>input_sequence_72945
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ACAC
--CAAGACAACCAACTG-CCCCACACACACGCACACATCAAGC-GCAGCGCAGC------TCGATCGATCCGGCAGCTAG
GTAGCTATG------GCCGGGAGGAAGGT---GATGAGCAACGCCGGCGTCGCGGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGGCCGGGATTCATGTCTGCAACGTGGACACCGGGAGCATGGTGAACAACTGCAGGTCCTACT
GCACGGTGGGCAGCAACGAGGCCAGTCCCAGCGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGC
AAGTACAAGGGCCTGCTGTCTAAGGACATCGACGCCAACCGCGTCATGCAGATCCCAGCCAAGTGCGGCTACGGGGCGGC
CTCCTGCTAGTCACG------CATTAT--GCAGCTCGATTCGCGCCGGCCGACGCGGTCCGCCGCCGGTCGCCGGTTGCA
CGAGTAAATCGTAACGTCGTATTTTGATGTCAACTTTCACTCGTTCGTAGGAGT--ACGTACGTTCTGGTCGGCTCGCTG
ATCCTAT----------CGTGCG----TGCGTGCTTTGTGTTGGCCATGCATGC---TAC------CTTTGTATCCTCTT
CCGCTTTTCGTAAGTCATGTTGCTGTGTGTCCACAACTATGTGGCAGAAATAAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3B_1_TraesCS3B01G455200
GGTTAGCCGTTTTAATGCGGCGTAGCAGCCGGAGTTGGTTCCTCGGGAAGCTGCGTCCGCATTGAAGCGGCGGCTCCTGA
GTCGTTGTGTAGTATTATGTTACCATCACATAACGCTTCTCAAGAAAAGTTGAGTCTACAAGCTAATAGATGCAACCATA
TATGGTACTTACCTATATGACACTTTGTACTATGAAGATGGTAACATAGACTCCAAACACATCTCTCCCCATTAACTAGC
TGCCATATAGGTAAACTTGTCTTGGGATGTGTTAGGCTAGTCATAGTGGGGAGTAACTTACACTAGTGTCATGCATATGA
CACTACTCTATATTACTATTTTTATGTGGATAACGAGTA---------ATTGCTATCTTGTTACACAGATGAAACTTTTG
ATTCAAATTTGATATTTTTCGAACTTTCACCTGTCCTTTTTCCTAAAGAAACATCGGTGGTTCTTCTCTTTTGCTCTCTT
TCCTCGTCTGTTCCTCGGTTTGCTCCGGTACGGGTC-AATGTCTATGTCATGACCTCACCTTCAGGAATCTCTCCCATCG
TCACTTTGGTTCTTTCCGGGACAA---AAGATCTCCACCACGTCAGACAACC----TACCTCTTGTAGAAACATTGTTCA
ACACGGTTCTTGCTTGGAGACATGACGAGAACCTCAAAATAGTAGTCCTCCAAAAGTTGGTTGATTACTGCTGGTGGCGG
TCTCAATCTTCTTCAAGTGTCACTAGCTAGTGGAGCACTTGTCCAACTAGTAGTGGCTGCTGTCTGCCGCCTCTT-CTCC
TCTAATTGTC--TGCACCGCTTTCACAGTCAACGGTCTCATGCCAGTCCCTTGTTGAGACAATCATATGCACACTGTTAG
---TACTTCTCAAACAAGAAAAAACAAAGAATTACTCGTCTCTCCATTGATAGCATCTTCTAGGAAATTACATGAGCGAC
GCGGCCAAATGCACGTCGTCGCGGG-----------CCACGCTATATAAGCCCTAGCCATCA--CCCAAACGTGACACAC
--CAAGACAACCAACTG-CCCCACACACACGCACACATCAAGC-GCAGCGCAGC------TCGATCGATCCGGCAGCTAG
GTAGCTATG------GCCGGGAGGAAGGT---GATGAGCAACGCCGGCGTCGCGGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGGCCGGGATTCATGTCTGCAACGTGGACACCGGGAGCATGGTGAACAACTGCAGGTCCTACT
GCACGGTGGGCAGCAACGAGGCCAGTCCCAGCGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGC
AAGTACAAGGGCCTGCTGTCTAAGGACATCGACGCCAACCGCGTCATGCAGATCCCAGCCAAGTGCGGCTACGGGGCGGC
CTCCTGCTAGTCACG------CATTAT--GCAGCTCGATTCGCGCCGGCCGACGCGGTCCGCCGCCGGTCGCCGGTTGCA
CGAGTAAATCGTAACGTCGTATTTTGATGTCAACTTTCACTCGTTCGTAGGAGT--ACGTACGTTCTGGTCGGCTCGCTG
ATCCTAT----------CGTGCG----TGCGTGCTTTGTGTTGGCCATGCATGC---TAC------CTTTGTATCCTCTT
