>input_sequence_72885
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----------------------------------------ATGGCGACCACCACGCGCAAGGAGGAGGGGCCGGACAAGC
GCGTGAAGCAGCAGCAGCAGGGGGGCACCAAGCTCTACTCTAGGATGCTCTCCAAGGACGTGGCCATCGCCGTGCCGTCC
TTCCGGGTGTACTACGGCGTCGCCTCGGCCGGCTCAGTGCCCTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAGCTC
GCCCTCCGTCCGCGGTCGTGGTGGCCTTTGGGCGGCGCCCGAAGTAGAGGAGCAGCGGGATGGCGAGCGGCGTGCCGCAG
GACTAAACCACCATGGCCATCCACAAGCTGCCGCCGCCCTGGTGTGGGGGAAGCGCTCGCGCCGCCGCTCTCCGGCATCG
TCATCCGCGGCAGGGG-GAAGGCGAGGTGCGTCCGGTCCAGCCCGGCCTCGCCGCTGGACTACAGCGCCGGCTCCGCCTC
CCTCCACTCCGGCGCGTCCACCAGCGGCGG-CGAGAACGGCGCCTTCTGCTTGCCGTGGCACGGCCGCACGGGCACCGCG
CTGGC------------GACGACGACGAAGGTGCCTGCTGCCGCCCCCCGCTTTGCTTTGGGTGGATCCGCTCTCCCATG
CTCCCATGGCGGACGGGATCGCACTGGAGTGGAGTAGAGGGAGAGAGGGGAGG--GAGGATTAG----------------
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>chr5D_1_TraesCS5D01G353800
GCGGGAGGCGGGGGTGGACAGGGGGATCGTGGAGGCCTGCGCCATGGAGAGCCTGGCGGGGCTGGAGGTGAACCGGTCTG
GGAAGACCGACATGGCCGAGTCGTCGGTGCCCAACAACGTTTTCTTCAGGCGCGACGTCGTTGGGGATTGCAAGAACCAC
CTGACGCCGGAGATGGCGAGGAGGCTCGATGAAATCACCGAGAGCAAGTTCAGGGGCTCTGGCTTGGTGTTGCCACGGGC
AACCACACATCTGGGGCGTGTTTGGTTAGTTTCTCCATCAGGCCTGGCTAGGAGAGCAAAAACGAGCCAGGCTGAGCAGG
GTCTGGGTAAAGAAAAACAAGGCCAAAAACGTAGATGATCAGTTGATTGGTTGCCTGCATTAGTTGTCTTGTCATCGGGA
TGCAATTTTCACGCGGCGTTTGGTTACATACATGCATATGATTAGGAGTTAACAACAAAGCTTAACACCCTCCAGGTTTG
GCATCTCATTTCGTCGAACACGTTGAGCGCGCCCGAGGTTCCTCTGCCCATCATGTCCACCGCCAGCTCCTGTCAGCATC
AGCGCGAACCCCAGTGGGAACTTCCCCGGCGGGACGGTGCTGTTGATCCCATCCGAGCCGTGGCTCACGCCGAGAGTTCC
ATGGCCGGCCGGCGCCACCTCCACACGCGCCGGCGCGCTCGTCCTCGTCCGAGGAACCGCCAGGGAGCAGCGCCCCGGGC
GTGACGCCGTTCGCGAGTCCCAGTACGGCGCCCGCGGCTGCTCGATGGCGAGGCCACCAGCGAGCTGGGCAGCGGGAGGC
CGAGGGCCACGAGGAGGCGACGCGTGCCTGTCCTCGGCGAAGGCGGCGGTGTCGGCAGGGGTCGGCGAGGGAAGAGGCCC
GACAGCCGTATTCACATCCACGACCGCGTAGCTGAGGGCGGCCGACGCGCTGCGGAGAAAGTGAGCAGCACGGCGGAGTT
GAGGCTAGCTAGGGAGAGATCAGCGTCGTTCCTTCCGGCCATGGCGACCACCACGCGCAAGGAGGAGGGGCCGGACAAGC
GCGTGAAGCAGCAGCAGCAGGGGGGCACCAAGCTCTACTCTAGGATGCTCTCCAAGGACGTGGCCATCGCCGTGCCGTCC
TTCCGGGTGTACTACGGCGTCGCCTCGGCCGGCTCAGTGCCCTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAGCTC
GCCCTCCGTCCGCGGTCGTGGTGGCCTTTGGGCGGCGCCCGAAGTAGAGGAGCAGCGGGATGGCGAGCGGCGTGCCGCAG
GACTAAACCACCATGGCCATCCACAAGCTGCCGCCGCCCTGGTGTGGGGGAAGCGCTCGCGCCGCCGCTCTCCGGCATCG
TCATCCGCGGCAGGGG-GAAGGCGAGGTGCGTCCGGTCCAGCCCGGCCTCGCCGCTGGACTACAGCGCCGGCTCCGCCTC
CCTCCACTCCGGCGCGTCCACCAGCGGCGG-CGAGAACGGCGCCTTCTGCTTGCCGTGGCACGGCCGCACGGGCACCGCG
