>input_sequence_72859
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-----------------ATGGACGCAAAACTCCTACACTACGACCGGAGCGACGAACAACCTTCGATGGAGCGCCGGGAT
AAGCAGCCA-ACGGGTACGGTGACTGCCATGGATATGCTAATCCTGGTCTTCGTTCTGTGTATAGTTGGCCTACTTTTTT
GGGTTCTTGCTCTGGGTCTCGTCGGCTTGGAGGCATCCCAGCGACCGGAGTTCTCTGTGGTCATGGACGGATTCTCCGAC
CTCGAGGACCACGTCGCGCGGACGTTCAATCTCACCATCGTCATCAACAACTTTAGGGGCAAGTCCGAGATCTGCGTGGG
CGGCGAGGCAGTGGTCTTATACGGAGGAGTACCACTCGCCGGCTGCGGCGTGCAGGATCTGTGCGTGCCGCCCAAGTGCT
CCACGAAGTTTCATATCGTCGCCGCGAGCGGAGGGGTGGGCCTACCGAGGGAGCTGGCCGACCGCATGGCCGAGGAGAAG
CGCGCTGGCGGCGCGGTGCAGGTAGAGGTTCGCGTCGTCTCGCCGAAGCACCGCTCGTTCGTGTCGTGCATGGCGGCGCT
GGCTCGTGGGGCAGCGGCGCCGCCGTCCCCATGCCAGGGCGTGTTTCTCTCCGATGAATCCGACGGCGTTAGGCGTACGG
ATGACCCGCCCAGCTTTCTGTTCTGA------------------------------------------------------
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>chr2B_1_TraesCS2B01G401200
TTCATCGAACAAGTGTCGGACATGGTAGTATAGCAGTAGCGGATGGTACCTGGCAAGACGGTCGGAGGAGAGGGGTTGAA
CGGCAATGGAGAAGAAGTGGGGTGGAGCCCAACTGAAACCCTGGAGGTGACGGAGACATAGAGTTCCGGCAGGGCTGGGG
TGTGGTATGGCATGGCGGCCGGGGTGGTGGAGCGGCGGCGAAGGCAAGAGAGAAAGAAGGAAGGAGAGAAAATGGGGAGG
ATGGAGGCGCGGGGTCCGGGAAGGGTTTTGGGCGGACCGGGGGTGTCGGAGTCCTACGTGTCTGTTGTCCGGACTCCCGC
AAGCTGCCCCATGTCTGTCTCCGGTTTGCGGCAGAAAATGTTTTTGGACCGCCCCGCAGACCGATTCAAGACTGCTTTGG
ATGACTTCCACG-----------GTATGGACAGCGTGGTCTGGACGCATGCGGGTGGTTTGCGAGTTCGCTTTGAAGATG
CCCTTAATAATGGAAGCTACATGCACAAATATAAATGTGGCAAATTTTAGTAG--AGTTAGATGAAGATTGTATGACGAT
TGTGTGTGCCAGTTTGATCAAGTAAATACTGTAGTTAATCATTAGTATATTTGCATATATAATATGTTACGGCAAAGTAA
AATCTAAAGACATATTCTCATGCTCTTATTGCCGTGGAGGTGTGAAGTAACTAGGTTACCTACCCTGCGCCATAGGAGCA
AACACAGACGAGGTTTATGGACAAGCACAACTCGATCGATTGATAACCTTCTCCGAAATTGATATGCACAACTTAATCAT
CTTACGGTCAATTTTGAGAACG-ATTGCCAATCCAACGCGAACCTTTTCCAGCCTAAAAAGACATACCGC----------
-----------TTCCAATCCTACATGAACTCCACAC-GGAACGTGATCGATCCGGGCTTTCTGGGTTATATATA------
--TAGCGTAATGTACTTGAGGACGGGAAACAAG-GC-----ATCCTTAATTAA--CTCACTCCAGCCGTGCGCGTGAATA
CATCCAAC-----CACCATGGACGCAAAACTCCTACACTACGACCGGAGCGACGAACAACCTTCGATGGAGCGCCGGGAT
AAGCAGCCA-ACGGGTACGGTGACTGCCATGGATATGCTAATCCTGGTCTTCGTTCTGTGTATAGTTGGCCTACTTTTTT
GGGTTCTTGCTCTGGGTCTCGTCGGCTTGGAGGCATCCCAGCGACCGGAGTTCTCTGTGGTCATGGACGGATTCTCCGAC
CTCGAGGACCACGTCGCGCGGACGTTCAATCTCACCATCGTCATCAACAACTTTAGGGGCAAGTCCGAGATCTGCGTGGG
CGGCGAGGCAGTGGTCTTATACGGAGGAGTACCACTCGCCGGCTGCGGCGTGCAGGATCTGTGCGTGCCGCCCAAGTGCT
CCACGAAGTTTCATATCGTCGCCGCGAGCGGAGGGGTGGGCCTACCGAGGGAGCTGGCCGACCGCATGGCCGAGGAGAAG
CGCGCTGGCGGCGCGGTGCAGGTAGAGGTTCGCGTCGTCTCGCCGAAGCACCGCTCGTTCGTGTCGTGCATGGCGGCGCT
GGCTCGTGGGGCAGCGGCGCCGCCGTCCCCATGCCAGGGCGTGTTTCTCTCCGATGAATCCGACGGCGTTAGGCGTACGG
ATGACCCGCCCAGCTTTCTGTTCTGACTTCAGAGAAAGCTTGCATGCCTTTGCCAGTTTGTCTGCATTTTCCTTTTATTT
TCCAGTTGGTACATAATTCATGCATGTTGATGTACAAGAATTCTTGTTTTGTAAAATATGCTCTGGCCTATATGTACTTG
