>input_sequence_72906
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---------------------------------------------------ATGGGCAAGACGAGCACCGTGTCGTCGTG
TCTGTGCTGCCCGTGCCGGTGCCTCTTCTGCGGCCTGCTGAGCTGCATCTTCAGCGTCCTCGCCACCATCCTCGTCATCA
CCGGCGTCGTCGTGCTCGCGCTCTATCTCCTCTTCCGACCGCACCTCATCCAAGCCACCGTCGCGTCCGCCGACCTCGAC
GACTTCACCCTCACCCCGAGTACCTGGATCCTCCGCTACAACCTCTCTGTCGCGCTCTCCGTCCGCAACCCGAACTCCCG
GATCGCCATCCACTACCAGTCCGTCGTCGCCGAGGCCTACTACCAGGGCCAGAGCTTCGCCCACGCCGACCACCCGGACT
TCTACCAGGACACCGGCGAGACCACCGTCGTGCCTCTGGCCTTCGCGGGCGATCACCCGCTCGAGGGCGGGGTCGCCGCC
GCGGGGTTCCGCAAAGAGGCCATCGACCACGCCTCCTTCTCAGTCGACATCAAGCTCAGCGCCAAGATGAAGCTCAATGT
GTGGGCCTTCAGGGTGCCGGGGCCAAAGCCCAAGGTTGACTGCCCTCTCATCCTCCACCGACGGAACGCCTCCGCCTCCG
CGCCCGCCAGCGACGGCCAGCCGGAGTTCCACCCCATCGAATGCCGCGTCTGGTTCTGA---------------------
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>chr7B_1_TraesCS7B01G228000
CTTCAACGAGTACTGGAGACTTTTGTCTGGCGTCGACTTTTCTGGAACTGGCTGATTCGTTTGCTACAATCCACTACCGA
AGTTTTTTTTTGCTGGAACCACGATTAATTTTTGCTGGAACGGACAAATCTTTTTGCTTCAACCAGTACAGGAGATTTTT
GTTTGGTTTCGATTTTTGCTGGAACCACCATTAAGTTTGCTGGAACCGGCAAATGTTTTTGCTTCAACCAAGTAATATTT
TTTTTGTTGTTTTAGATTTTTTTTCATGGCAGTGCAAGTTGGGCATCGGGGATGTTACAACCATGTCGACCGTGCTGTGG
AACCCGCCTATGTTCGAGCTGCAACCATGCCGAGCGGAGGCAGCCGAGGCGAGTGGCACGAGCGGCCGGCGAGCACGGTG
GCACGAATGACCGGCAAGCAGGAGAAGCCGAGGACAAGTGCGGGCGGCTGGTGAGCGCGTGTGGAGTCCGGCCGGCAAGC
ACGCCTAACTAGTTTGGTAGAACCTTTTTCCTGCATGTTTGACTTTTGGGGACGAAGAAAAAACTATATTGTACGGTTAA
AAATGACTGTATCGTACGATCGACAACCGACCGGTCCAAATTTGAGCCGGCGCACCGGCACCGCGTTGTCCTATGAAAAT
ATGGTACGTTTTTGCGTACTCTCTCTTTAAAAAAAGAGCGAC--AGAACACGCGTCCACTCAAGAAAAGAAAAAACAAGA
CAC--AGCGCGCGCATGCACGAGCACGAACAGAAGACCCGGCCAACGCAAGCTCTGAAACCTCTCTTGTCTCCTGGTCTT
GCATGCACGATCACACGTACACTCCTGTCCTACAAAAGTGGCGATCGGCGAGTGTGCCTCCGACCACTAGCTACTACCT-
CATGTCTGTCTCGATCT---CTACACCAATCGCCATGAAACATCCTCTCA---GTTTCTTCACCAGCTAGCTCGTATCAC
AAGACCTCGATCGATCGAGTTGGCCGGCCGCCGGAAGGAACCAACCCATCGATGGGCAAGACGAGCACCGTGTCGTCGTG
TCTGTGCTGCCCGTGCCGGTGCCTCTTCTGCGGCCTGCTGAGCTGCATCTTCAGCGTCCTCGCCACCATCCTCGTCATCA
CCGGCGTCGTCGTGCTCGCGCTCTATCTCCTCTTCCGACCGCACCTCATCCAAGCCACCGTCGCGTCCGCCGACCTCGAC
GACTTCACCCTCACCCCGAGTACCTGGATCCTCCGCTACAACCTCTCTGTCGCGCTCTCCGTCCGCAACCCGAACTCCCG
GATCGCCATCCACTACCAGTCCGTCGTCGCCGAGGCCTACTACCAGGGCCAGAGCTTCGCCCACGCCGACCACCCGGACT
TCTACCAGGACACCGGCGAGACCACCGTCGTGCCTCTGGCCTTCGCGGGCGATCACCCGCTCGAGGGCGGGGTCGCCGCC
GCGGGGTTCCGCAAAGAGGCCATCGACCACGCCTCCTTCTCAGTCGACATCAAGCTCAGCGCCAAGATGAAGCTCAATGT
GTGGGCCTTCAGGGTGCCGGGGCCAAAGCCCAAGGTTGACTGCCCTCTCATCCTCCACCGACGGAACGCCTCCGCCTCCG
CGCCCGCCAGCGACGGCCAGCCGGAGTTCCACCCCATCGAATGCCGCGTCTGGTTCTGATTGATTCAGGCGATTCAGATC
GCCAGTTGATTAAATGTTGT---TAGTTAATTAAATCTGTAGTAGTTAGAGATCTGC--ATAGTCTACCACTCTCCCATG
