>input_sequence_72857
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---------------------------ATGCCACCCTCCGGCCTCCTCTCCTACATCCCGACCAGCTTCTCCTCCATCCT
CCCTGTCCGCGGCTGCGCCGCGCCCCCCTCGCCGTCTCCGTCTCCGTCGCCGGCGCCTCCACCGGCAGCGTCTCCGGCCC
CGAGCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGC
GACGGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGC
CATGATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGCGAGCTCTACCGCACCATCATGT
CGACGAGCAGCGGCGGGGACCAGAAGGATTCGT------------------CGGACGAGGAA---------------GAG
GACGAGGACATGCGGGAGGCGTTCCGCGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGT
GCTGGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTCGACCGCGACGGCG
ACGGCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGA------------
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>chr2A_1_TraesCS2A01G349100
ATTTTCCGAACGGAGGGAGTACACCATATTTCAGAATTTTTTTTCAATAGCACCAAATTAAAGGGGAGTAGCTCTCCTCT
TCTCTTATTTTCCACACACACACACACACACACACACACACACACACACACACACACATATATATATACACATCAATACC
AACGTTGATCAACTCTAGCAAGCTCCATATTTCTACACAGACATTAAATAAAGTGCCATTTAAATTTTGTCTCTGCTGTT
ATTTCAGCATGATCATATGTGAGTT-GTGCAATAATAGTATATTTGACGAAAGATGTAACTTTCTTCAT-CAAGAGCTGG
TTTGCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCAGCA--
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ATTTTTTTTGTCTACTTTTGACACGCAAAAAAAAA-A--CATATGTATTTTTCCCAAAACATATAAATGTGATTTTTTTT
TCAAATTTCGTGAAATGGGTTCATACGT--AGACATGTCCAGAGTAGCATGTTCCTATACTTGGAACACATACTTCCCGC
A-AACGTATTTGTACCGCTGTTCGTCCTTTATTTTTTGCGAGTCATACCGTTTTTCGATGGGATATTATGCATACCAGTA
CAATGCT--TCTA-GGCAAGGGGAAAAACCCGAGTAAATTAAGTAAGACAAAATGACACTTTATTTGGAAGTCAAATCAA
GACACGGGGAAATGGAGTCCGTCCCAAATTCTTCATCGACTGAACTC-CATTTTTTAAAGCAATAGAGTT----------
----------------------------------------CATCGACTGAACTCTTGACATATAAGGACACGGAAGCACT
TTATCCCTTTTACAAGAAAAAAAGAAAGAGAGCAATACGCGAGAAAGGAGTAGTATAAATACAACCCTGGTCCACGGCAA
AAGCTTTGCGCCAACACCACCACCACCAAACTCTCTCCCACCCAACTCAACTCGAGCGATCTTCCTTCAAAGCCTCCACA
GCGAGCAAAGCAACAC---CACCCTCCATGCCACCCTCCGGCCTCCTCTCCTACATCCCGACCAGCTTCTCCTCCATCCT
CCCTGTCCGCGGCTGCGCCGCGCCCCCCTCGCCGTCTCCGTCTCCGTCGCCGGCGCCTCCACCGGCAGCGTCTCCGGCCC
CGAGCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGC
GACGGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGC
CATGATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGCGAGCTCTACCGCACCATCATGT
CGACGAGCAGCGGCGGGGACCAGAAGGATTCGT------------------CGGACGAGGAA---------------GAG
GACGAGGACATGCGGGAGGCGTTCCGCGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGT
GCTGGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTCGACCGCGACGGCG
ACGGCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGATCGACTTCGAC-
-----TGATGCTGATGAATGTGCGCTTTGTATGCTTGGTTGG---TAGCAGGTGTATGTAGATATCTGGCTCGGGCCGGG
GCGAATCCGTGTAACCGCTCCCGAAATTCATCTCGTTTTTTCCGGTTTGTTTGTTCCTTCGTACGCTTAATCTAAGATGT
ACTGTAAGATTGATGGGCTTGCAGATTAATGGTTTGTAC-GCTTGCTGCTCGCAAGAGTTACTTGGAAGAATTACCACAA
GG--------TTTTGTTCGTCGTGTGCACGTAAACACTGTAGCGCATCTCTTGGCGCCAGATTCTGTCGTT-----GAGT
