>input_sequence_72860
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------------------------------------------------ATGCAGCCGGCGCCGACCGCCAGGGCCGCCGG
CTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGGTCGTCTGCTCGGCGTTCCTCACCC
TGCTCCTCCTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCGCGCTTCCACGTCACCGCC
TTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGCCGTGGTCTTTTCCGGGCAGCTCTCCATCCGCAACCC
GAACCAGGACGTAGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTGTACCGCCAGTACGGCGCCGTCGTCAAGGACC
ACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCGTTCGAGGGCGTCGCCGTGCCG
GCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCAGGAG---GCGCCGTGGAGTTCACGGTGAAGGTCCG
GTCGAGGATCCGCGCCAAGGTGGCCGTCTGGGGCTTCCACTGGCACCCGCTCCACGTGGACTGCGAAGTGGCCGTGGGCC
CCGACGGGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGTTGCGACATAGACTTCTTGTAG---------------------
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>chr2B_1_TraesCS2B01G500000
GCTGCGGCGCCGTGAACCAGATGCGCATGTAGGCCGCCGGCGGTGGTCCGTGATCATCGGCCCGTAAATTATCCAAAGT-
------CTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACA-TTGTGTGCATCATTGTCTTTCTTCATTTGCCTT
GTTTGTTCGTTTGTACCATGTATTCAAATTCAAATAAAAATGTTTGCTTGATTGATTCAGTGAAATGATGTCCTCTGCCA
ACCTCGATGAACACACTACGACAGAGAGAATTGGAGTTGTATTTTCCGATTATTCTCGGCT-CGTACACGGTACAC---G
TACAGGAAACTTGAGGCTGGGATGTGCTTTCTGGCAGAAGAGTTTACTTGGTGCTCTGGATATTCTATT-----TCCGTA
GGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAAATCAAGCTAGCTCCACATGGATGGGCGTGGACCACGCCAT
CCACTCGTCAACTCTGCAAGCTTGTCTCACACTCCTTGTACACTTCCTTTCTAGCCTTTTGGTCT--TTTTTTTGCGGAG
AAGCCTTTTGGTCATTATTATCCGGTAAATTT-GTTAAGGCC-----AGTTGTGAGTAAAAAGAAGACAATTAATTTA--
ATAATTTTACGAGAC------CAGATGTACGATAATTTCAGACAACTAATAATCAGCAACATTTTCTTTTTTTGCTCGAA
ATCCT----------------TTTGTAT--------ACACCACCTTCTTTTTGCTCGTCCAATGATTATCATCCCA----
----------AGTTCCGAACCGAAAGACGAGGAATCGGAAT--ATATACCGTACACCAAAGCTCGAAGAAACCTAGCTGG
GT---TAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTTTCTTCAAAGAATCACCACGGGCCAGTAT
AACACCCGGAACAACGTCGTAATCAAACCTGTGCATGCACGCCAAC------------GCGCGCGTACGCACGCACGTAG
GGCGACCAGAGGCCGAACAAGGGGGCAGGGGTACGCGCGCGCGCCGCCATGCAGCCGGCGCCGACCGCCAGGGCCGCCGG
CTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGGTCGTCTGCTCGGCGTTCCTCACCC
TGCTCCTCCTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCGCGCTTCCACGTCACCGCC
TTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGCCGTGGTCTTTTCCGGGCAGCTCTCCATCCGCAACCC
GAACCAGGACGTAGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTGTACCGCCAGTACGGCGCCGTCGTCAAGGACC
ACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCGTTCGAGGGCGTCGCCGTGCCG
GCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCAGGAG---GCGCCGTGGAGTTCACGGTGAAGGTCCG
GTCGAGGATCCGCGCCAAGGTGGCCGTCTGGGGCTTCCACTGGCACCCGCTCCACGTGGACTGCGAAGTGGCCGTGGGCC
CCGACGGGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGTTGCGACATAGACTTCTTGTAGGTGTAATCCGCCTGCATGAGT
ACGGACACAACAAGGGTTTAGTAA---------------------CATTCCAATGTAATCTGCCG-------GCAAGTAA
TTAACATCATATACTGTTGAAAAACAACATCTTCTATAGGTTAATTAGAAGATTAAGACAAACCAAATCCTTGATTGTGG