CATCTTGATTAATTAATGGCGACTGATAGGCGCCGGCGCACCGGCCGAAACTTTCGGCCGGTCCAATACGGGCCCTTGAT
TTGTTTAATGTATAACCGTCAGATCTTTCTTCTCCCTCTCCCTAGTAGTCGTCTTCCTCCCTGCCTAACCCCCGCACAGC
GCTACCTCCTCCCCCACGGGCTTAGCGAAGACGACGCACGAGCTCGCTGTGACGCGCCGGCGGTCACCATCCCATCTCCC
GTTGCAGCTTTTTC--TGATGGAGCTCGCCTCCGTCCACTCGCCGGTTCCAGCTCCGATCCAACCCCTGCTGGATGCCGA
TTTGCAAGAATTCTACGCATCAGCTGACGGAGACAAAAAAATAAGTTGGATTGCAACTTCGCTCCCGTTGGTCGCCGCTG
TAGTTGACTTGCACCACCGTGCTCTAGCAAAACAGAATCTCACAGCAAAAACTCAAATACATGGTTGAAGCAAAAAACGG
AGCCGGTTCCAGCAAAAATTAACACCGGTTCCAGCAAACAAATTTCAGCAGACAAAAAGTCCAGTAATATGTTGAATCAA
AAAATCAGCCGATTCCAACAAAAAATGAAGCC----------------------AGTTCCAGCAAACAAAAAATTCAGCA
ACAAAAAGTCTAGTAATCTGTTGAAGCAAAAGATTAGCGGATTCCAGCAAAAAATTACACCGGTTCCAGCAAAAAATACC
TCGCTACAAAAACACTAGTAGAGGGTTGTAGCAAAAAA--AAGGTGGTTGAAGCATCCCTGGCCGCCGGTTGTAGCATCT
GCCGCCGCTGATTGTAGCGTCTGCCGTCGCCGTATCCAGCAAAATCCTCGATGTGCCATGATCCAGTCACATCATCTCTT
GGCGTTGGATGTAGCACCCGTAGTGGCCGATTCCAACATCTTCACTACTC
>chr7D_644
GTACGTC-------------------------------------------------------------------------
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---------TTTGGCGTACTCTCTCAAAAAAAAAAAGT-GAA--AGAGCACACGTCCACTCGAGAAAAGAAAAAACAAG-
-AC--AGCGCGCGCATGCACGAGCACGAACAGAAGACCCGGCCAACGCAAGCTCTGAAACCTCTCTTGTCTCCTGGTCTT
GCATGCACGATCACACGTACACTCCTCTCCGACAAAAGTGGCGATCGGCGGGTGTGCCTCCGACCACTAGCTACTACCTG
CATGTCTGTCTCGATCTGCGCTACACCAATCGCCATGAAACATCCTCTCATTGGTTTCTTCACCAGCTAGCTAGAATCAC
AAGACCT-GATCGATCGAGTTGGCCGGCCACCGGAAGGAACCAACCGATCGATGGGCAAGACGAGCACCGTGTCGTCGTG
GCTGTGCTGCCCGTGCCGGTGTCTCTTCTGCGGGCTGCTTAGCTGCATCTTCAGCGTCGTCGCCACCATCCTCGTCATCG
CCGGCGTCGTCGTGCTCGCGCTCTATCTCCTCTTCCGACCGCACCTCATCCAAGCCACCATCGCGTCCGCCGACCTCGCC
GACTTTACCCTCACCCCGAGCACCTGGATCCTCCGCTACAACCTCTCTGTCGCGCTCTCCGTGCGCAACCCTAACTCCCG
GATCGCCATCCACTACCAGTCCGTCGTCGCCGAGGCCTACTACCAGGGCCAGAGCTTCGCCCGCGCCGACCACCCGGACT
TCTACCAGGACACCGGCGAGACCACCGTCGTGCCGCTGGCCTTCGCGGGCGATCACCCGCTCGAGGGCGGGGTCGCCGCC
GCGGGGTTCCGCAAGGAGGCCATCGACCACGCCTCCTTCTCAGTCGACATCAAGCTCAGCGCCAAGATGAAGCTCAAGGT
GTGGGCCTTCAGGGTGCCGGGGCCAAAGCCCAAGGTTGACTGCCCTCTCATGCTCCACCGACGGAACGCCTCCGCCTCCG
CACCCGCCGGCGACGGCCAGCCGGAGTTCCACCCCATCGAATGCCGCGTCTGGTTCTGATTGATTCAGGCGATTCAGATC
GCCAATTGATTAAATGTTGT---TAGTTAATTAAATCTCTAGTAGTTA--GATCTGC--ATAGTCTACCACTCTCCCATG
CATCTTGATTAATTAAT---------------------------------------------------------------
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>chr7A_644
GTACGTC-------------------------------------------------------------------------
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---------TTTGGCATACTCTCTCGGAAAAAAAAAGA-GACAGAGAGCACGCGTCCACTCAAGGAAAGAAAAAACAAG-
-ACGCAGCGCGCGCATGCACGAGCACGAACAGAAGACCCGGCCAACGCAAGCTCTGAAACCTCTCTTGTCTCCTGGTCTT
