>input_sequence_72852
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----ACACAACAACGCCCAGCCAGGTGCAAACTGAAAACTGCAATGGCGAACACAACAAGATCCATAGCTATTGTTCTTA
TTGTGCTTGCGGCCTTGTCCTTTGGTTTCCCTGCCATCGATGCCGACGCCACCCTCCTCGTCAAGACATGCAAGAAGACC
ACAAACGCCTTGTTGTGCCTGGCAGTGTTGAACGTCGACCCAAAGAGCGCCTACGCCACCACCGAGCACGACCTTGCCAG
CGCCGCACTGCAGGTCGCAATTAACACTGCTGACCACAACGTCGAGGTCATCCACAACTTAGCCAAGGATGTCCAAGGCA
CACCTGAAGGAGGCGCGTTGAACATCTGCCTCGGGGCCTATGTTGATGCCGCCAACGACCTCGAGATCGACGCTCGCCCC
GGTTTTGATGGCGGGAACTATGTCGGCGCAAGGAATCTCGTGTTGGGTGCCAAGGGCGCCGGTGGTAGATGCGAGGATGC
GTTCAAGGGGATCAACAAGAAGTCCCCGGTGACAAACATAGATCAACAGATGACAGAGCATTGTGGCGTCGCAGGTGAAC
TCATTGGCCTTCTTATACACAAGTGATCTGTCCTAAATG--AATCTCTTCTCATATGTACAATCCCCCGTCAATAATGAA
TGAGCAGGTCATCT------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G059200
TATATTTTTCATACACAACAAATATATTCAAGATAGCATTGAAGTTTTTCTAAATACACTATTAATAATTTTAAACAAAT
GATACCCATTTTTGAAGAGCACAGTCAATTTTCCTCCTGCA----AAAAAACAG-TTTTCTAAAATATCATGACAAGCGT
AAATAAAGGTTTGTATTTCTTGCCTTTAATGAGCAAGAAAAGAAAAATCAAAATCAATACTTTTTTTTGAGGAACAT---
-------------------------CAAAATCAATACTTGAGCAGAAAAAATGTAACAGAAAAACTGGGCCGAGAAACCT
AGAAAACCGTACATTAGGGAACTCGTACTGCCCAATCGGTGAGCAAATATATCGGCACTGAACCAAAATCTTCCCTAAAA
AAGGCACTGAACCAAAACCACAATATATTTGATTTGCTACAATTAATGTCGGTACATTTACTACTTATCTATTGAGAGCA
CAATTTTACATT-ATTAATTGATTTGATAGGATTTCTTTTGAAGATTTGTATTTTCATTCATCTATACCAATATAAAAAG
ACCCAAAGAGGCAGATCCAATTAATCTCGGTCATCAAATCATATCAATCCAATGACCTAGACTGCTTCAATGTCGAGCGC
TCAACACGTTTAGTGTGCAGTTAATTTCATGCCAAACATAGTGTTAATCACATAATAACACGCAAATAATATCCTACTTA
ATATCTGCATGCACTTAATATACTTCCAAATTAACGTGCATTGCACGTACACATTGACTAGTAATGAAAAGGTACTAGGA
TGGGATTTCTGAACTCAGTGAAAGTATATAGAGTACATTTATTTTGTTGATTTGGTATATTGCACATTTAAGTGACTAAA
TCACTATTTGATTCGCTAGATTAATTCAG----------TTTGCTATTAAATTTGATGTAGAGAAAGGAATAAATATACC
ATCCTTCAGGCGGATCCTATCATAAGGATTTTCCCTTGCGCATGTCTTACATATATAGATGAAAGAGTCACATATACTAC
ACCAACACAACAACGCCCAGCCAGGTGCAAACTGAAAACTGCAATGGCGAACACAACAAGATCCATAGCTATTGTTCTTA
TTGTGCTTGCGGCCTTGTCCTTTGGTTTCCCTGCCATCGATGCCGACGCCACCCTCCTCGTCAAGACATGCAAGAAGACC
ACAAACGCCTTGTTGTGCCTGGCAGTGTTGAACGTCGACCCAAAGAGCGCCTACGCCACCACCGAGCACGACCTTGCCAG
CGCCGCACTGCAGGTCGCAATTAACACTGCTGACCACAACGTCGAGGTCATCCACAACTTAGCCAAGGATGTCCAAGGCA
CACCTGAAGGAGGCGCGTTGAACATCTGCCTCGGGGCCTATGTTGATGCCGCCAACGACCTCGAGATCGACGCTCGCCCC
GGTTTTGATGGCGGGAACTATGTCGGCGCAAGGAATCTCGTGTTGGGTGCCAAGGGCGCCGGTGGTAGATGCGAGGATGC
GTTCAAGGGGATCAACAAGAAGTCCCCGGTGACAAACATAGATCAACAGATGACAGAGCATTGTGGCGTCGCAGGTGAAC
TCATTGGCCTTCTTATACACAAGTGATCTGTCCTAAATG--AATCTCTTCTCATATGTACAATCCCCCGTCAATAATGAA
TGAGCAGGTCATCTAGCAACATATTTTGGTCCTGGATGCAGTTGTGAATTACGGAGCTTAACAACACAAAAAAGAACAGT
CTTACCAACTAGGCAACTTGGGTACTCTAGTGCCGAAAGCGACCAAGCGCGATAGCTCCTATTTCGAC------------
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-----------ATATGTGCACTGATCTAGCACCA--AACCAACAATTTAGTCTCGGTCACAGTTCCATAGCACCAGGTAC