GGCCCATCACCT---GTTGCTTCTCTGTATATTTCCATTGCCTCCTCCATGACTTTGGGGTGTGATAAAAGCCATGCTCT
TCTCCTCATTGATGGATGAGTTCTGAATGGGAAGAAAGAGAGCAAATCTGTCAACGCCGACTCGCCGTCCATCCTTCCTG
CCTTGCCAAAGAACAAAGGGGCAGCGTGGGGGTCGAAACCAGCAGCAGCCAGTAGCATCATTCCAATGTAGTCCGCCTCT
AGCTCATTCCTACAATACGGAGTAGTACATGTCATGTAATTAAC-----ATCA---------------------------
---------------------------------------------------------------------TACATTCATAC
TCTTACAAAACAACATCTTCTAATTAACACCAAGTAAATACTTGCATACACACACACT----------------------
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-----------------TTAAGATGCATGTATGAACAA-GGTGGGGTTAAAAGAAGTGATGAAATTGATATACGTACCTT
CGTAGCAGTGGCGCCACGAGGAGGTCGGTTGGGAACCACAACCTGAATATTTGGATCATCTCAGACGCGTGCCTCGCAAT
AACATGTCCAACCTACATA--TATATAGAAACC-AATGAACAATACTATCGGCTTTGAAAATTAACAACCTCAGTAATCC
AAAACGAACGAACAAACAAGCATATGTATGTACCTCATGCGCGATGACGGTGGCAATCTCAGCATCCGTGCTGAAATGAT
CAAGTAATCCCGTGAAGACTATAATCTTACCACCACCCTCAAAGCAATGTGCTCTCTTGC---TGTGTACGGCAACTATC
ACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACGTCGCCATGTGTGGTGGTTCCCCTCCTCGTTGTTCTATCTTGCT
CTTGATGGACAAGCCACGACGGATAGCGCGGATGATC
>chr2D_1
GCTGCGGCGCCGTGAACCCGATGGGCATGTAGGCCGCCGGCGGTGGTCCGTGATCATCGGCCCGTAAATTATCGGAAGTC
TGTGGCCTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACA-TTGTGTGCATCATTGTCTTTCTTCATTTGCATC
GTTTGTTCGTTTGTACGATGTATTCAGATTCAAAT-AAAATGTTTGCTTGATTGATTCAGTGAAATAATGCCCTCTGCCA
ACGTCGATGAACACACTACGACAGAGAGAATTGGAGTTGTATTTTCCGATTATTTTCGGCTGCGTACACGGTACAGCGGG
TACAGGAAACTTGAGGCTGGGATTTGCTTTCTGGCAAAAGAGTTTACTTGGTGCTCTGGATATTCTACAGTATCTCCGTA
GGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAAATCAAGCTAGCTCCACATGGATGGACGTGGACCACGCCAT
CCACTCGTCAACTCTTCAAGCTTGTCTCACACTCCTTGTACACTAACTTTCCAGCCTTTTGGTCTTTTTTTTTTGCGGAG
AAGCCTTTTGGTCATTATTATCCGGTAAATTTTGTTAAGGCCAGTTGAGT----AGTAAAAAGCAGACAGTTACTTAAA-
ATAATTTTACGAGACGAGAACCAGATGTACGATAATTTCAGACAGCTAATAACCACCAATATTTT--TTTTTTGCTCGAA
ATCGT----------------CTTGTATACAGTTACACACCACCTTTCTTTGCTCGT----------------CCA----
----------AGTTCCCAACCGAAAGACGAGGAAGCGATCGGAATACACCGTACACCAAAGCTCGAAGAAACCTAGCTGG
TTAGCTAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTTTCTTCAAAGAATCACCACGGGCCAGTAT
AACACCCGAAACAACGACGTAATCAAACCTGTACATGCACGCCAATGCGCGCGCACGCGCA------------CACGTAG
GGCGACCAGAGACCGAACAAGGGGGCAGGGGCACGCGCGCGCGCCGCCATGCAGCCGGCGCCGACCGCCCGGACCGCCGG
CTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGATCCTCTGCTCGGCGTTCCTCACCC
TGCTCCTCGTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCGCGCTTCCACGTCACCGCC
TTCTCCGCCGCCAGCGTCCAGCAGGCCGGCGCCGGCGCGGTCCTCCTC------TCCGGGCAGCTCTCCATCCGCAACCC
GAACCGGGACGTGGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTCTACCGCCAGTACGGCGCCGTCGTCAAGGACC
ACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCGTTCGAGGGCGTCGCCGTGCCG
GCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCCGGAGGTGGCGCGGTGGAGTTCACGGTGAAGGTCCG
GTCGAGGATCCGGGCCAAGGTGGCCGTCTGGGGCTTCCACTGGCACCCGCTCCACGTGGACTGCGACGTGGCCGTGGGCC
CCGACGGGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGCTGCGACATAGACTTCTTGTAGGTGTAATCCGCCTGCCTTTCA