GATTTAGCGATGAACACGCTCCATCCTTTTCCTTCCTTTCCTTGAGGCATCGCCGTTCAGAACCTTTTTCGCAGTCAGGG
TGTTGCCAAAAGGCCAACGGCGATGATAGTTGTTGATGTTTCTCTTCAGGCGGATGTACACCTTGCCTTGACCTCTGTGG
ACCCTTTTTTTTTCCCGATGTGTCAATCC-TAATGGCTTGGCCTGTTCCCAATTTTAACATTGCAGAGGCACTTAGGCAA
GTCTTAGTCAAGTGGCAGAATATATAGGGAAGAAGAAAGAAAAAGTATAAATAAAATTTTGTGTGGATCTCCATATAAGA
TCTCACAAATTTAACATCGACTGAGATTTAGCAGTCCTGATTATCATTTAGAAAATAAAATGTGGATGGCATATGGCAAA
ACAAACCCGAATGATGAAGCGATAAAGAGACAAGTCCATCATGAAGCAATGTTGTTCATAAATATATACCGAGGGA-GGT
CAAAGGGGAGGTGTTATTAAGATTAAGTTCGACAGATGGGCTACCGAACGAATGCATAGGGTTAGCCAAGTGTAAATTGT
ACCAATGAATTCCTTGAATATATTTTTTCTTTGATGGCGGATCTGTCTTCCATGCAGTGTGCGCAG--------------
--AAAACCTTAAGGCTTCAAATAATCCCTTGCCCAAGTACTCCATCCGAAATGCTTTCTCAGATGCGCATCTATTAGATA
TTCTGGATGATTATGGTGTGGCTGTCGATTCCTCACATAATGGGATTTTATCACTAGTTAGAG-----------------
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---GGGATGCAACAGAGGTGGTTGTTGCATCTCTCTCTCTCTCTCGTTGCCGCGTCTAGGCAGCGAGGCGAGTGGCCAAA
GCGGTGAGCTCCAGGGGAGTCGCC
>chr2D_44
-------------------------------------------TGGTACCTGGTGGGACGGTCGGGGGAGAGGGGTTGAA
CGGCGATGGAGAAGAAGCGGGGTGGAGCCCGACTGGAACCCTGGAGGTGACGGAGACGTAGAGTTCCGGCAGGG-----G
TGTGGCGTGGCATGGCGGCCGGGGTGGTGGAGCGGCGGGGAAGGCAAGAGAGAAAGAAGGAAGGAGAGAAAATGGGGAGG
ATGGAGGCGCGGGGTCCGGGAAGGGTTTTGGGTGGGCCGGGGGTGTCGGAGTCCTACGTGTTTGTTGTCCGGACTCTCGC
AAAGCTGCCCATGTTTGTCTTCGGTTGCAGG-AGAAAATGCGTCCGAACCGTCCCGCGAACCGATACAAGAC--CGTTGG
ATGGTTTCCGCAGTCTGGACACAGTCTGGACAGCGCGGTGAGGACGTATGCGGGCGGTTTGCGGATTCGCTTTGAAGATG
CCCTTAATAATGGAAGCTACATGCACAAATATAAATGTGGCAAATTTTAGTACACAGTTAGATGAAGATTGTATGACGAT
TGTGTGTGCCAGT----------AAATAGTGTACTTAATCATTAAGTATATGTTC-ATATAATATGTTACGGCAAAGCAA
AATCTAGAGACGTATTCTCATGCTTTTATTGCCGTGGAGGTGTGAAGTAACTAGGTTGCTTACCCTGCGCCATAGGAGCA
AACACAGACGAGGTTTATGGACAAGCACAACACGATCGATTGATAATCTTCTCCGAAATCGATATGTACAACTTAATCAT
CTTGTGGTTAATTTTGATAACGAATTGCCAATCCAACGCGAACCTTT--CAACCTAAAAAGACATGCCTAAAGACATTAC
CCTTTCTGCCTTTCAAATCCTACATGAACTCCACACGGGAACGTGATCGATCCGGGCTGTCTGGGTTATATATA-----A
TATACCATAATGTACTCGAGGACGAGAAACGAAAGC-----ATCTTTAGTTAACTGTCACTTTAGCCGCGCGCGTGAATA
CATCGAAC-----CACCATGGACGCAAAACTCCTACACTACGACCGGAGCGACGAACAACCTTTGATGGAGCGCCGGGAT
AAGCAGCCA-ACGGGTACGGTGACTGCCATGGATATGCTAGTCATGGTCTTCGTTCTGTGTATAGTCGGCCTACTTTTTT
GGGTTCTTGCCCTGGGTCTCGTCGGCTTGGAGGCATCCCGGCGACCGGAGTTCTCCGTGGTGATGGACGGATTCTCCGAC
CTCGAGGACCACGTCGCGCGGACGTTCAATCTC-CCATGGTCATCAGCAACTTCAGGGGCAAGTCCGAGGTCTGCGTGGG
CGGCGAGGCAGTGGTCTTATACGGAGGAGTACCACTCGCCGGCCGCGGCGTGCAGGATGTGTGCGTGCCGCCCAAGTGCT
CCACGAAGTTGCCTATGGTCGCCGCGAGCGGAGGGGTGGGCCTACCGAGGGAGCTGGCCGACCGCATGACCGAGGAGAAG
CGCGCTGGCGGCGCGGTGCAGGTAGAGGTTCGCGTCGTCTCGCCGAAGCACCGCTCGTTCGTGTCGTGCATGGGGGCGCT
GGCTCGTGGGGCAGCGGCGCCGCCGTCCCCATGCCAGGGCGTGTTTCTCTCCGATGAATCCGACGGCGTTAGGCGTACGG
ATGACCCGCCCAGCTTTCTGTTCTGACTTCTGAGAAAGCTTGTATGCCTTTGCCAGTTTGTCTGCATTTTCCTCTTATTT
TCCCGTTGGTACATAATTCGTGCATGTTAATGTACAAGAGCTCTTGTTTTGTAAAATCTGCTCTGGCCTATATGTACTTG