TGAGTTGAATCCGGCGTCTCTGCTTGGCTATTTGCGAACATTCCGGCAGAGTCTCGCTGCTGGTCTGCGTGCTTCGTGGC
ACTGGCTGGATCTGAAATGTGCAATTGTGCACCC--------AAGAGTTGAGTTGACCCGCCC--------CC-------
--------------ATTGCACTTCACGATGCATGTGACGATGGGCTCACCGGCTAGCTCGGACGAATTAGATATTTGTGT
CCTCTCTCCCCTAG-----------------------AGACTAGAGTAGGAGCAT---------GAGCTAGCGGCACAGC
GATCTGCCAGTCGGCCGATCGACGCGCTTCCTGCGCGGCCCACCCAAGTAAGGCCATCTTCAATGCGGACCCGCAAACTT
TTCGTAACTGTTCAGCACACATGTTTCATTGTGTGAGCCGGATGCGATTTCTCTTACAAATCAAAGACAAAAGTGAAGGA
GGTTTATTAGAGCCCGGACCGATTCTAAGTCCGCTTTTGACCATCCTGACCCACCAAAAACCTCTACCCTTTCCCGCGCG
TTTTCAGTTTGCGCCCGCATTCATGCCCAGCTAGAGCGGACGCGGCCGCTCACCGGCGCCGGCATGGAAGCTTTTCGGTG
CAGGCGACCGTCGCGCGTTTAAACGACACGACGGCCGCCCGTCCGTCCGTCTGCCGCCCGCATTGATGGCACACGGTTGC
CGAGGCTTCTCCTCCGACGCCACACATCCGTCCCTCTGTC
>chr2D_24
-----------------------CCATATTTCAGATTTTTTTCAGTAGGG--CCAAATTAAAGGGGAGTAGCTCTCCTCT
TCCCAGATATAT---------------------------------------------------------------ATACC
AACGTTGATCAACTCTAGCAAGCTCCATATTTCTACACAGACATTAAATAAAGTGTCATTT------TGTCTCTACTGTT
ATTTTAGTATGATCATATGTGAGTTA-TGAAACCATAGTATATATAAAGAAAGATGTAACATTTTTAAC-CAAGAGCTGG
TTTGCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAATTGCGCGTGGGTTCGAACCCCACAGCCAGCA--
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--TTTTTTTGTCTACTTTTGACACGCAAAAAAACACATGCACATGTATTTTCCCCAAAACATATAAATGCGATTTTTG--
-CAAATTTCGTGAAATGGGTTCATATACGCAGACATGTCCAGAGTAGCATGTTCCTATACATGGGACACAGAATTTCAG-
----------TGTACCGTTGTTCGTCCTTTTTTTTCCGAGT-----------------------------CATACCAGTA
CAGTGCT--TCTAAGGCAAGGGAAAAAACCAGAGTAAATTAAGTAAGACAAAATGACACTTTATTTGGAAGTCAAATCAA
GACCCGGGAAAATAGAGTGCGTCCCAAATTCTTCGTCGACTGAACTCTCATTTTTAAAAGCAATAGAGTT----------
----------------------------------------CATCGACTGAACTCTTGACATACGAGGGCACGGAAGCACT
TTATCCCTTTTACAAGAAAAG------GAAAGAAAGACGCGAGAA---AGTAGTATAAATACAACCCTGGTCCACGGCAA
AAGCTTTGCGCCAACACCACCACCA--AACCTCTCCCCCACCCAACTCAACTCGAGCGA----CCTTCAAAGCCTCCACA
GCGAGCAAAGCAACACTACCACCCTCCATGCCACCCTCCGGCATCCTCTCCTACATCCCGACCAGCCTCTCCTCCATCCT
CCCGGTCCGCGGCTGCGGCGCGGCCCCCTTGCCGTCTCCGTCGCCGTCGCCTCCAACTCCACCG---GCGTCCCCGGCCC
CGAGCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGC
GACGGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGC
CATGATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGGGAGCTCTACCGCACCATCATGT
CCACGGGCGGTGGCGGGGGCCAGAAGGGCTCGTCGGGCGAGGAGGCGGCGGCGGAGGAGGAC---------------GAG
GACGAGGACATGCGGGAGGCGTTCCGTGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGT
GCTGGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTGGACCGCGACGGCG
ACGGCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGA------TCGAC-
-----TGATGCTGATGAATGTGCGCTTTGTATGCTTGGTTGGTACTAGCAGGTGTATGTAGATATTTGGCTCGGGCCGGG
GGGAATCCGTGTAACCGCTCCCGAAATTCTTCTCGTTTTTTCTGGTTTGTTTGTTCCTTCGTACGCTTAATCTAAGATGT
ACTGTAAGATTGATGGGCTTGCAGATTAATGGTTTGTACTGCTTGCTGCTCGCAAGAATTGCTTGGAAGAATCACCACAA
GGTTTTGTACTTTTGTTCGTCGTGTGCATGTAAACACTGTAGCGCATCTCTTGGCGCCAGATTCTGTCAACTCTTCGAGT
