>input_sequence_72924
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----------ATGGCCGCGGCTGCTCCCACCCAGGCTCCGGCCATGACCCTGCCGGCCGCCATGGCCGCCAAGGTGGC--
----------GCCCTCGCCGAAGCCCACCGCCGCCGGCGACCGCAAGGTGGTGCCGGTGATGACCGACGCCGACGAGGTC
GTCGTCCAGGTCCAGGTCCAGGCGGAGCTGCACGTGCTCGCCGTCGACGACAGCGTCGTCGACCGCGCTGTCATCGCCAA
GATCCTCCGCAGCTCAAAATACAGAGGTGAGAAATCGAATCAATCC------AATCAAGCCGCGCTCCGGCAATTCTTCA
AGAAATTGGACGGCTACTCGATCCATCCTCGTC--GTACATGTTCTAATCTGCCTTG-TTCTATGTTGCAGTGACTACTG
TGGACTCTGCGACTCGGGCGCTGGAGCTGCTGGGCCTGGGGCTCATCACGGACGTGAACATGATCATCACCGACTACTGG
ATGCCCGGCATGACCGGGTACGAGCTGCTGAAGCGGGTCAAGGAGTCGTCGGAGCTCCGGGAGATCCCCGTGGTGATCAT
GTCGTCGGAGAACGTGCCCAACCGCATCACCCGCTGCCTCGAGGAGGGCGCCGAGGACTTCCTCCTCAAGCCCGTCCGCC
CCTCCGACGTCTCCCGCCTCTGCAACCGCATCCGGTGA------------------------------------------
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>chr2A_1_TraesCS2A01G551100
TAATCCGTTCCGCCCAGTGGTGGAAGGGAGATCACGCGACGCGATACGGCG-TGACGAGCGACCGGTCGGTGGCGGCCGG
CCGGCGTAAATGGCCCGTCCCGCCCGAGCGATCG---------------------C------------------------
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-------------GAATGAAATCCGGAGATCCTGCCATGCACGCACGCACGCACGGCACGACGTTGGTGGTGCGTTACGT
ACGTGGGCTGGGCTGGGAGT----GGAATGAAGGAAGGGAGAGATCGCGTGTGAG-----ATGGATCGGCAACAGCTGTG
ATGCAGGAGGAGGAGGGAGGGGCTCCTCGTATCGAAGGGGCAAGTGACCCTTCCACGCACGGAAGGAAACCAAACGAAG-
---CCG---------ATGATCTCACGAATCACGGGTGAATCTCTGAAATCAAGACGTATCGTGCCGCCGCTCACCCAAAA
A-GATCCACAATTTTGAAGCAAATCCCCGAGCCCACCCGGTACGGATCACCTGCTGCCGCCCGGAAAGACCAAATCAAAT
CCTCAGTTGCTAGCCGGATATAGTATAGCAGGAAG------------------AAAAACTAAAAAAAAAGTGATGCAGTT
TGTGCGTGCCCCATGCATGCAAATCTCATCTCCCCC--ACTTGCCCACACCCCAACGGAAGGAGAGAAAAGAAAAAGGGA
AG---AGAGAAGATACGCAGACAGCATACGGTGTGCGTGAGCGATGGAGGGGGTGA-------------CGCAGCGAAAG
CGAGGGGCTCGGCAGGAAAATCCCGGCGGGGATCTCCCGGGCTGGGCCGCGGGGCCCGCGGATCCGCGCCCGGATCGGGC
CGGGCCCCACC---GGGGGCTGGGTTTTACTCGATCCGCGAGCCTAGGATCCCTTTCGAGATCTCGCAGGATTTCCCCCG
CATTTATTTTCCGCTTCCCCCCCGCCCCTGTATATATACCGCCGCGCGTCGCGGCCAACCCAACCAACAC---------C
CAAACGCACCAATCTATTCAAGCCAAGAAGAAGAGCTCTTCGCCGTTCCATATTACTACTGCTTCTTCGGCGAGAGAGTT
TGATCGACTGATGGCCGCGGCTGCTCCCACCCAGGCTCCGGCCATGACCCTGCCGGCCGCCATGGCCGCCAAGGTGGC--
----------GCCCTCGCCGAAGCCCACCGCCGCCGGCGACCGCAAGGTGGTGCCGGTGATGACCGACGCCGACGAGGTC
GTCGTCCAGGTCCAGGTCCAGGCGGAGCTGCACGTGCTCGCCGTCGACGACAGCGTCGTCGACCGCGCTGTCATCGCCAA
GATCCTCCGCAGCTCAAAATACAGAGGTGAGAAATCGAATCAATCC------AATCAAGCCGCGCTCCGGCAATTCTTCA
AGAAATTGGACGGCTACTCGATCCATCCTCGTC--GTACATGTTCTAATCTGCCTTG-TTCTATGTTGCAGTGACTACTG
TGGACTCTGCGACTCGGGCGCTGGAGCTGCTGGGCCTGGGGCTCATCACGGACGTGAACATGATCATCACCGACTACTGG
ATGCCCGGCATGACCGGGTACGAGCTGCTGAAGCGGGTCAAGGAGTCGTCGGAGCTCCGGGAGATCCCCGTGGTGATCAT
