>input_sequence_72938
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-------------------------------------------------------------ATCCGCTCACCCCACCTAG
CATGCAAGCATCAGCGACAATGGCCACCACCAACACCAAAGCCATAGTATCCCCCCGCGCCATCCTCCTCATCTTAATCC
TCATAGATATGGCTTCTGTCCAGGTGTGTGGTGACAACATACCACCTCCACCGATACTAGTTCCGCCACCATCTGTCCGC
GGCGGCCGATGCATGTTGAACGACGAAGTTGCATTCGCAGTGTGCGTCGACCTCCGATTGGGCACGACGAGCCCATCAGG
CATGGACATGTGTTGCCGGTGGATCCATGGAATGCCGAGCGCCGTGGACTGTTTGTGCTCTGCCTTCAAGCGGGCTGACA
TCCATGTCTCCGCCAGTGTTGCCGACGACATCAATGTTGTGCTTGCAGTCTGTGGCAAGGCTCTTGTCCCCGACCTTAAC
TGTTTCCATGGATCAGGCTAATCGCCTAGGCCTCATCGGTGATGCTTAATTAGTGTAGGCAAGCAGGCTCACACTATGAG
AGGTGCATCAGTGCACAATACGTCACCTATCAAATATATGTGTTTACTAAAAAGCATGCATATACTAGCATA--------
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-------------------------------------TACCAGTTTGGACCTAGGTTAACCAATGATACACATATGTTGA
TCATGGTTGCTACTAG----------------------------------------------------------------
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---------------------TGGTCTTCTAAATAAA-------------------------------------------
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>chr1D_1_TraesCS1D01G339500
GTCTGGAACCAGGCCGCTAGTTGGTGCAGGTGTGCGTCGCTGAAGCAGGAGGGTT-GGCATGCTAGAGGAACACCTCAGA
TATAGTCAGAATGATCATCCACAGAACCGCCAAAACGCGAAGAGGGGCATCAGAACAATGATTCAGTTGATCTGCTAGGA
CATCTGGTAGGAACGAAACAAGGCCACATACAGGAATAAATCTCCGGCAGTTAGCAAGATCATT-GAGCAATTCGAATAA
ATTTGGAACAATGGTGTCTTGCTGGAGCTACGCAGATTCAGAGCCCCTTCGGGGACATCACGTGAAATTGTATCCGAGGC
ACGTAGGGAGGCGAGGGGCTCTTTTTTCCGTGTTTTCTGTCTATTTTCCTTTCCATGTGAT-ACTTGATCTACCCATGTT
TGCTGCCTTTCTTCTGCTAAATCAATGATAAGCCAGTCGTTGTGCTGGGTCTTTC----AAAAAAAGGCAGCAATGCAAT
GAAACACTACTATGCACTTGTGAAACATCTTGAACAACATTTATGCCAAATCTTTAATTGCACGTACCTCCGTGAAATAT
TTAAAGGCTGCTTTGTTAGCTTTTGAGGATATCAAATAGTTTGATCCGGTATGTTAAAGCCTGTTGGTGTTGTCTAGCTA
TTAGTTCACTTTACTTTTCACTCAAGGGTTTAGGCATGTTTTCTCCAAAATCGTGACATCACTTTGCATGTATCAGTTCT
A---TTTCATTCATACCAAAAGTCAGAGTTCCACCATGGTTCCCAAAAAAAATCCTAAAATTTAATGAGAACATGGAAAT
TCTTGGCTTGTACTTGCAATGTACCTTTGGTACCAAAGCAATATTTCTTGCTCGTATGGTTGTACTAATTAAGATCATGG
AAAAGAGCTAAATTAGTGAGAGCCCACA-----------CATAATTATTCAGGATCTGTACGTGCACGAGTACTGATCAT
CTCGCCAAAACAATTTCATATTTATCCTATAAATTTATTCTTTGCATACACACCAACATCCATCCGCTCACCCCACCTAG
CATGCAAGCATCAGCGACAATGGCCACCACCAACACCAAAGCCATAGTATCCCCCCGCGCCATCCTCCTCATCTTAATCC
TCATAGATATGGCTTCTGTCCAGGTGTGTGGTGACAACATACCACCTCCACCGATACTAGTTCCGCCACCATCTGTCCGC