CATAAAAAGACCAAATGAGTACATACCAGCAACAACTAGCGGCAACATTCCAATGTAATCCTACAATACAGAGCAAGTAA
TTAACATCATATAG--------------------TATAGGTTAATTA------TAAGACAAACCAGATCCTTGATTGTGG
GGCCCATCACCT---GTTGCTTCTCTGTATAATCCCATTG-CTCCTCCATGACTTTGGGCTGTGATAAAAGCCATGCTCT
TCTCCTCATTGATGGATGAGTTCTGAATAAGAATAAAGAGAGCAAATCTGCCAACGCCGACTCCCCGTTCATCCTTCCTG
CCTTGTCAAAGAAGGAAGGGGCAGCGTGGGGATCGAAACCAGCAGCAGCCAGTAG--------------------CCTCT
AGCTCATTCCTACGATGCAGAGTATAC--------GTAGTTAACATCATATCA---------------------------
---------------------------------------------------------------------TACATTCATAC
TCTTACAAAACAACATATTCTAATTAACACGAAGTAAATACTTGCGTGCATACAAATACTGGGTTAGCTTAATGTTTTTG
TAAGTTTTTTTTATATGTTTGTTTCTAGTTGGTTTCAGCTACTCTGGATTGTCCATAGTTTTTGAAAACCCTAAGTTTTG
CCCCTCTTTCATTTGGTGCCCAACGGAAATCCCATTCTGCCAATTTTTGTTAGCGCCCATGGACCATCACATTCACGTAG
GTTATAGGTTCCTTTTCTGTTTAGCAGCACCTCACGAGTGAGACCCAGTTGGCACTGTCCCGTAGCCGAGGGACGTAGGT
GTCCAACGGTCAACGGACATGAACGTGACAGTGGGTGCTGACCGGAAAAAAACATGTCAAATGGGGATATTCGTAGGGAC
ACCGAAGGAAGAGGGGCAAACTAAGAGTTTCCAAAAACTAGGCATAATCCTGAGTAGCTGGAAGCAACTAGGGACAAAAG
CACACACAGACACATTGTTAAGATGCATGTATGAACAA-GGTGGGGCTAAAAGAAGTGATGAACTTAATA----TACCTT
CGTAGCAATGGCGCCAAGAGGAAGTGGGTTGGGAACCACAACCTGAATATTTGGATCATCTCAGACGCGTGCCTCGCAAT
AACATGCCCAACCTACATA--TATATAGAAACC-AATAAACAATACTATCGTCTTTGAAAACTAACAACCTCAGTAATCC
AAAACGAACGAACAAACAAGCATATGTATGTACCTCATGTGCGATGACGGCGGCAATCTCAGCATCCGTGCTGAAATGAT
CAAGTAATCTCGTGAAGACTATAATCTTACCACCACCGTCAAAGCAATGTGCTTTCTTGACGTTGTGTTCGGCAACTATC
ACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACGTCGCCATGTGTGGTGGTTCCCGTCCTGGTTGTTCTATCTTGTT
CTTGATGGACAAGCCACGACGGATAGCGCGAATGATC
>chr2A_1
GCTGCGGCGCCGTGAACCCGATTGGCATGTAGGCCGCTGGCGGTGGTCAGTGATCACCGGCCCGTAAATTATCGAAAGT-
------CTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACATTTGTGTGCATCATTGTCTTTCTTCATTTGCATT
GTTTGTT----TGTGCGATGTATTCAAATTCAAAT-AAAATGTTTGCTTGATTGATTCGGTGGAATAAAA-----TGCCA
GCCTCGATGAACACTC----------------------------------------------------------------
TACAGGAAACTTGAGGCTGGGATGTGCTTTCTGGCAGAAGAGTTTACTTGGTGCCATGGATATTCTATT-----TCCGTA
GGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAGATTAAGCCAGCTCCACATGGATGGACGTGGACCACGCCAT
CCACTCGTCAACTCTTCAAGCTTGCCTCACACTCCTTGTACACTTCCTTTCC----------------------------
-AGCCTTTTGGTCATTATTATCCGGTAAATTT-GTTAAGGCCAGTTGAGTTGTGAGTAAAAAGAAGATAATTAATTTATT
ATAATCTCATGAGAC------CAGGTTTATGATAATTTCAGACAACTAATAATCAGCAACATTTT--TTGTTTGAGCTGA
GCAATATTTTTTTGATCATCATTTGTAT--------ACACCACCTTTCTTTGCTCGT----------------CCAGTGA
TATCACCCCAAGTTCCCAACCGAAAGACAGTGAAC----CGGAATATACCGTACACCAAAGCTCGAAGAAACCTAGCTGG
GT---TAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTGTCTTCAAAGAATCACCACGGACCAGTAT
AACACCCGAAACAACGACGTAATCAAACCTGTACATGCACGCCAAT------------GCA------------CACGTAG
GGTGACCAGAGACCGGACAAGGG------GGCACGCGCGCGCGCCGCCATGCAGCCGGCGCCGCCCGCCCGGACCGCCGG
CTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGATCGTCTGCTCGGCCTTCCTCACCC
TGCTCCTCGTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCGCGCTTCCACGTCGTCGCC
TTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGGCGTGGTCTTTTCTGGGCAGCTCTCCATCCGCAACCC
GAACCGGGACGTGGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTCTACCGCCAGTACGGCGCCGTCGTCAGGGACC
ACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCCTTCGAGGGCGTCGCCGTGCCG
GCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCGGGAGGTGGCGCGGTGGAGTTCACGGTGAGGGTCCG
GTCGAGGATCCGGGCCAAGGTGGCGGTCTGGGGGTCCCACTGGCACCCGCTCCACGTGGACTGCGACGTGGCCGTGGGCC
CCGACGAGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGCTGCGCCATAGACTTCCTCTAGGTGCGGTCCGCCTGCATGAGT
ACGCACATAACAAGCGTTTAGTAAT------------------AACATTCCAATGTAATCTGCCG-------GCAAGTAA
TTAACATCATATAATTCCAAATCAAACC------------------------------CAAACCAAATCCTTGATTGTGG
GGCCCATCACCT---GTTGCTTCTGTGTATAATTCCATTGCCTCCTCCATGACTTTGGGCTGTGATAAAAGCCTTGCTCT
TCTCCTCCACGATGGATGAGTTTTGAATGGGAAGAAAGAGAGCAAATCTGTCAACGCCGACTCCCCTTCCATCCTTCCTA
CCTTGCCAAAGAACAAAGGGGCAGCGTGGGGGTCGAAACCAGCAGCAGCCAGTAGCATCATTCCAATGTAGTCCGCCTCT
AGCTCATTCCTACAATACGGAGTGGTACATGTAATGTAATTAACATTATACTCCCTCTGTCCGAAAATAAATGTCTTAAT
TTTAGTAGTACAACTTTGTATTAAAGTTAATACAAAGTTGAGACACTTATTATTTTGAGACGGAGGGAGTACATTCATAC
TCTTACAAAACAACATCGTCTAAGTAACACGAAGTAAATACTTGCATACACAAACACT----------------------
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-----------------TTAAGATGCATGCATGAACAAGGGTGGGGTTAAAAGAAGTGATGAAATTAATA----TACCTT
CGTAGCAATGGCGCCACGAGGAGGTTGGTTGGGAACCACAACCTGAATATTTGGATCATCTCAGACGAGTGCCCCGCAAT
AACATGCCCAACCTATATATGTATATAGAAACC-AATAAACAATACTACCGGCTTTGAAAATTAACAACCTCAGTAATCC
AAAACCAACGAACAAACAAACAGATGTATGTACCTCATGCGCGATGAAGGAGGCAATCTCAGCATCCGTGCTGAAACGAT
CAAGTAATCCCGTGTAGACTACAATCTTACCACTGCCGCCAAAGCAATGTCCTTTCTTGCTGTTCTGTTCGGCAACTATC
ACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACATCGCCATGTGTGGTGGTTCCCGTCCTGGTTGTTCTATCTTGCT
CTTGATGGACAAGCCACGACGGATTGCGCGAGTGATC
>chr2A_1785
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---------------------------------------------------------------CAAATCCTTCATTGTCA
GGCCCATCACCTTCGGTTGCTTCTCTGTACAATTCCATTGCCTCCTCCATTACCTTGGGTTGCGATAAAAGTCGTGATCT
TTTCTTACAAGATGGATGAACTTTGGATGAGAAGAAAAAGAGGAAATTTGTAAATGCTGACTCCCCTTTCCTCTTTCCTG
CCTTGTCAAGCCATATAGCAGCAGCGTGGGGATCAAAACCAGCCGCAGCGGCTATCAACATTCCAATGTAATCCGCCTCT
AGCTCATTCCTACAATAGAGTAG------------GTAATTAACA-----------------------------------
--------------------------------------------------------------------------TCATGC
TCTTAAAAAACAACATCTTCTAATTAACATGACGTGAATGCTTGCATGCATACATATACTAGGCTAGTCTAATGAGTTC-
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--------------TTGTTAAGATGCTTGCATGAATAA-GGTGTGGGTAAAGCAAGTGATGAAATCAATA----TACCTT
CGTAACAACGGCGTCACCAGGAGGCGGGTCAGGAACCACAACTCGAATATTATGGTCATCTCATAGAAATGCCTCGCAAT
AACATGTCCAACCTACGTA--TATATGCAAAAGAAATAAGCAATACTATCGACTTTGAAAACTAACAGCCTCACTGATCC
AA----AATGAACAAACGAACGTATTTGTGTACCTCATGTCCGAGGACCCATGCAATCTCAGAATCCGTGCTGGA---AT
CAAGTAATCCCGTGGAGACTATTATCTTACCAT---CGAAATAGCATTGTGCCCTCCAGGCTTTTTCTTCAACAACTATC
ACCTCCCAATTGAGCTCGTCGATCCAACCCAAAGGCGTCATCATCTGTAGTGGTTCCTGTCTTTGCTGTTCTATCTTGCT
CTTGATGGACAAGCCACGATGGATGGCGC--------
>SNPs