GTCGTCGGAGAACGTGCCCAACCGCATCACCCGCTGCCTCGAGGAGGGCGCCGAGGACTTCCTCCTCAAGCCCGTCCGCC
CCTCCGACGTCTCCCGCCTCTGCAACCGCATCCGGTGATGAACCGTCTCTCGCCGCACCCGTGGATCATCTACGGAGGAG
GATTAATTCTTAAGTAGGA------TTTTTCATTCTTTTTTCTTCGGTGTTCTTT-CCATGGACATAGATCCGCCGCT--
-------TGCTGCCGCCTCAAACAACAGCTTAACTTTTTGGGGTCCTAGTA---GATGATGATGA-CTAGATTAGGATGT
TAGTTCGT----CCCCTTGTGTGCTCTGCTTCTTCAAAGATGCCAAGAAAAAAAAAATCAAAACAGAGTATTCATCCGGC
CAAAAGAAAGGAAATCTTCTGAATGAATGTTGTTCAGAGAAGTTTCCCATCTTGGCTAAATGTC------------GAAA
TGGCATCGGATCAGAGCAACATGTTGACAGTTCCATAATCAGAGCTAATCTTTTG--------CAACAATTAACCATCAT
CGTCTGTATCGCTTCTCCTTACTTAATCTGCACATGGTCGCCGCATGCAGTTCACGCATCTGCCTGCCCCTGATCATGCT
TTGTCT-GCCACGCGATACAATTTGG-ATGATTGATTGTTAAATAGCTCCGCTGA---------TGATGATGTCGACGAG
CTAATATACTAGCAGAAGCACAATCTTGATCGTACGTGCGTATCTCGTAAATGTACATATACAATGCT-TGTGGGTTGTC
TTAGGTGAGCTGTTGTTATACGCGGCGTATAAAAAAATG-AAAAGTCCAAAGGCCGG-AGCATATATGGAGGTAGGGAGA
TATGGTAATGAATGGGGGCACTGTGGAAGGATCTCCCCGGAGATCTGCTTACCTGGTGCCAGATTCTGCTTCCGCACAAG
GCGAGGTGAGGTGAGGTGTGGGAGCGCTGTATGTGGCCACCATGTGGC--------------------TGGATTAAACTG
GGAATAAACACGCGGATCAGGGAGAAGATATGGCGGATTGGTGCGTGCAGCTGTGTGTTAGTTA--TTAGGTTGGGTTCT
GATTTTACCTGATTCTGTGTCTTGTCTCGTGGAATGTCAAAGTCGGACATGTATGTGCGTATATATTATCTTTGATTT
>chr2B_4
TCCGTCCCG----CCTGTGTTGGAAGGAAGATCACGCGACGCGATACGGCAATGACGAGCGACCGGTCGGTGGCGCCCGG
CGTGCGTACATGGCCCGTACCGCCCGAGCGATCGCGGCGCGGAGGCCGACCGATCC------------------------
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-------------GAATGAAATCCGGGGATCCTGCCATGCACGCACG--------GCACGACGTTGATGGTGCGTCACGT
ACGTGGGCTGGGCTGGGAGTGAAAGGAAGGAAGGAAGGAAGAGATCGCGTGTGAGGTGAGATGGATCACCAGCAGCTGTG
ATGCAAGAGGAGGGTGGGA-----------ATCGAAGGGGCAAGTGACCCTTCCACGCACGGAAGGAAATCAAACCAAAC
CGCCCG---------ATGATCTCACGAATCACTGGTGAATCTCCGAAATCAATCCGTATCCTGCCGCCGCTCACCCAAGA
A-GATCG--AATTTTCAAGCAAATCCTCGAGCCCGCCCGGTACGGATCACCTGCTGCCGCCCGGAAAGACCAAATAAAAT
CCCAGCCAGCCGGCC-------------CAGAAAG------------------AAAAACTAAAAAAAAAGTGATGCAGGT
TGTGCGTGCCCCATGCACGCAAATCCCATCTCCTCCCCACTTGCGACTTGTCCAAG---AGAAGAGAAAAGAAAAAGGGG
GGAGAAGAGAAGATACGCAGAGAGCATACGGTGTGCGTGAGCGCGGGGCATACGAGTGACGACGACGGGCGGAGCGAAAG
CGAGGGGCTCGGCAGGAAAATCCCGGCGGGGATCTCCCGGGCTGGGCCGCGGGGCCCGCGGATCCGCGGCCGGATCGGGC
CGGGGCCCCACCGGGGGGGCTGGGTTTCGCTCGATCCGCGAGCCTAGGATCCCTTTCGAGATCTCGCAGGATTTCCCCCG
CATTTATTTTCCGCCTCCCCCC-GGCCCTGTATATATACCGCCGCGCGTCGCGGCCAACCCAACCAACAC---------C
GCATCAACACATCCATCCTTC-------AGACGAGTTCTTCGCCGTTACATACTACTACTCCTGCTGCTCCGGC-GAGTT
TGATCGACTGATGGCTGCGGCTGCTCCCACCCAGGCTCCGGCCATGACCCTGCCGGCCGCCATGGCCGCCAAGGTGGC--
----------GCCCGCCC------------CCGCCGGCGACCGCAAGGTGGTGCCGCTGATGACCGACGCCGACGAGGTC
GTCGTCCAGGTCCAGGTCCAGGCCGAGCTGCACGTGCTCGCCGTCGACGACAGCGTCGTCGACCGCGCCGTCATCGCCAA
