>input_sequence_72951
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------------------------------------------ATGAGCGGCCAAGTTTACCCACCGCCGCCGGCGGCGAT
GGCGCCGCAGCCGCAGCCTCACGGGCAGGTGGCGGCCAACAACTGGGCGGGCAACGACGCCAACACGCTGCTGGTGGTGG
CGACGCTGATCACCACGCTCACGTACCAGCTCGGGTGCAGCGTCCCCGGCGGGTACTGGCAGGACACGCTGCCGGCGGAC
GGCAAGCAGAAGCCGCACGAGGCCGGTGACCCCATCATGCGCGACAAGCACCCGCAAAGGTACGCACAGGGTACATGCTC
CTGGTTAGAAACTTAGATTCTGATCGAAAGCCCGGTGGTCATGCGGACGTTCCTTGACTGATGGCATGCATGCGTGCAGG
TACTGGGTGTTCATGGCGGCGAGCTGGATGGGGTTCCTGGCGTCCATGATGATGACGCTGAGCCTGCTGGTACGCCTGCC
GGTGGACTCGCGGCAGGTCCGGTGGTCCTTCGCCGTCGCCTACTCTAGCCTGGTGCTCACCTTCATCGTGTCGCAGGCCA
AGACGCACATCTCAATCGACATCGCCATCTGGTTGGTCACCGTCGTTTTCCTGTGGCTCATGATCAGCGTCCGCCCTGAG
CACCGGGCGCGTATTCTCCGTTTCTTCTGCTGCAACCGCGAGAACTGA--------------------------------
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>chr4B_1_TraesCS4B01G220100
TTATATATATTTTGCGAATATTTAGATTGTACAAGCAAAATTTAATACTACTCCCTCCGACCCATATTAATTGGCACTGA
TGTTTTGTACTAAATCAACGATAATTATTATGGATCAAAGATGTACTAGAGTATGTTAATCCCAAATACATAGTCGAAAC
CATGCAATTAATAATTTCTAGATTTCACAACTAATTAATACAAAATATCCAGATTTTTAGGTATA--AATTAAACATCAG
ATTTTTTTATGAAAGATAGATTTATTATATGCATCTTATACATTTTTTATTAACTTG----------TACATACAAAAGG
TATATGCTAAGATTGTATCTTGAAGATTGGTCATATCTA---AACCATATTGATTTTTCGAA-CAGTGTGAGTATTACTT
TATTCATCATGATTTTTTTATGATTTTTTTTTTGAGAAGGAGGATCATCCT-GGCCTCTGCATCCGACATATGCATGCGT
CCATATTATTAAAAGGTGTCAACAAAATACAAAGTCTGCAATCTAGATGATTTTTTTAATGATGACTGTCAAAATCTAAA
ACGTAGAATCAAC---CTCAAGGG--------------------------------------------------------
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-------------------------------------------------------------------------CTTTGTT
AGGTCACTCTTACTCAAGACTGATCTTAGATCACTCCAGGTAATCTCGCAGTTTCCTGTCAAATCAGCCAGTCAGAAAA-
GTTGGACTATGTGTACTCATTTAATGGCGTACATCCGAATTTGCTGGCACCATTAAATGAGCACACTCTAAATGACAGCA
TATCACCTGATTTGGATTCGAATAAAGCACTAAATGAGAGCATATCTGGCACCACATTGCAGATTGCAGTA---ACTGAC
AGTAT--GCCTGCATCACACTGTCGAGTAGGAAACGCAGTCGAGTAAGCAACCGCCGCGTCTGACCGTGACTTCGCCGGT
GACCGGTCACGTGCCCGCCCGTCCTATAAACACAACCGTTCCATCAGAGTCGACCAGATCAAAGCCTTTTGTCAGTCGCT
CGCTGTCAC-------TCGACACCATGTGGAACAACGGGGCGATGAGCGGCCAAGTTTACCCACCGCCGCCGGCGGCGAT
GGCGCCGCAGCCGCAGCCTCACGGGCAGGTGGCGGCCAACAACTGGGCGGGCAACGACGCCAACACGCTGCTGGTGGTGG
CGACGCTGATCACCACGCTCACGTACCAGCTCGGGTGCAGCGTCCCCGGCGGGTACTGGCAGGACACGCTGCCGGCGGAC
GGCAAGCAGAAGCCGCACGAGGCCGGTGACCCCATCATGCGCGACAAGCACCCGCAAAGGTACGCACAGGGTACATGCTC