TGAGTTGAATCCGGCGTCTCTGCTTGGTTATTTGCGAACATTCCGGCAGAGTCTCGTTGCTGGCCTGCGTGCTTCGTGGC
A----CTGGATCTGAAATGTGCAATTGCGCAT---------CAAGAGTTGAGTCCCCTTTTCCCGCTATTACC-------
--------------ATTGCACTTCACGATGCATGTGACGATGGGCTCAGCGGCTACCTCACACGAATTAGATATT-----
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>chr2B_138
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---------------------------------------------------------ATATATATATATACACGAATAGC
AACGTTGATCAACTATAGCAAGCCCCATATTTCTACCCAGGCATTAAATAAAGTGTCATTT------TGCCTCTACTGTT
ATT-TAGCATGACCATATGTGAGTTTGTGCAATCATAGTATATTTTACGGAACATGTATCTTTGTCACAGCAAGAGCTGG
TTTGCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCAGCATG
TTTTTTTGTTTACCTTTTTTTTACGTTTAAATAGAGCTACAGTGAGAAATTGGCATCGATATGCTGGTTTGCCCGAGTGG
TTAAGGGGGAAGGCTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCCGAACCCCACAGCCAGCATTTTTTTTGTTTAA
TATTAATATTGACATGCAAAAAAACACACACATGTATTTTTTCCAAAATATGTAAATGCGACTTTTGCCAATTTCGTGAA
ATGGGTTCATACGTAGACATGTCCAGAGTAGCATGTTCCTATACATGGAACAGTACTTTGGTTCGAACCCCACAGCCAGC
ATTTTTTTTGTTTAATATTGACACGCAAAAAAACACA--CACATGTATTTTTTCCAAAATATGTAAATGCAACTTTTG--
-CCAATTTCGTGAAATGGGTTCATACGT--AGACATGTCCAGAGTAGCATGTTCCTATACATGGAACACGTACTTTCAGA
ACAACGTATTCATACCGTTGTTCGTCCTTTATTTTT-GCGAGTCATACCGTTTTTCTGTGGGATATATTACATATTACTA
GTATTTACATCTA-GGCTAGGGAAACCCCAGTAACAAATTAAGTAAGACAAAATGACGCTTTATTTGGAAGTCAAAT-AA
GACCCGGGAAAATAGAGTCGGTCCGAAATTCTTCATCGACTGAACTCTTTTTAAATGTTTTTTTTTGCGTGTCAAAAGTT
AGACAAGAAATATGCTGGCTGTGGGGTCCGAACCCACGCGCATCGACTAAACTCTTGACATACAAGGACACGGAAGCACT
TTATCCCTTTTACAAGAAAAA------GAAAGAAAGACGCGAGAA---AGTGGTATAAATAGAACCCTGGTCCACGGCAA
AAGCTTTGCGCCACCACCACCACCA--AACTTCTCCCCCACCCAACTCGACTCGAGCGA----TCTTCAAAGCCTCCACA
GCGAGCAAAGCAAC---ACCACCCTCCATGCCACCCTCCGGCCTCCTCTCCTACATCCCGACCAGCCTCTCCTCCATCCT
CCCGGTGCGCGGCTGCGCCGCGCCCCCCTCG------------CCGTCGCCTCCAACTCCGCCG---GCGTCCCCGGCCC
CGAGCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGC
GACGGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGGGACGAGCTGGCCGC
CATGATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGCGAGCTCTACCGCACCATTATGT
CGACGGGCAGCGGCGGGGC---GAAGGGCTCGT------------------CGGGCGAGGAGGCGGAGGCGGAGGAGGAC
GACGAGGACATGCGGGAGGCGTTCCGTGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCGGT
GCTGGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTGGACCGGGACGGCG
ACGGCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGA------TCGACT
ACGACTGATGCTGATGAATGTGCGCTTTGTATGCTTGGCTGGTA---GCAGGTGTATGTAGATATTTGGCTCGGGCCGGG
GGGAATCCGTGTAACCGCTCCCGAAATTCTTCTCGTTTTTTCTGGTTTGTTTGTTCCTTCGCACGCTTATGCTAAGATG-
---------TTGATGGGCTTGCCGATTAATGG-TTGTACTGCTTGCTGCTCGCAAGAATTACTTGGAAGAACT---ACAA
GGTTTTGTACTATTGTTCGTCGTGTGCATGTAAACACTGTAGCGCATCTCTCGGCGTCAGATTCTGCCAACTCTTGGAGT
TGAGTTGAATCCAGCGTCTCAGCTTGGTTATTTGCGAACGTTCCGGCAGAGTCTCGCTGCTGGCCTGCGTGCTTCATGCC
A----CTGGATCTGAAATGTGCAATTGTGCACCCCAAGAGGCAAGAGTTGAGTTGACACGTCC--------CTTTTCCCG
CTATTTTGCCATTAATTGCACTTCACGATGCATGTGATGATGAACACAGTGGCTACCCCAGACGAATTAGATATTTGTGT
CTTCCCGCCAATTTTTTTTTTGTGTCCTCTCTCCCCTAGACTAGAGTAGGAGCATTGCAGCAAAGAGCTAGCGGCACAGC