GATCCTCCGCAGCTCAAAATACAGAGGTGAGAAATCGAATCAGTCCCAATCCAATCAAGCCGCGCTCCGGCGATTCTTCA
AGAAATTGGACGGCCGCTCGATCCATCCTCGTT--GTATATGTTCTAACCTGCCTTTCTTCTGTGCTGCAGTGACCACCG
TGGACTCAGCGACGCGGGCGCTGGAGCTGCTGGGCCTGGGGCTCATCACGGACGTGAACATGATCATCACCGACTATTGG
ATGCCCGGCATGACCGGGTACGAGCTGCTGAAGCGCGTCAAGGAGTCGTCGGAGCTCCGGGAGATCCCCGTGGTGATCAT
GTCGTCGGAGAACGTGCCCAACCGCATCACCCGCTGCCTCGAGGAGGGCGCCGAGGACTTCCTCCTCAAGCCCGTCCGCC
CCTCCGACGTCTCCCGCCTCTGCAACCGCATCCGGTGATCAGCCACCGGAAGCCTCGACGGA-----------GGAGGAG
GATTAATTCTTAAGTAGAGCAGGATTTTCCAATTCTTTTTTCTTCGGTGTTCTTTCCCATGGACATAGATCCGCCCGCTG
CCGCTGCCGCTGCCGCCTCAAACAACAGCTTAACTTTTTGGGGACCTAGTAGATGATGATGATGA-TTAGATTAGGATGT
TAGTTCGT----CCCCTTGCGTGCTCTGCTTCTTCAGAGATGCCAAGAAGAACCAAAATCAAACAGAGTATTCATTCGGC
CAAGAGAAAGGAAATCTTCTGGATGAATCTTGTTCAGATATGTTTCCCCTCTTGGCTACATGTC------------GAAA
TGGCATCAGATCAGAGCAACATGTTGACAGTTTCATAACCAGAGCCAATCTTTTG--------CAACAATTAACCATCAC
CGTCTGGTTCCCATCTCCTTAATCAATCTCCACATGCTCACGGCTGTTCACATATGTGTCTGCCTGCCCCTAATCATGCT
TTGTCTTGCCACGCGATACA-TTTTCCATGATTGATTCTTAACAATTGCTTGCCCTGATGCTATTGATGATGTCGACGAG
GCAGTATAATAGGAGACACACAATCTCGATCGTACGTGCGTATCTCGTAGTTGTACATATACAAACGGCTCCGGGTTGTC
TTAGGTGAGCTGTTGTTGTACGCGGCGTATAAAAAACTGAAAAAGTCCAAAGGCCGGGAGCATATATGGTA---------
----GTAATGAATGGGGGCACTGTGGAAGGATCTCCCCGGAGATCTGCTTACCTGGCGCCAGATTCTGCTTCCGCACAAG
GCGATGTGAGGTGTGGCGTGGGAGCGCTGTATGTGGCCACCATGTGTCCGGCTGCCCGGACGGATGGATGGATTAAACTG
GGAATAAACATGCGGATCAGGGGGAAGATATGGTGGATCGGTGC-TGCAGCTGTGTGTTTTGTTATTTAGGTTGGGTCCT
GATTTTATCCGATTCTGTGTCTTGTCTCGTGGAATGTCAAAGTCGGATATGTATGTGTGTGTG--TTATCTTTGATTT
>chr2D_23
----------------------GATGGAAGATCACGCGACGCGATTCTTT-----CGAGCGACCGGTCGGTGGCGCCCGG
CCGGCGTAAATGGCCCGTCCCGCCCGAGCGATCGCGAACGAAATCCGGGGATCCTGCCATGCACGCACGCGGAAGGGGCC
ACGACGTTGATGGTGCGTTACGTACCCAGTGAAAGAAATAAGAAGATCGCGTGTGAGATCAGTTACAGCCGTGCATGAGA
AGGGATCAGTACAGCTGCCATCCAGAGGTGATATGTCACGGTGCGGGCCTCGATTCTCCACCGATGGATTGAACGATCAC
GGGCCCGGCTCCGGAATGAAATCCGGGGATCCTGCCATGCACGCACG----------------TTGATGGTGCGTTACGT
ACGTGGGCTGGGCTCGGAGTGAA----AGGAAGAAAGAAAGAGATCGCGTGTGAG-----ATCGATCACCAACAGCTGTG
ATGCAGGAGGAGA-------GGCTCCTGGTATCCAAGGGGCAAGTGACCCTTCCACGCACGGAAGGAAACCAAACCAAAC
CAAACCAGCCGATGAATGATCTCACGAATCACGGGTGAATCTCCGAAATCAAGACGTGTCCTGCCGCCGCTCACCCAAAA
AAGATCCACAATTTTCAAGCAAATCCCCGAGCCCACCCGGTACGGATCACCTGCTGCCGCCCGGAAAGACCAAATCAAAT
CCTAGCCAGCCGGCC-------------CGATACACACATGCATACAGAAAGAAAAATCTAAAAAAAAAGTGATGCAGCT
TGTGCGTGCCCCATGCACGCAAATCTCCTCTCCTCCCCACTTGCCCACACCCCAACGGATGGAGAGAAAAGAAAAAGGGA
G-----GAGAAGATACGCAAACAACATACGGTGTGCGTGAGCGATAGAGGAGGTGA-------------CGGAGCGAAAG
CGAGGGGCTCGGCAGGAAAATCCCGGCGGGGATCTCCCGGGCTGGGCCGCGGGGCCCGCGGATCCGCGCCCGGATCGGGC