CTGGTTAGAAACTTAGATTCTGATCGAAAGCCCGGTGGTCATGCGGACGTTCCTTGACTGATGGCATGCATGCGTGCAGG
TACTGGGTGTTCATGGCGGCGAGCTGGATGGGGTTCCTGGCGTCCATGATGATGACGCTGAGCCTGCTGGTACGCCTGCC
GGTGGACTCGCGGCAGGTCCGGTGGTCCTTCGCCGTCGCCTACTCTAGCCTGGTGCTCACCTTCATCGTGTCGCAGGCCA
AGACGCACATCTCAATCGACATCGCCATCTGGTTGGTCACCGTCGTTTTCCTGTGGCTCATGATCAGCGTCCGCCCTGAG
CACCGGGCGCGTATTCTCCGTTTCTTCTGCTGCAACCGCGAGAACTGACGCCCCAAGCTTTAGTGTTCTTATGTCTTTGT
CGGGTATAAACTGCTGTGAGTTCAGAACTTTTTTGTCGTCTAAAAAGTTCAGAAGTTGT-AACTTTGTTTAGACTCGGAG
TAATAACAAAAGGG-GACGCCTAGGCGTCACTTATATTAATTA-AAAAGTCTTTCAGTCGATTTTGTCAAAGCCGTTTGG
ATTTACAGGTACGCAA---TCCTTCTGCCAGCCACTATTCATCTTCCTCCTCCCGCTAGTCGACATTCTGCCGAGCCTGA
CAGCCTGCGGCCCAACCTTGTTTGACCTGATCATCCCTCTAAACCTCGCACCGAGCTCCCGGGCTGGCAGCCTTCACGCA
CTCAAACAATCGAGCTTCTGATTGGCCTCCGCACGTGACATCGCGGCCACGTCGCCGCAAGCTCCGGCTCGCTTTAGGCG
AGACCTCGACGGTGAGTCCCCGTCTGGGCCTCGGGGCTACACG--CACGAGAACCGACCGATGCAAACAAAACCTTAACT
TTTTTTTGAAATTGATTGGATTGCTTATCACATGTGTTACGTGCTAACAAAAACTCGATTGCATGAGAAATAAATGTGCC
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----------------------TTTTTTGGTGGTTGACAAC-------TTTTTTTTTTTGAAAATGATGGTTGACAAGTA
ACCGACAAATCCTTGCAGCAAATAGGAATGCGCTGCGTACTCTAGATCGTGGCCGGCCCAACAAGGCTGATGAGCACTTA
TTTATTTGTTTATTTATGTGCTTTTTACCTAAACAATGTTCTATTTTATCAAAAAAAA----ACTTTTACCTACACCTAG
TTTGGCTCCCTATAATTTAACTTTGATTTATTCAATTTATGCTAGAATATGAAATTGATTCTGAAAGAGTCTAATTTCAA
TATTTTACTCCATAGTTAGGATCTTGCCTCTCCATTAGTATCCCCCTACACTATTGTCAGACTTAGAACCACGACAGTTG
GCGCCCACCGTGGGGCGGGTGTCTTAGCGACTTACTGGAGAAGTTGCAA
>chr4D_1
TTTTATATATTTTGCTAATATTTAGATTGTACAAGCAAAATTTAA---TACTCCCTCCGACCCATATTAATTGGCACTGA
TGTTTTCTACTAAATCAGCGATAATTATTATGGATCAGAGGAGCACTACA-----TTAATCCCAAATACATATT-GAAAC
CATGCAATTAATAATTTCTAGATTTCACAACTAATTAATACAAAATATCCAGATTTTTAGGTATA--AATTAAACATCAG
AGTTTTTAATGAAAGATAGATTTATTATATGCATCTTATACATTTTTTATTAACTTG----------TACATACAAAAGG
TATCTGCCAAGATTGTATCTTGAAGATTGGTCATATTTA---AACCATATTGATTTTTCAAACCAGTGTGAGTATTACTT
TATCCATCATGATTTTTTTATGATTTTTTTT------AGGAGGATCACCCCCGGCCTCTGCATCCGACAAATGCATGCGG
CCATATTATTAAAATGTGCCAACAAAATACAAAGTCTGCAACCTAGATGATCTTTTTAATGATGACTGTCAAAATCTAAA
TCGTAGATCACTCTTACTCAAGGG--------------------------------------------------------
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-------------------------------------------------------------------------CTTTGTT
AGGTCACTCTTACTCAAGAGTGATCTTAGATCACTCCAAGTAATCTTGCGGTTTGCTGTCAAATCAGCCAGTCAGAAAA-