------------------S----S-------------------------------------------------S------
-----------------------------------------------------------------------------S--
----------------S------------------S------------------------------S---S---------
------------------------------------------------------S--------------------S----
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----------------------------------------------------------------S---------------
---------------S-----------------------------------S----------------------------
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-----------------------------------------------------------------SS-------------
---S------------------------------------------SS---SSSSSSSSSSSSSSSSSSSSSS-------
----------------S-----------------S--SSSS---------------------------------------
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--------S-------S---------------S------------S--------------SSSSSSSSSSSSS-------
-----------S-------------------S-------------------------------------S--S-------
-------------------------------------------------------S------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------S------------------------------------
-----S------S-----------------------------------S-------------------------------
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--------------------------------------------S-----------S-----------------------
------------S-----------------------------------------------------S-------------
-------------------------------------S------------------------------------------
---S---S------S-----------------------------------------------------------------
-------------S-SSSS--SS-S-S-SSSSSS-------------SSSSSS---------------------------
-------------------------------S---------------------------S--------------------
---------------------------------------------------------------S----------------
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--------------------------------S-----------------------------------------------
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------------------------------S-------------------------------------------------
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------------------------------------------------------------------S---SSSS------
-------S-----------------S------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------S-----------------------------
-------------------------------------S------------------------------S-----------
----------------------------------------------------------S----S----------------
------------------------------S------
>forward_465
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---------------------------------------------GCTAGCTCCACATGGATGGG---------------
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>reverse_3091
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--------------------------------------------------TGGCAATCTCAGCATCCGTG----------
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