CTGGC------------GACGACGACGAAGGTGCCTGCTGCCGCCCCCCGCTTTGCTTTGGGTGGATCCGCTCTCCCATG
CTCCCATGGCGGACGGGATCGCACTGGAGTGGAGTAGAGGGAGAGAGGGGAGG--GAGGATTAGGGAGA--GAGAGGGGG
ATTAACTCGAGACACACGTCTTGAGAGAGCCACCCACGTGCGCCTCGATGCATCGCTCGGGCCTGGCTCTCGGGAAACTG
CCGATTCGGCCGTTTTCAACGGGCCAGGCCTAGGGGTGCTTTAAGAACCGTGCTATGCAGGCTGAACAGTGTTTGCAGGC
AACCAAACAACCGAGGCCCAAAAAGATGCTGCACCGAGCGGGCCTGGTTGGGCTCGATGCGGGCAACCAAACACGCCCCT
AAAGATCTGAACTAGTGGATTCATCAACATCTACCAAAAATATTCCTCTTCATAGTCCACATCTCCACACCTCTCCATTT
TCCACTCTGCTTGATTTCTTGATATCAACAACATATTTTCAATAGCTGCATTCTTAACGGCCAAAGTAAAGATTAACAAC
ATA-TTTAAACTTA-GGGTGTAGACTCACCACCTGTGTTCGATCCGCTGCCGCTTCAATTAGAGCATCCCCAGCCGGCCT
TCTCAAATCCTTACACAAACACACCCAGCCGATGACCGGACAGGAGAGAGAGAAAAAATGTCTCAGTTAGATCTC---TC
GTATTATCCTTATACGTCTGAGCTGTCCGTGAACCTTCATATTGAGACTAAATGTACGGAGGATACGAGGGCTCGCGGAC
GCAACCGAACGCGTTCGGTCAGTACGCCACGTAGGACGCGGCCCACCCAGGACCACATTTTCTCTTTCTTTATTCTTTTT
TCTTCCTTCTCTTCATCTCCACCAATCACATGTATGAGCATCTACAACCGGATATGTCAAATATGGCCCCTCAAACGCCC
GCGGATGTGTCCGCGGGAAGTGACCGGGCAGGCCTCAAATTTCACTTGTTGCATCCGGGCATCTCATACTAGATTCTTAA
ATCCATACAAAGACATGCAAACGAAATAACCTACGTACTACGTCGATCACCTAGCTACTCATCGTCGGAGATGTCGACGA
TCTCCGTGCGCGGCTCCGGCAGGATTGACGC
>chr5A_1
GCGGGAGGCGGGGGTGGACAGGGGGATCGTGGATGCCTGCGCCATGGAGAGCCTGGCTGGGCTGGAGGTGAACCGGTCTG
GGAAGGCCGACATGGCCGAGTTGTCGGTGCCCAACAGCGTTTTCTTCAGGCGCGGCGTCGTCGGGGACTGGAAGAACCAC
CTGACGCCGGAGATGGCGAGGAGGCTCGATGAAATCACCGAGAGCAAGTTCAGGGGCTCTGGCTTGGTGTTGCCACGGGC
AACCACACATCTG-------------------------------------------------------------------
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-AAGATCTGAACTAGTGGATTCATCAGCATCTACCAAAAATATTCCTCTTCATAATCCACATCTCCACACCTCTCCATTT
TCCACTATGCTTGATTTCTTGATATCGACAACATATTTTCAACAGCTGCATTCTTAACGGCCAAAGTAAAGATGAACAAC
ATATTTTAAACTTACGGGTGTAGACTCACCACCTGTGTTCGATCCGCTGCCGCTTCAATTAGAGCATCTACCGCGGGCCT
CCTCAAATCCTTACACAGACACGCCCGACCAATAATCGGACAGAAGACAGAGAAAAAAAAAAGTCCTAATCAAATTCTTC
GTATCATCTTTATACGTCCGAGCTGTCCGTAAACCCTCATATTGAGACTAAATATAGGAAGGAGACAAGGGCTTACGGAC
GTGACCGAACGCATTCAGTCAATACG------------------------------------------------------
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>chr5D_1313
GCCGGCCA------------------------------------------------------------------------
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---------------------------------------TGGCGCGGGGGTAGCGCTCGCGCCGCCGCTCTCCGGCATCG
TCATCCGCGGCAGGGGCGAAGACGAGGTGCATCCGGTCCAG-CCGGCCTCGGCGCTGGACTACAGCGCTTGCTCCGCCTC