GTTGGACTATGTGTACTCATTTAATGGCGTACATCCGAATTTGCTGGCACCATTAAATGAGCACACTCTAAATGGCAGCA
TATCACCTGATTTGGATTCGAATAAAGCACTAAATGAGAGCATATCTGGCACCACATTGCAGATTGCAGTA---ACTGAC
AGTATACGCCTGCATCACACTGTCGAGTAGGAAACGCACTGGAGTAAGCAACCGCCGTGTCTGACCGTGACTTCGCCGGC
GACCGGTCACGTGTCCGCCCATCCTATAAACACAGCCGTTCCATCAGAGTCGACCAGATCAAAGCCTTCTGTCATTCGCT
CGTTGTCAC-------TCGACACCATGTGGAACAACGGGGCGATGAGCGGCCAAGTTTACCCGCCGCCGCCGCCGGCGAT
GGTGCCGCAGCCGCAGCCGCACGGGCAGGTGGCGGCTAACAACTGGGCGGGTAACGACGCCAACACGCTGCTGGTGGTGG
CGACGCTGATCACCACGCTCACGTACCAGCTCGGGTGCAGCGTCCCCGGCGGGTACTGGCAGGACACGCTGGCGGCGGAC
GGCAAGCAGAAGCCGCACGAGGCCGGAGACCCCATCATGCGCGACAAGCACCCGCAAAGGTACGCACAGGGCACATGGTC
CTGGTTAGAAACTTAGAATCTGA----AATCCTGGTCGTGCG--GGACGTTCCTTGACTGATGGCATCCATGCGTGCAGG
TACTGGGTGTTCATGGCGGCGAGCTGGATGGGGTTCCTGGCGTCCATGATGATGACGCTGAGCCTACTGGTGCGCCTGCC
GGTGGACTCGCGGCAGGTCCGGTGGTCCTTCGCCGTCGCCTACTCCAGCCTGGTGCTCACCTTCATCGTGTCGCAGGCCA
AGACGCACATCTCAATCGACATCGTCATCTGGTTGGTCACCGTCGTCTTCCTGTGGCTCATGATCAGCGTCCGCCCTGAC
CACCGGGAGCGTATCCTCCGTTTCTTCTGCTGCAACCGCGAGAAGTGACGCCCCAAGCTT-AGCGTTCTCATGTCTTTGT
CGATTATAAACTGCTGTGAGTTCAGAACTTTTTCGTCGTCTAAGAAGTTCAGAAGTTGT-AACTTTGTTTAGACTCGGAG
TAATAACAAAAGGGGGACGCCTAGACGTCACTTATATTAATTTTAAAAGTCTTTCAGTTGATTTTGTCAAAGCCGTTTGG
ATTTACTGCTGGTTCGTCCTCCTTCCGCCAGCCACTATTCATCTTCCTCCTGCCGCTAGTCGACATTCTGCCGAGCCTGA
CCACCTGCGGCCCAGCCTTGTTTGACCTGATCATCCCTCTAAACCCCGCACCGAGCTCCAGGGCTGGCAGCCTTCACGCA
CTCAAACAATCAAGCTTCTGATTGGCCTCCGGACGTGACATCGCGGCCACGTCGCCGCTAGCTCCGGCTCTCTTTAGGCG
AGACCTCGACGGGGAGTCCCCGTCTCGGCCTCGGGGCTACACGAACACGAGAACTGACTGATGTAAACAAAAT-------
-----------------------------------------------------CTCAATTGCATGAGGAATAAATGTGTA
AGTAACAAAATGGAACTTCGAGTTACTGATGGAGACATGTCGGCGATCTCGACCGAGCAGCGCCATTGCTGGAATTCTTC
TTCCCCACGCGGCACATACCCTTTTTGTGGTGGTTGACAAG-------TTTTTTTTT--GGGAATGATGGTTGACAACTA
ACCGACAAATCCTTGCAGCAAATAGGAATGCGCTGCGTACCCTAGATCTTGGCCGGCCCAACAAGGCCTATGAGGACTTA
TTTATTTGTTTATTTATTTGCTTTTTACCTAGATAATGTTCTATTTTCTCAACAAAAA-AACACTTTTACCTACACCTAG
TTTGGCTCCCTATAATTTAACTTTGATTTATTCAATTTATGCTAGAATATGAAATTGATTCTGAAAGAGTTTAATTTCAA
TATTTTACTC----------------------------------------------------------------------
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>chr4A_148
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-------------------------------------------------------------------ACATAGCCGAAAG
CATGCAATTAATATTTTCTATATATCACAACTCATTAATACAAAATATCCAGATTTTTAGGTATATAAATTAAACATCAG