ATGAAGAAAAGGACCCCCTCCCGTTTAATCTCGCAATCCCACACGGTAAGGTTGTTCCCTCGTAACAACCAATCCTAAAG
AG-GTATTAAGGGATTCAAAGGTCGTATACTCAGGCCAGTCACAAAATGAGACAAAGGCCAGCCACAAAATATCAGATCA
TAACCAATTTTTACAGGTGCATTCTTTTTAAGTTGTATAATCAGATATTTGGATATATATAGATATATACATGTAGTCAA
TGGCCCTCCAGGTAACTATTTTTTTGAATAAATTCTTGTCTTACTCCAAAAAACTTAAGAATTACAATCAAGTTCAAAAA
ATTCTAAAGCGCCGGGGGCCCTCCAGGTAACTAGCCCTCTGCTCCTCCAACCGAAGCCTATGTGTTTTCCTTTACTCATA
CATCTTGGTTTTGTTAATATACTTAGTGCTCCAGAAGACATAGTTTCCTTACAGTACTCTACTCGTGAAATGAAATGCAG
GATCTTTGATTCCGGCAAACACTGATTTTGGCGATTCAATGATTCCAAGCACTAGTGAGATCAAAACCAAGCCGGATGGT
CGGGAGTGACCTGTCTATAAGGTAAATAAAGTGACTCATATATGCTCTATCCCATCTGATCATTTCCCTGTTTGGGTACA
ACGTGGGAGGAGGAGTATTTAACAAAAAAACTACCACATTTCGCGTAACCATGCCTACAAGCTACCACTTTGCAAATTTG
TGCCGAAAACTACCATTTTTTTATTAATCTTTGACTAAAAACTACCGTGTCTGAAAAGTGGCTGATTCGGCTAGTCTAAA
>chrUn_1
TATATTTTTCATACACAACAAATATATTCAAGATAGCATTGAAGTTTTTCTAAATACACTATTAATAATTTTAAACAAAT
GATACCCATTTTTGAAGAGCACAGTCAATTTTCCTCCTGCA----AAAAAACAG-TTTTCTAAAATATCATGACAAGCGT
AAATAAAGGTTTGTATTTCTTGCCTTTAATGAGCAAGAAAAGAAAA-----------------------------AT---
-------------------------CAAAATCAATACTTGAGCAGAAAAAATGTAACAGAAAAACTGGGCCGAGAAACCT
AGAAAACCGTACATTAGGGAACTCGTACTGCCCAACCGGTGAGCAAATATATCGGCACTGAACAAAAATCTTCCCTAAAA
AAGGCACTGAACCAAAATCACAATATATTTGATTTGCTACAATTAATGTCGGTACATTTACTACTTATCTATTGAGAGCA
CAATTTTACATT-ATTAATTGATTTGATAGGATTTCTTTTGAAGATTTGTATTTTCTTTCATCTATACCAATATAAAAAG
ACCCAAAGAGGCAGATCCAATTAATCTCGGTCATCAAATCATATCAATCCAATGACCTAGACTGCTTCAATGTCGAGCGC
TCAACACGTTTAGTGTGCAGTTAATTTCATGCCAAACATAGTGTTAATCACATAATAACACGCAAATAATATCCTACTTA
ATATCTGCATGCACTTAATATACTTCCAAATTAACGTGCATTGCACGTACACATTGACTAGTAAAGAAAAGGTACTAGGA
TGGGATTTCTAAACTCAGTGAAAGTATATAGAGTACATTTATTTTGTTGATTTGGTATATTGCACATTTAAGTGACTAAA
TCACTATTTGATTCGCTAGACTAATTCAG----------TTTGCTATTAAATTTGATGTAGAGAAAGGAATAAATATACC
ATCCTTCAGGCGGATCCTATCATAAGGATTTTCCCTTGCGCATGTCTTACATATATAGATGAAAGAGTCACATATACTAC
ACCAACACAACAACGCCCAGCCAGGTGCAAACTGAAAACTGCAATGGCGAACACAACAAGATCCATAGCTATTGTTCTTA
TTGTGCTTGCGGCCTTGTCCTTTGGTTTCCCTGCCATCGATGCCGACGCCACCCTCCTCGTCAAGACATGCAAGAAGACC
ACAAACGCCTTGTTGTGCCTGGCAGTGTTGAACGTCGACCCAAAGAGCGCCTACGCCACCACCGAGCACGACCTTGCCAG
CGCCGCACTGCAGGTCGCAATTAACACTGCTGACCACAACGTCGAGGTCATCCACAACTTAGCCAAGGATGTCCAAGGCA
CACCTGAAGGAGGCGCGTTGAACATCTGCCTCGGGGCCTATGTTGATGCCGCCAACGACCT-------------------
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>chrUn_1
TATATTTTTCATACACAACAAATATATTCAAGATAGCATTGAAGTTTTTCTAAATACACTATTAATAATTTTAAACAAAT
GATACCCATTTTTGAAGAGCACAGTCAATTTTCCTCCTGCA----AAAAAACAG-TTTTCTAAAATATCATGACAAGCGT
AAATAAAGGTTTGTATTTCTTGCCTTTAATGAGCAAGAAAAGAAAA-----------------------------AT---
-------------------------CAAAATCAATACTTGAGCAGAAAAAATGTAACAGAAAAACTGGGCCGAGAAACCT
AGAAAACCGTACATTAGGGAACTCGTACTGCCCAACCGGTGAGCAAATATATCGGCACTGAACAAAAATCTTCCCTAAAA