CCTCTGCTCCGGTGCGTCCACCAGCAGCGG-CGAGGACGGCGTCTTCTGCTCGCCGTGGCACCGCCGCGCGGCCACCGCG
C---CAGCGACGACGACGACGACGAGGAAGGTGTCTGCCGCCGCCCCCCGCTTTGCTTTGGGTGGATCCGCTCTTACCTG
CTACCATGGCAGACGGGATCG--CTGGAGTGGAGTAGAGGGAGAGAGAGGGGATTGAGGATTAGGGAGA--GAGAGGGGG
ATTAACTTGAGACACACGTCTCCAGAGAGCCACCCACGTGCGCCTCGAAGCATCGCTCGGGCCTGGCTCTCGAGAAACTG
CCGATTCGGCAGTTCCCAACGGGCCAGGCCCAGAGGTGCTTTAAGAACCGTGCTATGCGGGCTGAACAGTGTATGCGGGA
AACCAAACAACTAAGGTCCGAAAAGATGCTGCACCGCGGGGGCCTGGTTGGCCTCGATGCAGGCAACCAAACACGCCCTA
AA------------------------------------------------------------------------------
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>chr3D_1313
GCCGGCCA------------------------------------------------------------------------
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---------------------------------------TGGCGCGGGGGTAGCGCTCGCGCCGCCGCTCTCCGGCATCG
TCATCCGCGGCAGGGGCGAAGACGAGGTGCATCCGGTCCAG-CCAGCCTCGGCGCTGGACTACAGCGCTTGCTCCACCTC
CCTCTGCTCCGGCGCGTCCACCAGCAGCGG-CGAGGACGGCGCCTTCTGCTCGCCGTGGCACCGCGT-GCGGCCACCGCG
C------------CAGT---GACGACAAAGGTGTCTGCCGCCGCCCCCCGCTTTGCTTTGGGTGGATCCGCTCTTCCCTG
CTCCCATGGCGGACGGGATCG--CTGGAGTGGAGTAGAGGGAGAGAGAGGGGATCGAGGATTAGGGAGA--GAGA-GGGG
ATTAACTCGAGACACACGTCTTCAGAGAGCCACCCACGTGCGCCTGGAAGCATCGCTCGGGCCTGGCTCTCGAGAAACTG
CCGATTCGGCAGTTCCCAACGCGCCAGGCCCAGAGGTGCTTTAAGAACCGTGCTATGCGGGCTGAACAGTGCATGCGGGA
AACCAAACAACTGAGGTCCAAAAAGATGCTGCACCGCGCGGGCCTGGTTGGCCTCGATGCAGGCAACCAAACACGCCC--
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>chr2D_1313
GCCAGCCA------------------------------------------------------------------------
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---------------------------------------TGGCGCGGGGGAAGCGCTCACGCCGCCGCTCTCTGGCATCG
TCATCCGCAACAGGGG-GAAGGCGAGGTGCGTCCGGTCCAGCCCAGCCTCGCCGCTGGACTACAGCACCGGCTCCGCCTC
CCTCCGCTCCGGCGCGTCCACCAGCGGCGGGCGAGGACGACACCTTCTGCTCGCCATGGCACCACCGCGCGGCCACCGCG
C---C------------GACGATGACGAAGGTGCCTGCCGCCGCCCCCTGCTTTGCTTTGGGTGGATCTGCTCTCCCCTG
CTCCCATGGCGGATGGGATCGCACTGGAGTGGAGTAGAGGGAGAGAGGGGGGATTGAGGATTAGGGAGA--GAGAGAGGG
ATTAACTCGAGACACACGTCTCCAGAGAGCCACCCATGTGCGCCTCGAAGCATCGCTCAGGCCTGGCTCTTGTGAAACTG
CCGATTCGGCCGT----------CCAGGCCCAGGGGTGCTTTAAGAACCATGCTATGTGGGCTGAATAGTGTATGCAGGC
AACCAAACAACCGAGGTCCAAAAAGATGCTGCACCGCGCGAGCCTGGTTGGGCTCGATGCGGGCAACCAAACACACCCCT
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>chr1D_1329
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------------------------------------------------GGAAGCGCTCGCGCCGCCGCTCTCCGGCATCG