ATATTTT-ATGAAAGATAGATTTATTATATGCATCTTATACATTTTTTTATTAATAACTTGTACTCCTACATACAAAAGG
TATCGGCCAAGATTGTATCTTGAAGATTGTTCATATCTAGTAAACCATATTGTCTTTTGGAA-CAGTGTGAGTATTAGTT
TATTCATCATGATTATGATGACCG--------------------------------------------------------
------------------------------------------------------------------TGTCAAAATCTAAA
ACGTAGAATCAAC---CTCAAGTTCAGGTCGAAACTCGAAATTTATATTGAGAGACAGAAAAAGGTAAATTCAGATGTGA
ATAGTGTCAAATGTTGTTTTTGGTCTTTTTATGACACTATCCATGCTAGATTTCACATTTTTGTTTCTTAATGTACATTT
AGAGTTTGGACCTGGAATTTTTAGAAGTTGTAGTCACATTCCTTGTAAACATTCATATTTTTTCCATAGTTTTTTAAAAC
ATTTAAAATTGATCTTTTTTTTAAGTTGGAGCATGTGGAGCACCCCAAGGATGGGAGCGCCTGATATTTCCCCCTTTCTT
AGATCACTCTTACTCT-GAGTAATCTTAGATCACTCTAAGTAATCTTGCAGTTTCCTGTCAAATCAGCCAGGCAGAAAAA
GTTGAACTATGTGTACTCATTTAATGGCGTACATCCGAATGTGCTGGCACCATTAAGTGAGCACACTCTAAATGACAGCA
TATCACCTGATTTGGATTCGAATAAAGCACTAAATGAGAGCATATCTGGCACCACATTGCAGATTGCAGTACTAACTGAC
TGTAT--GGCTGCATCACACTGTCGAGTAGGAAACGCAGTCGAGTAAGCAACCGCCGCGTCTGACCGTGACTTCGCCGGT
GACCGGTCACGTGCCCGCCCGTCCTATAAACACAGCCGCTCCATCAGAGTCGACCAGACCAAAGCCTTCTGCCAGTCGCT
CGTTGTCACTCGACAGTCGACACCATGTGGAACAACGGGGCGATGAGCGGCCAAGTTTACCCGCCGCCGCCGGCGGCGAT
GGTGCCGCAGCCGCAGCCGCACGGGCAGGTGGCCGCGAACAACTGGGCGGGCAACGACGCCAACACGCTGCTGGTGGTGG
CGACGCTGATCACCACGCTCACGTACCAGCTCGGGTGCAGCGTCCCCGGCGGGTACTGGCAGGACACGCTGGCGGCGGAC
GGCAAGCAGCAGCCGCACGAGGCCGGAGACCCCATCATGCGCGACAAGCACCCGCAAAGGTACGCACATGGCGCATGCTC
CTGGTTAGAAACTTAGATTCTGA----AATCCCGGTGGTCATGCGGACGTCCCTTGACCGATGGCACGCATGCGTGCAGG
TACTGGGTGTTCATGGCGGCGAGCTGGATGGGGTTCCTGGCGTCCATGATGATGACGCTGAGCCTGCTGGTGCGCCTGCC
GGTGGACTCGCGGCAGGTCCGGTGGTCCTTCGCCGTCGCCTACTCCAGCCTGGTGCTCACCTTCATCGTGTCGCAGGCCA
AGACGCACATCTCAGTCGACATCGCCATCTGGTTGGTCACCGTCGTCTTCCTGTGGCTCATGATCAGCGTCCGCCCTGAG
CACCGGGCGCGTATCCTCCGTTTCTTCTGCTGCGACCGCGAGAACTGACGCCCCAAGCTT-AGTGTTCTCATGTCTTTGT
CGAGTATAAACTGCTGTGAGTTCAGAACTTTTTTGTCGTCTAAAAAGTTCAGAAGTTGTAAACTTTGTTTAGACTCGGAG
TAATAACAAAAGGG-AACGCCTAA-------------------------TCTTTCAGTCGATTTTGTCAAAGCCGTTTGG
ATTTACTG---GTTCGTCCTCCTTCCGCCAGCCACTATCCATCTTCCTCCTCCCGCTAGTCGACATTCTGCCGAGCCTGA
CCGCGTGCGGCCCAGCCTTGTTTGACCTGATCATCCCTCTAAACCC------------------------------CGCA
CTCAAACAATCGAGCTTCTGATTGGCCTCCACAGGTGACATCGCGGCCACGTCGCCGCTAGCTCCGGCTCGCTTTAGGCG
AGACCTCGACGGGGAGTCCCCGTCTCGGCCTCGGGGTTACATGCACACGAGAACCGACCCATGCAAACAAAAC-------
-----------------------------------------------------CTCAATTGCATGAGGAATAAATGTGTA