CCGCTTTTCGTAAGTCATGTTGCTGTGTGTCCACAACTATGTGGCAGAAATAAAACTTGTTTCCCGCGTCTCTCTATATA
GA------TTTTTTTATCATCTATTAATAATGCCAATAAGTTATACTCCCTTCATTCCACAATGTAGTGCCTATAGTACA
TTTTTCTAGTGGCTAGACTGGATTTCCTGGGCGATGCATTTGGCGGTCGACCGAGTTTTTGATGTGACTTTGTAATCTCT
AATAGTTGGTGCGCTTACAACGAAGGGATGAGAAAATGCAATCTACTCCCTTCATTCGGAATTACTTGTCACAAAAATGA
ATGTATCTACAACTA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AAATACATCTAGATACATTTATTTTTGAACGAGAAATTCCGAACGGAGGGAGGGAGTATA---------
--------------------------------------------------------------------------------
----------------------------------TATGTACGCGGCCCACTGGATGAACC--TAGGCAATCCATGTTTGG
TTCACGGGTGTCGGCACGACACGTCAGTCAGTTTTTGATCATCAACGGGTCGCCTCAGCAGCCGTATAAATGGCACTGCA
CTCCACTCCACTAGCACAAGTGGAGCTGCTGCATGTGTCAAGACCGATCGATGCAAGGAAATTTCCAAGGCTGCATGAAT
GGTAGTACCGCACTCCACTCCACTAGCACAAGTGGCAGTTTCCAAGGAGACTCTTCTTCAAAGAGACGAAGACCCCCGTG
TCGCTCTCCTTTGTAAGACAATAGGTTTGGGGGAACTGGCTCAACCCTCTAGGGGTGGCCTATCACATATATATAATGAA
GGGGTACAACGTTACATCATACATGCACATATACAGAAGCTATACAGTCTAATATCCTCCCTTAATCTTAGCCACTTTCT
AAAAATCTAGAAGGGTAAGATTGCGCCGACAATTCTCAAACTGTGGCAGAGGTAACGGCTTGGTGAAGATGTCTGCAAGT
TGATCTTTGGAAGAGATGAACTTGATCTGTAGTTGCTTCTGAGATACCCGTTCCCGTACAAAATGATAGTCCACTTCGAT
GTGTTTCGCTCGGGCATGAAATACCGGATTAGCAGATAGGTATGTAGCACCGATGTTATCA
>chr3D_1
GGTTAGCCGTTTTAATGCGGCGTAGCGGCCGGAGTTGGTTCCTCGGGAAGGTGCGTCCGCATTGAAGCGGCGGCTCCTGA
GTGGTTGCGTAGTATTATGTTACCATCACATAACGCTTCTCAAGAAAAGTTGAGTCTACAAACTAATAGGTGCAACCATA
TATGATACTTACCTACATAA------------------------------------------------------------
----------GTAAACTTGTCTTGGGATGTGTTAGACTAGTCATAGTGGAGCGTAATTTACACTAGTGTCATGCATATGA
CACTAGTCTATGTTACTGTCTTTATGTGGATAATGAGATTGGGAGATAATTGCTATCTTGTTACACAGAAGAAAATTG-G
ATTCAAATTTGATATTTTTCGAACTTGCACCTGTCCTTTTTCCTAAAGAAACATCGGTGGTTCTTCTCTTTTGCTCTCTT
TCCTCGTTTGTTCCTCGGTTTGCTCCGGTACTGGTC-AACGTCTATGGCATGACCTCACCTCCATGAATCTCTCCCATCG
TCACTTTGGTTCTTTCCGGGACAATAAAAGACCTCCACCACGTCAGACAACCTACGTACCTCTTGTAGAAACATTGTTCA
ACACGGCTCTTGCTTGGAGACATGACGAGAACCTCAAAATAGTATTCCTCCAAAAGTTGGTTGATTAGGTA-----GCGG
TCTCAATCTTCTTCAAGTGTCACTAGCTAGTGGAGCACTTGTCCAACTAGTAGTGGCTGCTGTCTGCCGCCTCTTTCTCC
TCTAATTCTC--TACACCGCTTTCACAGTCAACGGTCTCATGCCAGTCCCTTGTTCAAACAATCATATGCACACTGTTAG
---TACTTCTCAAACAAGAAAAAACAAAGACTTACTTGTCTCTCCATTGATAGCATCTTCTAGGAAATTACATGAGCGAC
GCGGCCAAATGCACGTCGTCGCGGGCCACGCTACCCCCACGCTATATAAGCCCTAGCAATGG--CCCAAACGTGACACAC
--CCAGATAATCAACTGCCCCCCCACACACGCACACATCAAGC-GCAGCTGACCCACCAGTCGATCGATCCGGCAGCTAG
CTAGCCATGGCCATGGCCGGGAGGAAGGTGACGACGAGCAACGCCGGCGTCGCGGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGGCCGGGTACCATGTCTGCAACGTGGACACGGACAGCCTGGTGAACAACTGCAGGTCCTACT
GCGCGGTGGGCAGCAACGAGGCCAGCCCCAGCGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGC
AAGTACAAGGGCCTGCTGCCCAAGGGCATCGACGCCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGGCGGC
CTCCTGCTAGTCACG------CACTAT--CCAGCTCGATTCACGCCGGCCGACGCGGTCCGCCGCCGGTCGCCGGTTGCA
CGAGTAAATCGTAACGTCGTATTTCGATGTCAACTTTCACTCGTTCGTAGGAGT--ACGTACGTTCTGGTCGGCTCGCTG
ATCCGAT----------CGTACG----TGCGTGCTTTGTGTTGGCCATGCATGC---TACTCCTACCTTTGTATCCTCTT
CCGCTTTTCGTAAGTCATGTTGCTGTGTGTCCACAACGATGTGGCAGAAATAAAACTTATTTCCCGCGTCTTTCTCTATA
TGTTAGATTTTTTTGATCATCTATTAATAATGCCAATAAGTTATA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3A_355
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GAGATAATTGCTATCTTGTTACACAGACGAAACTTTTG
ATTCAAATTTGATATTTTTCAAACTTGCACCTGTCCTTTTTCCTAAAGAAACACCGATGGTTCTTCTCTTTTGCTCTCTT
TCCTCGTTTGTTCCTCGGTTTGCTCCGGTACTGGTCAAACGTCTATGGCATTACCTCACCTTCATGAATCTCTCCCATCG
TCACTTTGGTTCTTCCCGGGAC---AAAAGACCTCCACCACGTCAGTCAACCTAA----CTTTTGTAGAAATATTGTTCA
ACACGGCTCTTGCTTGGAGACATGACGAGAACCTCAAAATAGTATTCCTCCAAAAGTTGGTTGATTAGGTA-----GCGG
TCTCAGTCTTCTTCAAGTGTCACTAGCTAGTGGAGCACTTGTCCAACCAGGAGTGGCTGCTGTCTGCCGCCTCTTTCTCC
TCTACTAATTCTTACACCGCTTTCACAGTCAATGGTCTCATGCCAGTCCCCTGTTCAGACAATCATATGCACACTACTAC
TCCTACTTCTCAAACACGAAAAAACAAAGAATTACTCGTCTCTCCATTGGTACCATCTTCTAGGAAATTACATGAGCGAC
GCGGCCAAACGCACCTCGTCGCGGGCCACGCTACCCCCACGCTATATAAGCCCTAGCCATCG--CCCAAACGTGACACAC
ACCCAGACAATCAACGG-CCCCCCACGCACGCACACATCAAGC-GCAGCTGATCCCCCAGTTGATCGATCCGTCAGCTAG
CTAGCCATGGCCATGGCCGGGAGGAAGGTGACGACGAGCAGCGCCAGCGTCGCCGCAGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGGCCGGGATTCATGTGTGCAACGTGGACACGGGGAGCATGCTGAACAACTGCAGGTCCTACT
GCTCGGTGGGCAGCAACGAGGCCAGCCCCAGCGGCGCGTGCTGCGGCGCGGTGCGCGGCGCCAACTTCAAGTGCCTCTGC
AAGTACAAGGGCTTCCTGCCCAAGGACATCGACGCCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGCCGGC
CTCCTGCTAGTCACC------CACTACCAACAGC----------------------------------------------
-----------------------TTGCTACCAACTTTCACTCGTTCGTAGGAGTGTACGTACGTA----------GGTTG
ATCTGAT-----------GTGCG----TGCATGCTTTGTGTTGGCCATGCATGC---TA---CTACCTTTGTATCCTCTT
CCGCTTTTCCTAAGTCATGTTGCTGTGTGTCCACAACTATGTGGCAGAAATAAAACTTATTTCCCGCGTCTTTCTCTATA
TGTTAGATTTTTTTGGTCATCTATTAATAATGCCAATAAGTT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3B_963
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACGCTATATAAACACTAGCCATCG--CCCAACGTG---ACAC
ACCCAGACAACCGACTG-CCCCCAACACACGCACACATCAAGC-GCAGCTGATCCACCAGTCGATCGATCCGACAGCTAG
CTAGCCATGGCC---GCCGGGAGGAGGGT---GATGAGCAACGCCGGCGTCGCTGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGGCGGGCGCGGCCGGGTACCATGTCTGCGACGTGGACACGGACAGCATGGTGAGCAACTGCAGGTCCTACT
GCACGGTGGGCAGCACGGAGGCCAGTCCCAGCGGCGCGTGCTGCGGCGCGGTGCACGGCGGCGACTTCCACTGCCTCTGC
AAGTACAAGGACGTGCTGCCCAAGAACATCGACGCGAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTACGGGGCGAC
CTCCTGCTAGTCA--GTCACGCACTACCAGCAGCTCGATTGGCGCCGGCCGACGCGGTCCGCCGGC---CGCCGGTTGCA
CTAGTAGATCCTACGTAAGG-------TGTTAACTTTCACTCGTTCGTAGGAGT--AAA---GTTCTGGTCGTCTGGCCG
ATCCGATCGTGCTCCTGCGTGCG----TGCACGCTTTGTGTTGGCGATGCATGC---TA---C---CTTTGTATCCTCTT
CTGCTTTTCGTAAGTCATGTCGCTGTGTGTCTACAACCATGTCGCAGAAATAAAACTTGTTTCCCG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3D_963
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACGCTATATAAGCCCTAGCCAATCGCCCAAACGTG---ACAC
ACCCAGACAATCAAGTG-CTACACACACACACACATTCAT--------------CACCAGTCGATCGATCCGACAGCTAG
CTAGCCATGGCC---GCCGGGAGGAAGGTGACGATGAGCAGCGCCGGCGTGGCCGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGACCGGGTACCATGTCTGCAACGTGGACACGGACAGCCTGGTCAACAACTGCAAGTCCTACT
GCACGGCGGGCAGCTCGGAGGCCAGTCCCAGCGGCGCGTGCTGCGGCGCGGTGCGCGGCGGTGACTTCCACTGCCTCTGC
CAGTACAAGGGCGTGCTGCCCAAGAACATCGACGCCAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTACGGGGCGGT
CTCCTGCTAGTCA--GTCACGCACTACCAGCAGCTCGATTGG--------------------CGCCGGTCGCCGGTTGCA
CTAGTAGATCGTACGTAAGG-------TGTTAACTTTCACTCGTTCGTAGGAGT--AA----GTTCTGGTCGGCTGGCTG
ATCCGATGGTGCTCCTGCGTGCG----TGCACGCTTTGTG----------------------------TTGTATCCTCTT
TTGCTTTTCGTAAGTCATGT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3A_963
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACGCTATATAAGCGCTAGCCATCG--CCCACCGTG---ACAC
ACCCAGACAACCGACTG-CCCCCCACACACGCACACATCAAGCAGCAGCTGATCCACCAGTCGATCGATCCGACAGCTAG
CTAGCCATGGCC---GCCGGGAGGAAGGTGACGATGAGCAGCGCCGGCGTGGCCGCCGCGCTGGTGGCGCTGCTGGTCGT
GGCGGCGGCGTCGGGCGCGGCCGGGCTCAGGGTCTGCAGCGTGGACAGGGACAGCGTCGTCAACAACTGCAAGTCCTACT
GCACGGTGGGCAGCACGGAGGCCAGCCCCAGCGGCGCGTGCTGCAACGCGGTGCGCGGCGGCAACTTCAAGTGCCTCTGC
CAGTTCAGGAACGCGCTGTCCCCGGACATCGACGGCAACCGCGCCATGCAGATCCCCGCCAAGTGCGGCTACGGGGCGGC
CTCCTGCTAGTCACCGTCACGCACTAT--GCAGCCCGATACGCGCCGGCCGCCGCGGTCCGCCGCCGGTCGCCGGTTGCA
CCAGTAGATCGTAACGTGGTGTTTTGCTGTCAACTTTCAGTCGTTCGTAGGAGT--ACGTACGTTCTGGTCGGCTGGCTG
ATCCGAACGCGCTCCTGCGTGCGTGCATGCATGCTTTGTGTTGGCCATGCATGCTAGTA---C---CTTTGTATCCTCTT
CTGCTTTTCGTAAGTGATGTTGCTGTGTGTCTACAACCATGTCGCAGAAATAAA-CTTGTTTCCCG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3A_1739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATAGTACA
TTTTTCTAGTGGCTACGCTGGATTTCCTGGGCGATGCATTTGGCGGTCGACCGAGTTTTTGACGTGACTTTGTAACTAC-
-----------------------------GAGAAAATGCTATTTCTTGTCTCCGTTTCAAAATAAATGTCTCAAGCTTAG
TATAATATTTTTTTTCAAAAAAAAAGCTTAATATAATTTTGCACTGAATTTTGTATATAGTCGAGACACTTATTATTTTA
GAATGAAGGAGTATATACTGTCTTCGGTCCTTTTTACTCAGCATATTAGGTTTGTCTGAAGTCAAACTCTTCAAAGTTTG
ACCAAGTTTATACAAAAAATTATTAACATTTATATGTCAACACCAATATCATTAGAACCATCTTGGAATATATTTTCATA