CCGGGACCCACCGGGGG--CTGGGTTTCACTCGATCCGCGAGCCTAGGATCCCTTTCGAGATCTCGCAGGATTTCCCCCG
CATTTATTTTCCGCTTCCCCCC-GCCCCTGTATATATACCGCCGCGCGTCGCGGCCAACCCAACCAACACACACCCAAAC
GCATCAACACGTCAATCCTTC-------AGACGAGTTCTTCGCCGTTCCATACTTCTGCTCCTGCTGCTCCGGC-GAGTT
TGATCTACTGATGGCCGCCGCTGCTCCCACCCAGGCTCCGGCCATGACCCTGCCGGCCGCCATGGCCGCCAAGGTGGCGC
CCTCCCCGAAGCCCGCCC------------CCGCCGGCGACCGCAAGGTGGTGCCGGTGATGACCGACGCCGACGAGGTC
GTCGTCCAGGTCCAGGTCCAGGCCGAGCTGCACGTGCTCGCCGTCGACGACAGCGTCGTCGACCGCGCCGTCATCGCCAA
GATCCTCCGCAGCTCCAAATACAGAGGTGAG----------------------------------------AAATCTTCA
AGAAACTGGACGGCTAGTCGATCGATCCTTGTTTGGTACATGTTCTAACCTGCCTTG-TTCTGTGTTGCAGTGACTACCG
TGGACTCTGCGACGAGGGCGCTGGAGCTGCTGGGCCTGGGGCTCATCACGGACGTGAACATGATCATCACCGACTACTGG
ATGCCCGGCATGACCGGGTACGAGCTGCTGAAGCGCGTCAAGGAGTCGTCGGAGCTCCGGGAGATCCCCGTGGTGATCAT
GTCGTCGGAGAACGTGCCCAACCGCATCACCCGCTGCCTCGAGGAGGGCGCCGAGGACTTCCTCCTCAAGCCCGTCCGCC
CCTCCGACGTCTCCCGCCTCTGCAACCGCATCCGGTGATCAGCCGTCCAAGCCTCAGACA-----------ACGGAGGAG
GATTAATTCTTAAGTAGAGCAGGATTTTTCAATTCTTTTTTCTTCGGTCTTCTTTCCCATGGACATAGATCCGCCGCT--
-------CGCTGCCGCCTCAAACAACAGCTTGACTTTTTGGGGTCCTAGGA---GATGATGATGATTTAGATTAGGATGT
TAGTTCGTTCGTCCCCTTGTGTGCTCTGCTTCTTCAGAGATGCCAAGAAGAACAAACCG-AAACAGAGTATTCCTTCTAC
CAAAAGGAAGGATATCTTCTGAATGAATGTTGTTCAGAGAAGTTTCCCCTCTTGGCTACATGTCGAAAGCTTTGATGAAA
TGGCATCGGATCAGAGCAACATGTTGACAGTTTCATAATCAGAGTTAGTCTTTTGGCATGAATCAGCAATTAACTATCAT
CATCTGGTTCCTATCTCCTTGATCAATCTCCACATGCTCACGGCTGTTCATACATGTGT----CTGCCCCTAATCATGCT
TTGTCT-GCCACGCGATACAATTTTCCATGATTGATTGTTAATAATTACTTGCTCTGATGC------TGATGTCGACGAG
CTAATATACTAGCAGAAGCACAATCTTGATCGTACGTGCGTATCTCGTAATTGTACATATACAAATGGCTGTGGGTTGTC
TTAGGTGAGCTGTTGTTATACGCGGCGTATAAAAAACTGAAAAGGTCCAAAGGCCGG-AGCATATATG------------
----GTAATGAATGGGGGCACTGTGGAAGGATCTCCCCGGAGATCTGCTTACCTGGTGCCAGATTCTGCTTCCGCACAAG
GCGAGGCGAGGTGAGGTGTGGGAGCGCTGTATGTGGCCACCATGTGGCTGCC------------TGGATGAATTAAACTG
GGAATAAACATGCGGATCAGGGAGAAGATATGGCGGATTGGTGCGTGCAGCTGTGTGTTTGTTA--TTAGGTCGGGTTCT
GATTTTATCTGATTCCGTGTCCTGTCTCGTGGAATGTCAAAGTCGGATATGTATGTGCGTGTATATGTTATCTTTG--
>SNPs
-SSSS-SSSSSSS--S---S-------S----------------------S------------------------S----
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--------------------------S--------------------SSSSSSSS-----------S-------------
----------------------------S---------S----------------------------SS-----------
-------------SS--SSS-------S-----------------------------------------------S--S-
-------------------------------------------S----------------S-------------------
---------------S----------------------------------------------------------------
---SSSSS--SS---SSSSSSSSSSSSS---S----------------------------------------------S-