AGTAACAAAATGAAACTTCAAGTTGCTGATGGAGACATGTCGGCGATCTCGACCGAGCAGCGCCATTGCTGGGATTCCTC
TTCCCCACGCGGCACATACCCTTTTTGTGGTGGTTGACAACCTTTTTTTTTTCTTTT--GAGAATGATGGTTGACAACTA
ACAGACAAATCCTTGCAGCAAATAAGAATGCGCTGCGTACCCT-GATCTTGGCCGGCTCAACAAGGCTTATGAGCACTTA
TTTATTTGTTTATTTATGTGCTTTTTACCTAGATAATGTTCTATTTTCTCAACAAAAAAAAAACTTTTGCCTACACCTAG
TTTGGCTCCCTATAATTTAACTTTGATTTATTCAATTTATGCT----TATGAAATTGATTCTGAAAGAGTTTAATTTCAA
TATTTTACTC----------------------------------------------------------------------
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>chr4B_1046
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-------CAGCAGCAGCTCGGCGGGCAGGGAC---CGAACACCTGGGTCGGCAACGACGCCAACACGCTGCTGGTGGTGG
CCACGCTGATCACCACGCTAACCTACCAGCTCGGCACCAACATCCCCGGCGGGTACTGGCAGGAGACAAAGTCGCTGGAC
GGCAGGGAGCTGTACCGCGCCGGC---GACCCCATTATGCGCGACCTGCACCGCCCAAGGTACGCGCGCGCCGTGAAAAC
CACTCGATCGGTCGTT-----CATGCCAGTATCGGTTGACATGCCGGAT------------------------GTGCAGG
TACTGGCTGTTCATGGCGGCGAGCTGGGTTGGGTTCGCGAGCTCGATGGTGATGACGCTGAGCCTGCTGGTGCGGATGTC
GGCGGACTCGCGGCACGTGCGGTGGTCGTTCGTGGTGGCCTACTCCAGCCTCGTGCTCACCTTCGTCGTGTCGCAGCCCA
GGACGCACCTGTCGATGGACATCCTCGTCTGGGCGGGCGTCCTCGCCTTCCTCTGGCTCGTCATCAGCGTCCACCCGGAG
CACCG---------------------------------------------------------------------------
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>chr4A_1046
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-------CAGCAGCAGCTCGGCGGGCAGGGAC---CGAACACCTGGGTCGGCAACGACGCCAACACGCTGCTGGTGGTGG
CCACGCTGATCACCACGCTCACCTACCAGCTCGGCACCAACATCCCCGGCGGGTACTGGCAGGAGACAAAGTCGGTGGAC
GGCAGGGAGCTTTACCGCGCCGGC---GACCCCATCATGCGCGACCTGCACCGCCCAAGGTACGCGCGCGCCGTGAAAAC
CACTCGATCGGTCGTTCATGCCATGCCAGTATCGGTTGACATGCCGGAT------------------------GTGCAGG
TACTGGCTGTTCATGGCGGCGAGCTGGGCTGGGTTCGCGAGCTCGATGGTGATGACGCTGAGCCTGCTGGTGCGGATGTC
GGCGGACTCGCGGCACGTGCGGTGGTCGTTCGTGGTGGCCTACTCCAGCCTCGTGCTCACCTTCGTGGTGTCGCAGCCCA
GGACTCACCTGTCCATGGACATCCTCGTCTGGGCGGGCGTCCTCGCCTTCCTCTGGCTCGTCATCAGCGTCCACCCGGAG
CACCGCACGCGCAT------------------------------------------------------------------
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>SNPs
--S------------S-----------------------------SSS--------------------------------
------S----------S-------------------S--SS-S----S-SSSSS-------------------------
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-------S------------------------------------------------------------------------
---S---S------------------------------------------------------------------------
-------------------------------SSSSSS----------S--S------------------S---------S
--------------S---S----------------------S---------S----------------------------
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-------------------S------------------S-------S---------------------------------
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----------------------------------S---------------------------------S-----------
--S-----------------------------------------------------------S-----------------
--S---------------S-----------------S-------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------S--------------------------------------------S--------
------------------------SSS--S--------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------S----------------------------------
----------------------------------------------S---------------------------------
--------------S---------------------------------------------S--------S----------
--S-----------------------------------------------------------------------------
------------------------S-----------------S-------------------------------------
------S-S-SSSSSS---------S------------------------------------------------------
-S------------S------------------------------S-------------S--------------------
----------------------------------------------------------S---------------------
------------S------------S-----------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S----------SS
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--------------------------S------------------------------SS--S---------------S--
----------------------------------------S-------S-------------------S-----------
-------------------------------S-S-------------S----S---------------------------
----------------------------------------------------------------------S---------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_480
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------------------------------------------------------------CATCCGACATATGCATGCGT
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>reverse_2167
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------AGGTACGCAATCCTTCTGCC------------------------------------------------------
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