GATCTGCCAGTCGGCCGATCGACGCGCTTCCTGCGGGGCCCGCCCCATGTAA----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSS------------S------SSSS-SS-SS----------------------------
--S-SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---SS------
-------------------------------------------------------S-----SSSSSS-------S-----
----S----------------------------S-----------S-----------------S--S-S-----------
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---------------------------------S-------S---------------------------S-------SSS
S-----------------------------------------------------------S--------------S-S-S
-----------------S------------------S-------------------SS--------SS-S----------
----------------------S-------S-------------------------------------------------
---S----S----S------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------------------SSSSSS--S--S--S---------SSS--------------------------------
-------------------------SS--S-----S-----------------------SSSS-----------------
------------------------------------------------------------------S-------------
---S--------------------------------------S--------SS-SS--------SSS-----S-------
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-----S------------S--------SS--------------------------------S------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------SSSSSS------
-----------------------------------------------------------------S--------------
-S---------------------------S------------S-------------------------------------
---------------------------------------------------------S----------------------
----------------------------S---------------------------------------SSS---------
---------------------------S-----------------------------------S----------------
-SSSS----------------------------------------------------S--S-------------------
------------------------------------------------S------S---S--------------------
-S--S-S--SS-SS------------------------------------------------------------------
-----------------------------------S-----S---S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_110
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----------TCCACACACACACACACACA--------------------------------------------------
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>reverse_1779
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------------------ACCAGAAGGATTCGTCGGAC------------------------------------------
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>forward_1340
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----------------------------------------CCCAACTCAACTCGAGCGAT--------------------
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>reverse_2890
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---------GAGCCCGGACCGATTCTAAG---------------------------------------------------
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