AAGGCACTGAACCAAAATCACAATATATTTGATTTGCTACAATTAATGTCGGTACATTTACTACTTATCTATTGAGAGCA
CAATTTTACATT-ATTAATTGATTTGATAGGATTTCTTTTGAAGATTTGTATTTTCTTTCATCTATACCAATATAAAAAG
ACCCAAAGAGGCAGATCCAATTAATCTCGGTCATCAAATCATATCAATCCAATGACCTAGACTGCTTCAATGTCGAGCGC
TCAACACGTTTAGTGTGCAGTTAATTTCATGCCAAACATAGTGTTAATCACATAATAACACGCAAATAATATCCTACTTA
ATATCTGCATGCACTTAATATACTTCCAAATTAACGTGCATTGCACGTACACATTGACTAGTAAAGAAAAGGTACTAGGA
TGGGATTTCTAAACTCAGTGAAAGTATATAGAGTACATTTATTTTGTTGATTTGGTATATTGCACATTTAAGTGACTAAA
TCACTATTTGATTCGCTAGACTAATTCAG----------TTTGCTATTAAATTTGATGTAGAGAAAGGAATAAATATACC
ATCCTTCAGGCGGATCCTATCATAAGGATTTTCCCTTGCGCATGTCTTACATATATAGATGAAAGAGTCACATATACTAC
ACCAACACAACAACGCCCAGCCAGGTGCAAACTGAAAACTGCAATGGCGAACACAACAAGATCCATAGCTATTGTTCTTA
TTGTGCTTGCGGCCTTGTCCTTTGGTTTCCCTGCCATCGATGCCGACGCCACCCTCCTCGTCAAGACATGCAAGAAGACC
ACAAACGCCTTGTTGTGCCTGGCAGTGTTGAACGTCGACCCAAAGAGCGCCTACGCCACCACCGAGCACGACCTTGCCAG
CGCCGCACTGCAGGTCGCAATTAACACTGCTGACCACAACGTCGAGGTCATCCACAACTTAGCCAAGGATGTCCAAGGCA
CACCTGAAGGAGGCGCGTTGAACATCTGCCTCGGGGCCTATGTTGATGCCGCCAACGACCT-------------------
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>chr1D_1
TATATTTTTCATACACAACAAATATATTTAAGATAGCATTGAAGTTTTTCTAAATACACGATTAATAACTTTAAACAAAT
GATACCCATTTTTGAAGAGCACAACCAGTTTTCCTCCCCGCAAAGAAAAAACAGTTTTTCTAAAATATCATGACAAGCGT
AAATGAAAGTTTGTATTTCTTGCCTTTAATGAGCAAGAAAATAAAA-----------------------------ATCAA
AATCAATACTTTTTTTGAGGAACATCAAAATCAATACTTGAGCAAAAAAAATGTAACAGAAAAACTGGGCCGAGAAACTT
AGAAACCCGTACATTGGGGAAATCGTACGGCCCAATCGATGAGCAAATATATCAGCACTGAA------------------
-----------CCAAAATCACAATGTACTTGATTTGCCACAATTAATGCCGGTACATTTACTACTTATTTATTGAGAGCA
CAATTTTACATTTATTAATTGGTTTGGTAAGATTTCTTTTGAAGATTTGTATTTCCTTTCATAAAT--------------
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------------------------------------------------------------------AAAAGATACTAAGA
TGGGATTTCTAAACTCAGTGAAAGTATCA--AGTACATTTTT--------TTTGGTATATTGTACATTTAAGTGACTAAA
TCACTATTTGATTCACTAGATTAATTCAATTTGCTATAATTTGCTATTACATTTGATGTAGCAAAAGGAATAAATATACC
ATAGTTCAGGCGGATTGTATCATAAGGATTTTCCCTTGCGTGTGTCTTACATATA--GATGAAAGAGTCACATGCAGTGC
ACCAACACAACAACGTCTAGCTAAGTGCAAACTGAAAACTGCAATGGCGAGCACATTAAGATCCTTAGCTATTGTTCTTA
TTGTGCTCGCCGCCGTGTCCTTTGGTTTCCCTGCCATCAATGCCGACGCCACCCTCCTCGTCAAGACGTGCAAGAAGACC
ACAAACGCCTTGTTGTGCCTGGCAGTGTTGCACGTCGACCCAAAGAGCGCCTACGCCACCACCGAGCACGACCTTGCCAA
CGTCGCACTGCAGATCGCAAGTAACACCGCTGACCACAACGCCGAGGTCATCCACAACCTAGCCAAGGACGTCCAAGGCA
CGCCCGAGGGAGGCGCGTTGAACATCTGCCTCGGGGCCTATGTTGATGCCGCCAATGACCTCGAGATCGACGCTCGCCCC
GGTTTCGATGGTGGGAACTATGTCGGCGCGAGGAATCTCGTGTTGGGTGCCAAGGGCGCCGGTGGTAGATGCGAGGTTGC
GTTCAAGGGGATCAAAAAGAAGTCCCCCGTGACAAACATAGATCAACAGATGACAGAGCGATGTGGCGTCGCGGGTGAAC
TCATTGGCCTTCTTATACACAAGTGATCTGTCCTAAATCAAAATCTCTGCTCATATGTGCAATCTCCCGTCAATAATTAA