GGCGGCCGATGCATGTTGAACGACGAAGTTGCATTCGCAGTGTGCGTCGACCTCCGATTGGGCACGACGAGCCCATCAGG
CATGGACATGTGTTGCCGGTGGATCCATGGAATGCCGAGCGCCGTGGACTGTTTGTGCTCTGCCTTCAAGCGGGCTGACA
TCCATGTCTCCGCCAGTGTTGCCGACGACATCAATGTTGTGCTTGCAGTCTGTGGCAAGGCTCTTGTCCCCGACCTTAAC
TGTTTCCATGGATCAGGCTAATCGCCTAGGCCTCATCGGTGATGCTTAATTAGTGTAGGCAAGCAGGCTCACACTATGAG
AGGTGCATCAGTGCACAATACGTCACCTATCAAATATATGTGTTTACTAAAAAGCATGCATATACTAGCATA--------
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-------------------------------------TACCAGTTTGGACCTAGGTTAACCAATGATACACATATGTTGA
TCATGGTTGCTACTAG----------------------------------------------------------------
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---------------------TGGTCTTCTAAATAAAAAGGTAAGATATTTACTTGTTGTTGTATGTGGTATGTTCGCTG
CTCGCTCATTCTTTTGCATGATCATGTTTATGGAGATGGAGGCTGCACGAAATTTGTCTCACAACTTCTTTCGACGAACT
TTTTACTCGCAACGCGGTTTGACAAGTGAATCTGTGAGTGTAGGTCAAACTTTTCCATCACAAGCACCAATGTTCAAATA
TAAGATATACTACCTCCGTCCCGGTTTATAGGTCCCAAGAGCCAAAGCAGCCAGACCAAGGCAGAGTATCGGTCATCGCA
ATAACCAATCAGCGTTCATCACTTAAGGAAAGAGAGCACCA---------------------------------------
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---CATTGAGAGATGGCCTGGCATTTGCCAACTCTCTTGGTTTCAATCAGATTGAAGCGGAATCAGATTTACTTTAAGTA
ATTAATTTTTGTTCTGGTCATACAAGATGGTGGGATGAAGCTGCAGCACTATTTGCAGAATGTGTGGACATAGGTACTGC
AATTGGGGAGGTCATTTTTAAGCATTGTATTCGTTCATGTAATCAAGCGACTCATGTGCTAGCTAACTATGGTTTTTGTC
ACAAGTCTACTTGATTGGATGAGCCTCCTGACTTTATTGTCGGCACGCTCGTAAACAATGTAAACGTTTTCATGATTTAA
TAAAGTTAGCCATGATGGTCTTCCTAAAAAAAGCACCGCATTAATCGCTAGAAAATCGGGAGGGCCGCTTGCGTCCCTAG
ATTTTTGCCTCGGGCCCACATGCATGCCCAATCCTCTCG-----------------------------------------
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----------------TGCGGTTGCTGCATGCATTGGCTGGCAGAGAGAATCGCGCGTGTCAATTAATTAGGTGAGTTAA
TTCCAGCGTTTCGAATGCAATGTCGAATTAACAACTCCCGTGAATTGCTCACATGCGGCCTTGTAAATACGGACGCTATG
TGGTGGCTCGGGGTTCTATAAATCCGGACGGACTGGTTTGAGGAGCCTATGAGGGATACTGTTCATTTACTTATGGAAAA
AGTCCATTTTAAACCT
>chr1A_1
GTCTAGAACCAGGTCGCTAGTTGGCGCGGGTCTGCGAAGCTGAAGCAGGAGGGTTCGGCATGCTAGAGGAACACCTCAGA
TATAGTCAGAATGATCATCCACAGAACCGCCAAAATAGGAAGAGGGGCATCAGAACAATGATTCAGTTGATCTGCTGGGA
GATCTGGTAGGAACAAAACGAGGCCACATTCAGGAATAAATCTCCCGCGGCCAGCAACATCGTTGGAGCAATTCGAAGAA
ATTTGGAACAATGGTGTCTTGCTGGAGCTACGCAGATTCAGAGCCCCTTCGGGTACATCACGTGAAACTGTATCCGAGGC
ACATATGAAGGCCGGGGCCTCTTATCGTGT--TTTTCTGTCTATTTTCTTTTCCTTGTGATCACTTGATCTACCCATGTT
TTCCGCCTT-CTTCTGCTAAATCAATGATAAGCCAGTCGTTGTGCTGGGTCTTTT----AAAAAAAGGCGGCAATGCAGT