TCATCCGCGGCAGGGG-GGAGGCGAGGTGCGTCCGGTCCAGCCCGGCCTCGCCGCTGGACTACAACACCGGCTCCGCCTC
CCTTCGCTCCGGCGCGTCCACCAGCGGCGG-CGAGGACGGCGCCTTCTACTCGCCGTGGCACCGCCGCGCGGCCACCGCA
C------------CGCCGACGACGACGAAGGTGCCTGCCGCTGCCCCCTGCTTTGCTTTGGGTGGATCCGCTCTCCCCTG
CTCCCATGGCGGACGGGATCGCACTGGA-TGGAGTAGAGGGAGAGAGAGGAGATTGAGGATTAGGGAGAGAGAGAGAGGG
ATTAACTCGAGACACACGTCTCCAGAGAGCCACCCACGTGCACCTCGAAGCATCGCTCGGGCCTG---------------
CCGATTAGGCCGTTCCCAACTGGCCAGGCCCAGGGGTGCTTTAAGAACCATGCTATGCGGGCTGAACAGTGTATGTAGGC
AACCAAACAACCGAGGTCCAAAAAGATGCTGCATCGCGCGGGCCTGGTTGGGCTCGATGCGGGCAACCAAACATGCCC--
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>SNPs
---------------------------------S-----------------------S----------------------
-----S---------------S--------------S-----------------S------S-----S--S---------
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-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S-----------------------------------
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-----S-----------------------------S---------------S----------S-----S---S-------
-SSS----------------------------------S--------------------------------------S--
----------------------------------------------------S---------------------------
----------------------S-------------------------S-----------------------S-------
--------------SS--------------S---------------------------S-------------S-------
----------------S-------------------S-------------------------------------------
--------------------------S---------------------------S-------------------------
------S-------------------S---------------S------------------------------S------
--------------------------------------------------------------------SS-S--S-----
S----------------S----S---SS--S--S-S-------S---S----------SSSSSSSS-S-SSSSSS-----
----S---S---------S-----------S----S-----------------S--S-S----S--S------SS-----
-SS---------S---S----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_972
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------------------------------------------------------------------------GCGGAGTT
GAGGCTAGCTAG--------------------------------------------------------------------
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>reverse_2259
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------------------TGAGCTGTCCGTGAACCTTC------------------------------------------
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