TTGGCAGGTCATCTAGCAACATATTCTGGTCGTGGATGAC--TGTGAATTACCAAGCTTAACAACGCACAAAAAAACAAT
CTTACCAACTAGGCCACTTGGGTACTCTAGTGCCGAAAGCGACCAAGCACGATAGCTCATGTTTCGAGCAGATCCATGTA
TCAACTACGATATATGTGGCGAACTGACATGTGGTTGGATGGTTAGAGGGACTGTGGTATCTCCAGTCCACCAAGGTTTA
AGTCTTGGTGCTCGCATTTATTCCTGGATTTATTTCAGGATTTTCGACGATGCGCACCCAGTGGGAGGAGACGTTCCCGT
CGACGACGGGGTGGCTACGGTGACTTCGTAAATTTCAAGATGATATGCCGGCTCAGTCTTTCGGAGGTGCTCATAGGGGT
AGGGTGTGCGTGTGTGCGTTCATAGGGGTGAGTGCGTGCGCGTATATATGAGCGCTTTGCGTCTGTACTGTTTTCGAAAA
AAAACTACGATATATGTGCACTGATCTAGGGCACTGAACCAACAATTTAGTCTCGGTCACAGTTCCATAGCACCAGGTAC
ATAAATAAAAGGATCCCCTCCCGTTCAATCTCGCAATCCCACACGGTAAGGCTGTTCCCTCATAACAACCGATCCTAAAG
AGAGTATTAAGGGATACAAAGGTCATATACTAAGGCCAGTCACAAAATGAGACAAAGGCCAGTCACAAAATATCAGATCA
TAACCAA-TTTTACAGGTGCATTCTTTTTAAGTTGTAAC--CAGATATTTTGATAC--------ATATACATGTAGTCAA
CGGCCCTCCAGGTAACT---------------------------------------------------------------
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>SNPs
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----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
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---------------------------------------------------------------S----------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------S-----------------------
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----------------------------------------------------------------S---------------
----------S---------------------------------------------------------------------
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-----S-----S-----------------S----------------------------------------------S---
---------------S-----------S-------------------------------SS-----------S-------
--------------------------------------S---------S---------S-----S------------S--
-SS----------------------S-----S------SSSS----------SS-----------S--S----S----S-
--------------S---------------------------------S---------S-S------S------------
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-----------------------------SS-SS----------------------------------------------
--S--S-------S-----------S-------------------------S---------S--------S---------
---------------S--------S------S------------------------------S-----------------
-------S-----------------------------SSSS---------S----SSSSSSSSS----------------
S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_384
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-----------------------------------------AGCAAATATATCGGCACTGAACC----------------
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>reverse_2579
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------------------CCCTCCAGGTAACTAGCCCT------------------------------------------
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