GAAACACTACTATGCACTTGTGAAACATCTTGAACAATATTTACGCCAAATCTTTAATTGCACGTACCTCCCTGAAATAT
TTGAAGGTTGACTTGTTAGCTTTTGAGGATATCAAATAGTTTGATCCGGTATGTTAAAGCCTGTTGGTGTTGTCTAGCTA
TTAGTTAATTTTACTTTTCATTCAAGGGTTTAGGCATGTTCTCTCCAAAATCGTGACATCACTTTGCATGTATCGGTTCT
AGTATTTCATTCATACGAAAAGTCACAGTTCCACCATGGTTCCCAAAAATAATCCTAAAATTTAATAAGAACGTGGAAAT
TCTTGGCTTGTACTTGCAATGTACCTTTGGTAGCAAAGCAATATTTCTTGCCGGTATGATTGTACTAATTAAGATCATGG
AAAAGAGCTAAATTAGTGAGAGCCCACGCTCGTTTGCGC--TAATTATTCAGAATCTGTATGTGCACAACTACTAATCAT
CTCGCCAAAACAATTTCATATTCATCCTATAAATTTATTCTTTGCATACGCACCAACATCCATCCGCTCCCCCGCCCAA-
CATGCAAGCATCAACGACAATGGCCACCACCAACACCAAAGCCATAGCATCCCCCCGCGCCATCCTCCTCATCTCAATCC
TCATAGGTATGGCTTTTGTCCAGGTGTGTGGTGACAACCTACCACCTCCACCGGTACAAGTTCCGCCACCATCTACCCGC
GACGGCCGATGCATGTTGAACGACGAAGTTGCATTCGCAGTGTGCGTCAACCTCCGATTGGGCAGGGCGAGCCCATCAAG
CAAGGATATGTGCTGCCGGTGGATCCATAGGATGCCGAGCGCCATGGACTGTTTGTGCTCTGCCTTCAGGCGGGCTGATA
TCCATGTCTACGCCAGTGTTGCCGACGACATCAATGTTGTGCTCGCGGTCTGTGGCAAGGCTCGTGTTACCGACCTTAAC
TGTTTCCATGGGTCAGGCTAATCGCTTAGGCCTCATCGGTGATGCTCAATTAGTGTAGGCAAGCTGGCTCACACTATGAG
AGATGCATCAGCGCACAATACGTCACCTACCAAATATATGTGCTTCCTGAAAAGCATGCATA--CTAGCATA--------
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-------------------------------------TAACAGTTCCGACCTAGGTTAACCAATGATACACACATGTTGA
TCATGGTTGCTACCAGTCAGTGGCGGAGCCAGGATTGGACAAAGTCCCAGGCCCAAAAGAAAAATTTTGCCACGAGGGAA
AATCTTAACGTTCATAAGGCTTTTAGCTACCTCAAAAGATACCCCACATAAAATATGGCTCCGTTGCTTGAAAAAATTAT
AATTTAGACTCAATGCTTAACAATACAATGAAATAGATAAAACTTCAAAGAACAGTACATGGTAAAAAAGAGTACCAAAT
CAATAGTCTACTTCATCAGTGCCACGCATAACCTCATCGACGCCGCTTGATTCCCCCCATCTGAAATGATAGGTGTAGAC
AGCCCCGTTGAGGACACCGGTGAAAAAAATCTCTTCATCTTCTTTTTCTACAATATATGAAATGAAATTGGCAGTTACAT
CAATTTGTGTTCAACAATATCATAGATATATGACTGGACACAAAAGAATATAGTATAAATTTCAGTTCAGAGCAGCTTGT
ATACTGATACAACTCGTAAAATTAAAACATGGTACAAGTAGAAAGCATCAAGGCGGAAACAAGGAAAGCATCAAAGAAAA
TTACAAGCTGCCGCAGCCGGCAATGAACCAGCGCCACGCAGGCGAACGACGAACAGAAGGGCGGCAACGGGTGACCTACA
GCCCGGGAGCAGAAAGTGGTTGGGCCGGGGGCGGAGCCACGGCAGACGGCGGCGCGGGCGTGGGTGTCCCTGCTGCTGCT
GGAGATCCATCGTGCCTTCAATGGTCTTCTAAATAAGAAGGTGAGATATCTACTTGTTGTATG-TGTGGTATGTTCGCTC
CTCACTCATTCTTTTGCATGATCATGTTTATGGAGATGGAGGCTCCAAGAAATTTGTGTCTCAAGTTCTTTCAACGAACT
TTTTACTCACAACGCAATTTGACTAGTAAATATGTGAGCGTAGGTCAAACTTTTCCATCACAAGCACCAGTGTTCAAACA
TAAGACATACATGACATTCGAAGTCTCACGGATCTGCATGACTAGAAATACCATATTTAATTGACGACCAGTTGTTTCCT