TTATACTCATTAGGTATTATAGATGTTAGTATTTTTTAATATAAATTTGGTTAAACTTAGCAAAGTTTGACTTCAGACAA
ATTTAATATGCAGAGTAAAAAGGACCATAGGGAGTATGTACGCGGTCTACTGTTTGAACCCATAGACAATGCATGTTCGG
TTCACGGGTGTCGGCGCGACACGTCAGTCACTTTTTGATCATCAACGGGTCGCCTCAGCGGCCGCATAAATGGCACTGCA
CTCCACTCCACCAGCACAAGTGAAGCTGCTGCATGTGCCAAGATCGATCGATGCAAGGAAATTTCCAAGGCTACGTGAAT
GGTA---CCGCACTCCACTCCACTAGCACAAGCGGCAGTTTCCAAGGAGCGTCTTCTTCAAAGAGACGAAGACCCCCGCG
TCGCTCTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>SNPs
--------------------------S-----------------------S-----------------------------
--S----S-----------------------------------------------------S-------S----------
----S----------S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-------------------------S-------------S-S----S-----------------------
-----S-----S-----S-S-------------S---SS------------------------------S----------
--------------------------S-----------------------------------------------------
-------S-----------------------S-------S-------S----------------S---------------
-------------------------------S------------------------------------------------
------S-------------------------------------S----------------------SSSSSSSSS----
--------------------------------------------------------------------------------
-------S-----S-----------------------------------------S------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
---S---------------------------------------------SS-S---------------------------
S----S--------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------S------------S-----------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------------------------------------------S---S----
SS------------S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS--------
---------------SS---------------------------------------------S------------SSS-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S-SS-SS--S-S--SSS--S--SS----S---SSS-SS
SSSS--S-SSSSS-S-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-S-S-SS--SSS--------S-S-S---SSS--SS--SSS-SSSSSSSSSS-SSSSSS---------
--------------------------------------------------------------------------------
---------------------------------------------S-S----SS-----------S----S------S--
---------------S--------------S----------------------------S----S---------------
-----------S----------S--------------S-----S----------------------------S-S-----
----SSS-------------------------S----------------SS---------------------------S-
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CTCATGCCAGTCCCTTGTTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AACTGTGGCAGAGGTAACGG----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