GCATGCACGATCACAGGTACACTCCTCTCCTACAAAAGTGGCGATCTGCGAGTGTGCCTCCGACCACTAGCTACCACCTG
CCTGTCTGTCTCGATCTGCCCTACACCAATCGCCATGAAACATCCTCTCATTGGTTTCTTCACCAGCTAGCTAGAATCAC
AAGACCTCGATCGACCGAGTTGGCCGGCCGCCTGAAGGAACCAACCGATCGATGGGCAAGACGAGCACCGTGTCGTCGTG
GCTGTGCTGCCCGTGCCGGTGCCTCTTCTGCGGCCTGCTGAGCTGCATCTTCAGCGTCCTCGCCACCATCCTCGTCATCG
CTGGCGTCGTCGTGCTCGCCCTCTATCTCCTCTTCCGACCGCACCTCATCCAAGCTACCGTCGCGTCCGCCGACCTCAAC
GACTTCACCCTCACGCCGAGCACCTGGATCCTCCGCTACAACCTCTCTGTCGCGCTCTCCGTCCGCAACCCTAACTCCCG
GATCGCCATCCACTACCAGTCCGTCGTCGCCGAGGCCTACTACCAGGGCA---------CCCGCGCCGACCTCCCGGACT
TCTACCAGGACACCGGCGAGACCACCGTCCTGCCGCTGGCCTTCGCTGGCGATCACCCGCTCGAGGGCGGGGTCGCCGCC
GCGGGGTTCCGCAAGGAGGCCATCGACCACGCCTCCTTCTCAGTCGACATCAAGCTCAGCGCCAAGATGAAGCTCAAGGT
GTGGGCCTTCAGGGTGCCGGGGCCAAAGCCCAGGGTTGACTGCCCTCTCAACATCCACCGACGGAACGCCTCCGC-----
-ACCCGCCGCCGACGGCCCGCAGGAGTTCCACCCCGTCGAATGCCGCGTCTGGTTCTGATTGATTCAGGCGATTCAGATT
GCCAGTTGATTACATGTTGTTAGTAGTTAATTAAATCTGTAGTAGTTA--GATCTGAATATAGTCTACCATTCTCCCATG
CATCTTGGTTAATTAAT---------------------------------------------------------------
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>chr6B_1759
AAA-----------------------------------------------------------------------------
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-----------------GGCGACTGATAGGCGCCGGCACACCGGCCGAAACTTTCGGCCGGTCCAATACGGGCTCTTGAT
TTGTTTAATGTATAACCGTCAGATCTTTCTTCTCCCTCTCCCTAGTAGTCGTCTTCCTTCCTGCCTCACCCCCGCACAGC
GCTACCTCCTCCCCCACGGGCTTAGCGAAGACGACGCCCGAGCTCGCTGTGACGCATCGGCGGTCACCATCCCATCTCCC
GTTGCAGCTTTTTC--TGATGGAGCTCGCCTCCGTCCACTCGCTGGTTCCAGCTCCGATCCAACCCCTGCTGGATGCCGA
TTTGCAAGAATTCTACGCATCAGCTGACGGAGACAAAAAAATAAGTTGGATTGCAACTTCGCTCCCGTTGATCGCCGCCG
TAGTTGACTTGCACCACCGTGCTCTAGCAAAACAGAATCTCACAGCAAAAACTCAAATACATGGTTGAAGCAAAAAACGG
AGCCCGTTCCAGCAAAAATTAACACCGGTTCCAGCAAACAAATTTCAGCAGACAAAAGGTCCAGTAATATGTTGAATCAA
AAAATCAGCCGATTCCAACAAAAAATGAAGCCAGTTCCAGCAAAAATTAACATCAGTTCCAGCAAACAAAAAATTCAGCA
ACAAAAAGTCTAGTAATCTGTTGAAGCAAAAGATTAGCCGATTCCAGCAAAAAATTACACCGGTTCCAGCAAAAAATACC
TCGCTACAAAAACAATAGTAGAGGGTTGTAGCAAAAAA--AAGGTGGTTGAAGCATCCCTGGCCGCCGGTTGTAGCATGT
GCCGCCGCTGGTTGTAGCGTCTGCCGTCGCCATATCCAGCAAAATCCTTGATCTGCCACGATCCAGTCACATCATCTCTT
GGTGTTGGGTGTAGCACCAGTAGTGGCCGATTCCAACATCTTCACTGCTC
>chr1D_1761
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----------------TGGCGACTGATAGGCGCCGGCGCACCAGCCGAAACTTTCGGCCGGTCCAACGCGAGCCCTTGAT
TTATTTAATGTATAACCGTCAGATCTTTCTTCTCCCCCTCCCTAGTAGTCATCTTCGTCCCTGTCTCACCCCCGCACAAC
GCTACCTCCTCCCCCACGGTCTTAGCGAAGACGACGCCCGAGCTCGCTGTGACGCGCCGGCGGTCACCATCCCATCCCCC
GTTGCAACTTTTTC--TGATGCAGCTCGCCTCCGCCCACTCGCCGGTTCCAGCTCCGATCT-ACCCCTGCTGGATGCCGA