GGCACGAAATGACTGTTAAAAGAGATGGCGTTAGTCCATCTGGAATGGCCAATTGGCATCTCTGTCACAGAAAGATAAAT
ACAACATGGGAACCCAGCACAAGAGGTCTCAAAATGATGGCAGAAAATGCTATACCCATCGCCAAGGAGATAAGGTGGCT
ATGCATCGAAACACTACTATGAACTTGCAAAATGTCTTGAACAATATTTGCGTACGCCAAATCATTCATTGCACATACCT
CCCTAAAATACTTAAAGGCGACAATGTTAGTTTTTGAGGATATCAAATAGTTTAATCTAGTA------------------
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--------------------------------------------------TGTATCAGTTCTATTTCATTCATATGGAAA
GTCAGAGTTCCACCCTGCTTCACAAAAATAATTCTAAAATTTAATGAGAACGTCAAAATTCTTGGCATGTACTTGCAATG
TACCTTTGGTATCAAAGCACTATTTCTTGCTTGTATGGTTGTACTAATTAGGATCCTAGAAAGAGTTAAATCAATGAGAT
TAAACGTTCCTAAAATATACTTCCTCACTCGCGTGATCCATAATGTGTCATAATTTGTATGTACATGAGTACTAATCGCT
TGCCAAAACAATTTTGTATTTATTCTATAAATTTATTCTTTGCATATGCATCAACATCCATCCGTTCACCCACCCAGCAC
AAGAGCATCAGACAACGGCCACCACCAACACCAAAGCCATAGCATCCCCCTGTGTCATCCTCCTCGTCTCAATCTTCGTA
GATGTGGCTTTTGTTCAGGTCGGTGGCAACAGCCTACCACCTCCACCTGTAATGACACCGGTACAGGTTCTGCCACCATC
TGCCCGCGACGGCTAATGCATGTTGAACGACGAAGTTGTATTCGCAGTGTGCATCGACCTCCGATTGGGCAGACAAGCCC
ATCAGGCAAGGACATATGCTGCTGGTGGATTCGTGGGATGGCGATTGCCATAGACTGTTTGTGATATGTCTTCAGGCGAC
GCAACATCCGTCTCTATGCCAGTGTAGCCGACGATTCATTGTTGTGCTTGCAGTCTGTGGCAAGGCTCGTGTCCCCAACC
TTATCTGTCTCCATGGATCAGG----------------------------------------------------------
----------------
>chr1B_1
GTCTGGAACCAGGCCGCTAGTTGGCGCAGGTGTGCGTCGCTGAAGCAGGAGGGTTGGGCATGCTAGAGGAACACCTCAGA
TATAGTAAGAATGATAATCCACAGAACCGCCAAAACGCGAAGAGGGGCATCAGAA-------TCAGTTGATCTGCTGGGA
GATCTGGTAGGAACGAAACAAGGCCACATTCAGGAATAAATCTCCCGCAGTTAACAACATCATT-GAGAAATTCGATGAA
ATTTGGAACAATGGAGTCTG------------------------------------------------------------
-----------------------TTTTTCGTGTTTTCTGGCTATTTTCCTTTCCATGTGATCACTCG--------ATGTT
TGCCGCCTT-CTTCCGCTAAATCAATGATAAGCCAGTCGTTGTGCTGGGTCTTTCAAAAAAAAAAAGGCGGCAATGCAAT
GAAACACTACTATTCACTTGTGAAACATCTTGAACAATATTTACGCCAAATCTTTAATTGCACGTACCTCCATGAAATAT
TTAAAGGCTGCTTTGTTAGCTTTTGAGGATATCAAATAGTTTGATCCGGTATGTTGAAGCCTGTTTGTGTTGTCTAGCTA
TTAGTTCACTTTACTTTTCATTCAAGGGTTTAGGCATGTTTTCTCCAAAATCGTGACATCACTTTGCATGTATCAGTTCT
A---TTTCATTCATACCAAAAGTCTGAGTTCCACCATGGTTCCCAAAAATAATCCTAAAATTTAATGAGAATGTGGAAAT
TCTTGGCTTGTACTTGCAATGTACCTTTGGTACCAATGCAATATTTCTTGCTCGTATGGTTGTACTAATTAAGATCATGG
AAAAGAGCTAAATCAGTGAGAGCCCACATTTGCACGATCCATAATTATTCAGGATCTGTACGTGCACGAGTACTGATCAT
CTCGCCAAAACAATTTCATATTTATCCTATAAATTTATTCTTTGCATACACACCAACATCCATCCGCTCACCCCATCTAG
CACGCAAGCATCAGTGACAATGGCCACCACCAACACCAAAGCCATAGTATCCCCCTGCGCCATCCTCCTCATCTTAATCC