GATCTAGCGATGAGCACGCTCCATCCTTGTCCTTCCTTTTCTTGAGGCATCGCCGTTCAGAACCTTTCTCGCAGTCAGAG
TGTT--------GCCAACGGCGATGATAGTTGTTGATGTTTCTCTGCTGGAGGATGTACACCTTGCCTTCACCTCTGTGG
ACCCTTTTTTT-TCCTGATGGGCCAATCCTTAATGGCTTGGCCAGTTCTCAATTTTAACATTGCAGAGACACTTAG----
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>chr2D_736
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----------------------------AACTCAATCGATTGATAGCCTTCTCCGAAATCGATATGCACAACTTAATCAT
CTTACGG-------------------------------------------------------------------------
------------TCAAATCCTACATGAACTCCACAAGGGAACGTGATCGATCCGGGCTGTCTGGGACTGTGGGTTATATA
TATAGCATAATGTACCCGAGGACAGGAAACGAGACATCTTTATCTTTAATTAACTCTCACTCTAGCCGCGCGCGTGAATA
CATCGACCCACTGCACCATGGAGGCAAAACTTCTGCAGCACGGCCGGAGCGACGAACAACCTTCGATGGAGCGCCGGAAC
AAGCAGCCAAACGGGTACGGTGACTGCCATGGATATGCTAGTCATGGTCTTCGTTCTGTGTATAGTCGGCCTGCTTTTTT
GGGTCCTTGCTCTGGGTCTCGTCGGCTTGGAGGCATCCCGGCTACCGGAGTTCTCCGTGGTCATGGACGGATTTTCCGAC
CTCGAGGACCACGTCGCGCGGACGTTCAATCTCACCGTGGTCATCAACAACTTCGGGGGCAAGTCCGAGGCCTGCGTGGG
CGGCGAGGCAGTGGTCTTATACGGAGGAGTGCCACTCGCCGGCTGTGGCGTGCAGGATCTGTGCGTGCCGCCCAAGTGCT
CCACGAAGTTCCATATCGTCGCCGCGAGCGGAGGGGTGGGTCTACCGGGGGAGCTGGCCGAGCGCATGGCGGACGAGAAG
CACGCTGGCGGCGCGGTGCAGGTAGAGGTTCGCGTCGTCTCGCCGAAGCACCGGTCGTTCGCGTCGTGCATGGCGGCGTT
GGCTCGTGGGGCAGCGGCGCCGCCGTCCCCATGCCAGGGCGTGTTTCTCTCCGATGAATCCGACGGCGTTAGGCGTACGG
CTGACCCGCCCGGCTTTCTGTTCTGA-------GAGAGCATGTATGCCTTTGCCAGTTTACCTGCATTTTCCTTTTATTT
TCCCGTTGGTACATAATTCGTTCATATTAATCTACAAGAGCTCTTTTTTCTGAAAATATGCTCTGGCCTATGTACTTG--
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>chr2D_2013
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-----------------------------------------------------------------------CTTAGGCAA
GTCTTAGTCAAGTGGCAGAATATATAGGGAA--AGGAAGAAAAAGTTTAAAATAAATTTTGCACAGATCTCCATGTAAGA
TCTCATAAATTTAGCATCGACTGAGATTTAGCAATCCTGATTATCATTTAGAAAATAAAATATGGATGGCATATGGCAAA
ACAAACCCGAATGATGAAGCGATAAAGAGACAAGTCCATCATGAAGCAATGTTGTTCATAAATATA-ACCGAGGGAGGGT
CAAAGGGGAGGTGTTGTTAAGATTAAGTTCGACAGACATACTACCGAACGAATGCATAGGGTTAGCCAAGTGTAAATTGT
ACCAAAGAATTCCTTAGATAC---TTTTTTTTGATGGCGTATCTGTCT-CCATGCAGTGTGTGCAGCTTCGGGCGGCAGA
CAAAAACCTTAAGGCTTCAGATAATCCCTTGCCCAAGTACACCATCTGAAATGCTTTCTTTGATACGCATCTA-------
--CTGGATGATTGTGCTGTGGCTGTCGATTCCTCACATAATGAGATTTTATCACTAGTTAGAGTGAGAAAACTGCAGCCA
AAGTTGTGGCCAATGCCTTGTCGACGGTTTCAGCTGTCGGGGTTGCTGGGCCAGAGGCCGATGTGCCCGTGGGAGCCGTG
GGGGGGATGCAGGAGAGGTGGTTGTTGTATCTCCCTCTT------GTTACCGCGTGTAGGCGGTGAGGCGAGTGGCCAAA
GCGGTGAGCTCCAGGGGAGT----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SSS---------S--------------
----S------------S------------S----S---------------------S----------------SSSSS-
-----SS-------------------------------S-----------------------------------------
--------------------------------S--S-------------------------S--------------S---