TTTGTAACAATTCTACACATCAGCTGACAGAGACAAAAAAATAAGTTGGATTGCAACTTCTCTCCCGTTGGTCACCGCCG
TAGTTGACTTGCACCACCGTGCTCTAGCAAAACAAAATCTCACAGCAAAAACTCAAATACATGGTTGAAGCAAAAAACGA
AATGGGTTCCAGCAAAAATCGACACCGGTTCCAGCAAACAAATTTCAGCA-ACAAAAAGTCCAGTAATATGTTGAATCAA
AAAATTAGCCAATTCCAACAAAAAATGAAGCCCGTTCCAGCAAAAATTAACATCAGTTCCAGCAAACAAAAATTTTAGCA
ACAAAAAGTCCATTAATCTGTTGAAGCAAAAGATTAGCCGATTCCAGCAAAAAATTACGCCGGTTCCAGCAAAAAATACC
TCGCTACAAAAACACTAGTAGAGGGTTGTAGCAAAAAAGAA-GGCGGTTGAAGCGTCCTTGGCCACCGGTTGTAGCATCT
GCCGCGGCTGGTTGTAGCGTCTGCCGTCGCCAGATCCAGCAAAATCCTCGATGTGCCACAACCCAGTCGCAGCATCTCTT
GGCGTTGGATGTAGCACCCGTAGTGGCCGATTTCAACATCTTCACTGCTC
>chr7A_1762
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-----------------GGCGACTGATAGGCGCCGGCGCACCGGCTGAAACTTTCGGCGGGTCCAACGCAGGCCCTTGAT
TAGCTTAATGTATAACCGTCAGATCTTTCTTCTCCCCCTCCCTAGTAGTCGTCTTCCTCCCTGCCTCACCCCTGCATAAC
GCTACCTCCTCCCCCGCGGTCTTAGCGAAGACGACGCCCGAGCTCGCTGTGACGCGCCGTCGGTCACCATCCCATCTCCC
GTTGCATCTTTTTTTTTGATGCAGCTCACCTCCGCCCACTCGTCGGTTCCATCTCCGATCCACCCCCTGCTAGATGCCGA
TTTGCAACAATTCTACACATCAGTTGACAGAGACAAAAAAATAAGTGGGATTGCAACTTCGCTCACATTGGTCGCCGCCG
TAGTTGACTTGCACCACCGTGCTCTAGCAAAGC-AAATCTCGCATCAAAAACTCAAATACATGGTTGAAGCAAAAAA-GA
AGGCGGTTCCAGCAAAAATTAACGCCGGTTCCAGCAAACAAATTTCAGCA-ACAAAAAGTCCGGTAATATGTTGAATCAA
AAAATTAGCCGGTTGCAACAAAAAA-GAAGCTGGTTCTAGCAAAAATTAACATCAGTTCCAGCAAACAAAAATTTCAGCC
ACAAAAAGTCCAGTAATCTGTTGAAGCAAAAGATTAGCCGATTCCAGCAAAAAATTACGCCGGTTCCAGCAAAAAATACC
TCGCTACAAAAAGACTAGTAGAGGGTTGTAGCAAAAAA--A-GGTGGTTGAAGCATCCCTGACCGCCAGTTGTAGCATCT
ACCGCGGCTGGTTGTAGCGTCTGCCATCGCTGGATCCAGCAAAATCCTCGATGTGCTACAACCCAGTCGCAACATCTCTT
GGCGTTGGATATAGCACCCGTAATGGCCGATTCCAACATCTTCACTGCTC
>chr4A_1762
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-----------------GGCGACTGATAGGCGCCGGCGCACCGGCCGAAACTTTCGGCCGGTCCAACGCGGGCCCTTGAT
TTGTTTAATGTATAACCGTCAGATCTTTCTTCTCCCCCTCCCTAGTAGTCGTGTTCCTCACTGCCTCACCCCCGCACAAC
GCTACCTCCTCCCACACGGTCTTAGCGAAGACGACGCCCGAGCTCGCTGTGACGCGCCCGAG------------------
-----------------------------CTCCGCCCACTCGCCGGTTCCAGCTTCGATCCACCCCGTACTGGATGCCGA
TTTGCAACAGTTCTACACATCAGCTGACATAGACAAAAAAATAAGTTGGATTGCAACTTCGCTCCCGTTGGTCGCTGCCG
TAGTTGACCTGCACCACCGTGCTTTAGCAAAACAAAATCTCGCTGCAAAAACTCAAATACATGGTTGAAGCAAAAAACGA
AGCCGGTTCCAGCAAAAATTAACACCGGTTCCAGCAAACAAATTTCAGCA-ACAAAAAGTCCAGTAATATGTTGAATCAA
AAAATTAGCCGATTCCAACAAAAAATGAAGCCAGTTCCAGCAGAAATTAACATCAGTTCCAGCAAAT-AAAATTTCAGCA
ACAAAATGTCCAGTAATCTGTTCAAGCAAAAGATTAGCCGATTCCAGCAAAAAAATACACCAGTTCCAGCAAAAAATACC
TCGCTACAAAAGCACTAGTAGAGGCTTGTAGCC-AAAA--AAGATGGTTGAAGCATCCCTGGCCGCCGGTTGTAGCATCT
GTCGCAGCTGGTTGTAGCGTCTGCCATCGCATGATCCAGCAAAATCCTCGATGTGCCACGACCCAGTCGCAGCATCTCTT
GGCGTTGAATGTAGCACCCGTAGTGGCCGATTCCAACATCTTCACTGCTC
>SNPs
S-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---S------------SSS-------SSSS--------S-------------------------------S
S-------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------------------S-S-----
----------------------------------------------S---------------------------------
S------------------------------------------------------------------------------S
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--------------------S--------------------------------------------------S--------
--------------------------------------------------------------S-----------------
----------------------------------S---------------------------------------------
--------------S--------------------------------------------------------------S--
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-S------S-----------------------------------------------------------------------
------------------------------------------------SS------------------------------
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------------------------------------------------------------------S-------------
-------------------------------------S------------------------------------------
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------------------------------------------------------------------------------S-
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--------------------------------------S-----------------------------------------
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----------S-----------------------------------------------S---------------------
----------------------------------------------S---
>forward_218
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--------------------------------------GCTGGAACCGGCAAATGTTT----------------------
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>reverse_1272
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-----------------------------------------------------------------------GAACTCCCG
GATCGCCATC----------------------------------------------------------------------
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>forward_334
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--------------------------------------------------------------------------CTGTGG
AACCCGCCTATGTT------------------------------------------------------------------
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>reverse_2159
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------------------------------------------------------------------------------TG
TAGTTGACTTGCACCACCG-------------------------------------------------------------
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