TCATAGATATGGCTTCTGTCCAGGTGTGTGGTGACAACATACCACCTCCACCGATACTAGTTCCGCCACCATCAGCCCGC
GGCGGCCGATGCATGTTGAACGATGAAGTTGCACTCGCAGTGTGCGTCGACCTCCGATTGGGCAGGACGAGCCCATCAGG
CATGGACATGTGTTGCCGGTGGATCCATGGAATGCCGAGCGCCGTGGGCTGTTTGTGCTCTGCCTTCAGGCGGGCCGACA
TCCATGTCTCCGCCAGTGTTGCCGACGACATCAATGTTGTGCTCGCAGTCTGTGGCAAGGCTCTTGTCCCCGACCTTAAC
TGTTTCCATGGATCAGGCTAATTGCCTAGGCCTCATCGGTGATGCTCAATTAGTGTAGGCAAGCAGGCTCACACTATGAG
AGGTGCATCAGTGCACAATACGTCACCTATCAAATATATGTGCTTACTAAAAATCATGCATATACTAACATATACTCCCT
CCGTTCAGAAATACTTGTCATCAAAATGAACAAGAGGGGATGTATCTAGACGTATTTTAGTTCTAGATACATCTTTTTTT
ATCCATTTTGATGACAAGTATTTTCAGACGGAGGGAGTACCAGTTTGGACCTAGGTTAACCAATGATACACATATGTTGA
TCATGGTTGCTACTAG----------------------------------------------------------------
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---------------------TGGTCTTTTAAATAAAAAGGTAAGATATCTACTTGTTGTTGTATGTGGTATGTTCGCTG
CTCGCTCATTCTTTTGCATGATCATGTTTATGGAGATGCAGGCTGCACGATATTTGTCTCACAACTTCTTTC-ACGAACT
TTTTACTCGCAACGCGGTTTGACAAGTGAATCTGTGAGTGTAAGTCAAACTCTTCCATCACAAGCACCAATGTTCAAATA
TAAGACATACTACCTCCGTCCCGGTTAATAGGTCCCAAGAGCCAAAGCAGCCGGACCAAGGCAGAGATCTGCTCGTCAAT
TCAAATATGGTATTTATAGTCATTCATATTTTAGGATCTGCTTGTCAATTCAAATATAAGACATACTATCTCCGTCCGGG
TTTACAGAGCCCCGAGCCACCACATAGCGTCCGTATTTACAAGGGCCAAAGCAACAAAACACTAG---------------
--------------TACTATGCACTTGTGAAACGTCTTGAACAATATTTACGCACGCCAAATCATTAATTGCACGTACCT
CCCTAAAATACTTAAAGGCAACACTGTTAGTTTTTGAGGATATCAAATAGTTTGATCCAGCATGTAGGCGTGTCGGTGAT
GGATAGCTAGTAGTTCATTTTACTTTTCACCCA-----------------------------------------------
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-------AGGGATTATGTTCTCTCCAAAAAAACTGCCATCAACTTTTGCTTGTATCGGTTCTATTTCATTCATATGGAAA
GTCAGAATTCCACCCTGTTTCCCAAAAATAATCCTAAAATTTAATGAAAACTTGGAAATTCTTGGCTTGTACTTGCAATG
TACCTTGGGTAGCAAAGCACTATTTCTTGCGTGTATGGTTGTACT-----------------------------------
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>SNPs
------------------------S-------------------------------------------------------
----------------------------------------------------------------------------S---
S----------------------------S---------------S-----------S-------------------S--
-----------------------------------------------------S-------------S------------
--S--S-S----SS---S---------S----------------------------------------------------
---S-----S-----------------------------------------------------------S----------
