATTTTTTTCGAAACGGATTTTGTTTTATTTTTATTAACTGTA--TGAACTTAC
GAGATGAACTGTCATGTGTTTGCAGTTAACCCTGTCCCGCCGATTCTGTAAGGCGCG-----------------------
--------GGGTGCTCCGGGCGGCAGCTGCTACTACTCCTACATGCTATCCCTTTTTCTTTTCTTTT---TTCCCCTTGT
GCTACATACTCCACCGGTCACTGGGCACCACACCGGTCATTGTTGTACTAGT----------------------------
---------------------------------------------------------------------TGGCAGCCCTG
TTCGCAGACGTGTGGCCACACACT-------------------------------TATCTTGTAACACAGCCGATATCGT
TGAA----------------------------------------------------------------------------
-----------------------------TAAGAAATAGAGAGATAACCACTGTTTATTTCGCACTGTTCTTTTGCCTTC
ATTTTATCGCACGTTCATCCGCACTTTGCAATCGG---------------------------------------------
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---------------------------------TTGAGAGAGAGAACGACGGCGTGACGGCGATTTCCACGGCGGCCGGC
GGGGAGAACATCAACACAGGAAAAAGGCGAGGAAATCACCGTCGGCGAAAAGTGCTCGGGCAGCACATGGTGAGTCAAGC
AACTGCGTCACTCCGGCGAACCAATACTGCAATGGAGGCAGCGTCTCCTCCCGACATTTGCAAATGTTTAGACGGTGGCA
CCGTGCTCGGAGAACAACGTAGGCATCGTCGCGGTGCGCATTCGCCTCGCCCTTGCGGGAGCCACGGTGCGCGGCAAGAC
CTTGTCGTGGCCACTCCGCAACGACTCGACTCCTCAGGTCAAGGCGGCAGGGCACGACGTGGGCGCCAAGGCGCGAGATG
TCGGCGGCATCGCATGGCCCAGCGGGGGCTGCAGGCGTTGCGTCGGCAGCAAACGGCTGCTGGATCCGAGACGCGGCGGC
CCGCCCTCCCGACGGTGGGTGGCAGCGACATCCGCCTGTATAGCCGCTGGGCGCGGCTGGCTGCTCGGCATAGTGGCGGC
TGGTTGCGAGTCGGAGCGGTGCGGCGGCGGTTGGGTCGGGAGGATCCCTAATCGCACCGTGACTCCCCGTGATTTTCTCC
GACGTCCCGTTCTCCGCCCAATGCGCTGCCCCGACGCCACGCTGCTCCGGCCTAGGGAAGCTGCACGCGGCAACTCCCAG
TTTCTACTACCTTGAGAGCACCTCTACCACAACCTG
>chr2B_1017
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--------------------------------------------------------CACTAGTTTTGCTCGTGGCGTACG
CCGTACTCGCGGAGGCGATGCTGCAACCATCAGAGACGAGGGTACAGGCGGCTACCTCCTCGCCTTCTTCACAGTT---C
ACCG---GTGACCCGCCACGGCCCTCCCTCCCGGGCTTGCCGCCTCTACCTGGCTTGCCCGCGTTACCGCCGTCGCCCGG
CTTCCCGGGCATGGGCAGGGGCGCAGTCGTCTCCTTCGCCTTCGCAGCAGCCGGCCAGAACATGCTTGGAGCCGCTGATA
CTCGCGGAACCGTGCGTCAGTTACCTGACGAACTCCAGCGTGCCGGCGCTGCCGAGAACGTGCTGCGACGGCTTCAGGTC
GCTCGTCGGCGGCGGCGACAGGATTTGCCTGTGCCACGCCATCATGGGCGACCTGGGTACATTTGCAGGCGGGACGATAG
ACCAGCTACGCATGCTCGTGCTGCCTCTAACGTGCCGCACGTTCATACCGCCGGAGCTTCTTCTGATGTGCCTCGGCAAG
TCTGAATCGTTGTTTTGTTTTA---------------------------------TTTTATTAATTGTA--TGAACTTAC
GAGATGAACTGTCATGTGTTTGCAGTTAACCCTGTCCCGCCGATTCTGCCGGAATGAACCAGTTGCGCGCGGGTGTCGGA
GAAATGCTGGGTGCTCCGGGCGGCAGCTGCTAC---------ATGCTATCCTTTTTTCTTCTCTTTTCTTTTTCCATTGT
GCTACGTA---------TCTGTGGGCACCACACCTGTCACTGTTGTACTAATACTCCCACCGTCCCAAAATAAGTGTTTT
AACTTTATACTAATTTTGGT----------------ATTAAGACATTTATTTTCGACGGAGGGAGTAGTTGGCAGCACTC
CTCGCAGACGTGTGACTATCTGTTAGCTGGCCACACACTTACTCCGCACTGGAAGTATCTTGTAGCACAACCGATATCAT
TGACTACC-CCTCCGTCCCGTAATATAAGAACAATTTTTACACTAATATAACAACATTTTTTAAT-TACATCAATGTCAA
AAATGTTCTTATATTTGGGACGGAAGCAGTAAGAAATAGAGAGATAACAACTGTTTGTTTTGCACTGTCCTTTTGCCTTC
ATTTTATCGCACATTCATCCGCACTTTGCGATCGGCTGAGGCCCCTCCCAGTGCTTCAACTTGTACAGGTGCTAAGCCTT
CCACGTAGGCAAAAAAATCTGATGTGCCAAGTTATTTAAGAGGAGAGAGATGAGTGTGGTGACCCTAGAAAGAAACAATG
TTAAGCGCGTGAACATAGGCAAAACATTTAAAGGAAGGAAGCCCACCAATACATGAAGAGATTTAGTTGTTAAATCATTA
AATGAAATAAGCTTAGCAACCATAAGCTAAGCATCTATGCATTGGGGAGTATAGTTGCTAAGCTATTTAATGTGCTTAGC
ACCTCATCTAAGCACACATGCATTGGCAGCAGCCTGAGAGAGACAACCGCGACGTGACGGCGATTTCCAT-------GGC
GGGGAGAACATCAACACAGGAAAAAG------------------------------------------------------
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>chr2A_1017
CAT-----------------------------------------------------------------------------
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-----------------------------------------------------------TAGTTTTGCTCGTGGCGTACG
CCGTACTCGCGGAGGCGATGCTGCAACCATCAGAGACGAGGGTACAGGCGGCTACCTCCTCGCCTTCTTCACAGTT---C
ACCG---GTGACCCGCCACGGCCCTCCCTCCCGGGCTTGCCGCCTCTACCTGGCTTGCCCGCGTTACCGCCGTCGCCGGG