-----------------S---------------S----------------------------------------------
S-------------------------------------------------S--------------------S--------
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----S---SS-----------------S----------------------------------------------------
----------------------S---------------------------------------------------------
SS-S-SSSS--SS-SSSSSSSSSSSSSS---S---S----------------S-------S--S--S-SS--SSS-----
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--------------S-S-SSSSSSSSSSSS--------------------------------------------------
-----------------------S--------------------------------------------S-----------
------------------------------------------S-------------------------------------
--------------------------------S---------------S-------------S---------------S-
-------------S------------------------------------------------------------------
-----------------------------------S--------------------------------------------
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---------------------------------------S-S-----SSSS---S-SS-S-SSSSSSSSSS---------
-----------------SS----------SS-------------------------------------------------
-------S----------------------------------------------------------S-------------
------------------------------------S------------S--S----SSS---------------S----
------------------------------------------------S---------S---------------------
--------------------------------S-----------------------------------------------
------SS--S-S--------S-S-----S------S--S-S--SSSSSS-S--S-SS-------------S--------
------------------------SS----------------SS-SSS-SSSSSS-------------------------
--------------------------------------------------S-------------SSSS------------
------------------------------------S--------------------------------SSSSSSSSSSS
SSSS----------------------------------------------------------------------------
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----------S------------------------------------------------S--------------------
-------S---------------------------------------S------------S-----------------
>forward_1213
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-------------------------------------------------------------------------CAACACC
CAAACGCACCAAT-------------------------------------------------------------------
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>reverse_2530
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-------------------------------------------------CGCTGATGATGATGTCGACG-----------
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