-------------------------------------S-----S---------------------------S--------
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--------------------S-----------------------------------------------------------
-------------------------------------------------S----------------------S-------
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---------------------------------------------------------------------------S----
----------------------------------------------------------------S---------------
--------------------------------------------------------------------S-----------
-------------------------------------------S------------------------------------
----------------------------------------------S---------------------------------
------------------------------------------S-------------------------------------
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-------------------------------------------------S------------------------------
------------------------------------------------------------------------S-------
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-----S--------------------S---------------------------------------SSSS-S--S--S-S
SS---S--SSSS-S--S-SS-S------SSSS--SS--S-S---------------------------------------
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------S--S-S-SSS-SSS---S----S--S-S-----SSSSSS--SS-SS-SSSS-SS-SSSSS-S--S-SSSS-SSS
SSSS-SSS-SS--SSS-S--SSS-S-S-S--SSSSSSSSSSSS--SSSSSS--SSSSS-S-S---S-S-S-SSSSSSSSS
SSS-S-SS--SSSS-SS--SSS-S--SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--SS--S---S---SS-S-------SSS--SSSSSSS-SSSSSSSS-SSS-SSSSSSSSSS--SSSSSSSS-S
S-SSSS-SSS-SSS-SSSSSSS--SSSSS------SSSS-----------------------------------------
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-------------------S-S--S--S--S-S-S--S----SSSSSSS--S-SSS--S-SSSS--SS-SSSSSS-SS-S
SSSSSSSSSS--SSSSSSSSS--SS-SSSS--S-S--SSSSSSS-SSS-SSSS-SS-SSSSSSSSSSSSS-SS-S-S-SS
-SS-SSS--SSSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_308
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------------------------------------------------TCGGGGACATCACGTGAAAT------------
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>reverse_3232
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-------------------------------CTTTATTGTCGGCACGCTCG-----------------------------
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