CTTCCCGGGCATGG-CAGGCGCGCAGTCGTCTCCTTCGCCTTCGCAGCAGCCGGCCAAAACATGCTTGGAGCCGCTGATA
CTTGCGGAACCGTGCGTCAGTTACCTGACGAACTCCAGCGTGCCGGCGCCGCCGAGAACGTGCTGCGACGGCTTCAGGTC
GCTCGTCGGCGGCGGCGACAGGATTTGCCTGTGCCACGCCATCATGGGCGACCTGGGTACATTTGCAGGCGGGACGATAG
ACCAGCACGT--------------------------------------CGCCGGAGCTTCTTCTGATGTGCATCGGCAAG
TCTGAATCGTTG-TTTGTTTTG---------------------------------TTTTATTAACTGTA--TGAACTTAC
GAGATGAACTGTCATGTGTTTGCAGTTAACCCTGTCCCGCCGATTCTG--------------------------------
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>chr2D_1032
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-----------------------------------------------------------------------TGGCGTACG
CCGTACTCGCGGAGGCGATGCTGCAAGCATCGGAAACGAGGGTACAGGCGGCTACCTCCTCGCCTTCTTCACCGTTCACC
ACCG---GTGACCCGCCACAGCCCTCCCTCCCGGGCTCGCCGCCTCTACCAGGCTCGCCCGCGTTCCCGCCGTCGCCCGG
CTTCCCGGGCATGG-CAGGCGCGCAGCCGTCTACTTCGCCTTCGCTGCACCCGGCCAGTACATGCATGGAGCCGCTGATA
CTGGTGGAACCGTGCGCCAGCTACCTGACGAACTCCAGCGTGCGGGCGCCGCCGAGAACGTGCTGCGACGGCTTCAGGTC
GCTCGTCGGCGGCGGCGACAGGATTTGCCTGTGCCACGCCATCATGGGCGACCTGGGTACATTTGCAGGCGGGACGATAG
ACCAGCTACGCATGCTCGTGCTGCCTCTAACGTGCAGCACGTTCATACCGCCGGAGCTTCTTCTGATGTGCCTCGGCAAG
TCTGAATCGTTGTTTTGTTTTA---------------------------------TTTTATTAATTGTACATGAACTTAC
GAGATGAACTGTCATGTGTTTGCAGTTAACCTTGTCCCGCCGATTCTGCCGGAATGAACCAGTTGCGCGCGGGTGTCGGA
GAAATGCTGGGTGCTCCGGGCGGCAGCTGCTAC---------ATGCTATCCCTTTTTCTTTT-TTCTTTTTTTTCATTGT
GCTACATA---------TCTCTAGGCACCACACCTGTCACTGTTGTATTAGTACTCCTT-CGTCCCAAAATAAGTGTCTC
AACTTTATACTAATTTAAATACAAAGTTATATTAAAATTAAAATATTTATTTTGGACGGAGGGAGTAGTTGGTAGCACTC
CTCACAGACGTGTGACTATTTG-------------CACTTACTCCGCACTGGAAGTACCTTGTAGCACAGCTCAGATCAT
CGACTACTTCCTCCGTTCCGTAATATAAGAACAATTTTTACACTAATATAACAACATTTTTTACACTACACCAATGTCAA
AAACATTATTATATTATGGGATGAAG-AGTAAGAAATAGAGAGATAACCACTGTTTATTTCGCACTGTTCTTTTGCCTTC
ATTTTATCGCACATTCATCCGCACTTTGCGATCGG---------------------------------------------
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---------------------------------CTGAGAGAGACAACCGCGACGTGACGGTGATTTCCAT-------GGC
GGGGAGAACATCAACACAGGAAAAAG------------------------------------------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
---------S--S----S----------------------S--------S------------------------------
----SSS-------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----------------------------------------------------S---S----------S---S-------
-----------------------------------------------------------S--------------------
------------------------------------S------------------S------------------------
------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------------------SSS-SSSSS-----------------------
---------------------------------SSSSSSSSS------------------------------S--S----
--------SSSSSSSSS--S--------------S----S----------------------------------------
----------------------------------------------------------------------------S--S
S-------------S-S-SSSSS-----------------------------------------S-------------S-
---S----------------------------------------------------------------------------
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------------S----------------S--------------------------------------------------
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---------------------------------S---------S---SS--S-----------------SSSSSSSS---
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_758
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------------------GCCTCCTTAACCGTTGTCCA------------------------------------------
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>reverse_2683
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------------------------------------------GTCTCCTCCCGACATTTGCA------------------
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