--SSSSS-------S-----S-----SSS--S--------SS-SS-S----S-----SS------S------SS-S----
---SS----S-S-------------S---------S---SS-----S-------S--------SS---------------
----------------------------------------------------S---------------------------
-------------SSSSSSSSSS-----S----S----------SSSSSS-SSSSS---------------------S--
------S----S------------S--------------------------------S-S--------------------
-----------------------------------------------------------S--------------------
--------S--------S-----------------------------SS--S-------------S--SS----------
--------------S-------------------------------------------S---------------------
------S---------S-------------S-------------S-----------------S-----S-----------
----S---------------------------------------------------------------------------
----------------------------------------S--S----------------------S-------------
---------------------------------------S---------------S------------------------
--------------------------------------S--------------S---------------S----------
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----------S---------------------------------------------------------------------
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------------------------------S-----------S-------------------------------------
---S---------------S--------S----------SS---------------------------------------
---S---------S--------------S----------S---------------------------S----------S-
----SSSSSSSS---------------------------------S-S--S------------------S----------
-----------S---S----S-S--------------------S----S-------------------S-----------
-------------------------------SS--S----------S----SS--------SSSS---------S-----
-----S-------S-------------------S---------------------------S------------------
------------------------------------------------------------------S-------------
---------------S--------------------SSSS----------------------------------------
-----S---------SS---SSSS----S----------S--------S------------S------------------
-------------------S--------------------S-----S------------SS---S--------SSSSSSS
SS----------S--S--------------------------S-------------------------------------
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-----------SS--------------S-----S----SSSSSSS---S------S-----S-S----------------
--------------------SSSS
>forward_852
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--------------------------------CCAACGCGAACCTTTTCCAG----------------------------
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>reverse_2576
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---------------GTGTGGCTGTCGATTCCTCA---------------------------------------------
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