>input_sequence_72850
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---------------------------ATGGAGTCGTCGGGCGACACGGCGCCGTTGCACTCCTCACCGACCCCGACGTC
GCCGCCGGCAATGGCGACGGGGGCGGCGGTGGTGATGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGGTGCGTGG
ACCGCTGCGTGCTGGCGCCCTACTTCCCACCCACGGACCCCCACAAGTTCGCCACCGCGCACCGCGTCTTCGGCGCCAGC
AACATCATCAAGCTCCTGCAGGACCTGCCCGAGGAGCAGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGCGGC
GCGCGCGCGGGACCCCGTCTACGGCAGCGCCGGCGCCATCTGCCAGCTCCAGAGGCAGGTCGACGGCCTCAAGGCGCAGC
TCGCGCGCGCGCAGGCGGAGCTCGCGGCCGCCCGCGCCCACCACGCGCACCTCGTCGCGCTGCTCTGCGTCGAGGTGGCC
ACCGCCGCCGCCACGCCTCCGCAGGACGCCTACTGCACCGGCGGAGGCGGATCACAGACCCAGCTCGCCGCACCGCCTGG
TGTAGGCTCCGCGCACGCGGACGCGCTTTATGTCGTCGACGGCGGCGCGGCGGGCGGCGGCGGCATCATGCAGGCCGGGC
ACGTCGGCTGGGCCGACGAGCCGCTCTGGACATAA---------------------------------------------
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>chr1A_1_TraesCS1A01G062200
CTCCGATCCCCCACCACCCCGGTTTGCGCCCATATCACTGCCCGATCCTCCTTCTTGCCTCCCTACTTCTCCCGATTGCA
TCTCCTTCGCCACTTCCTTCGCCCCCTCCATTACAGCTGGAACCTCCATGTAAAACCTGGCCCCGAGCGGCGCCCTGTAG
ATCACCCCACGCGCACGAGGCTCGGGTAGGAAAACAGCGGCCGGTCGATGTGGACTCCGGCGGCGTCGTCGGAGAACAGG
GTAGACCCTAGAGAACCCTAGGGGAAAAGTGTCCTCCCCAACTCGCTATGTTGGGTTACTGCTGGTATGGTAGGATTTCT
TACTTGCTATGTGGTAAATAGGAATCTTAAAATTCTCTGAAAATATAGAACAAAATTAAAGTGCAAAGTTGTCAAAATTT
TCAAATCTGGTGCAATGTAATTTTTAGTTTGTTTGAGGTACTTTGTACTTCCGGTGAATTTTGTTACTCCTTTCCGCAAA
AGAAACACTACCAACTCGCGTTTTTTCCAAAATCTAGTGCAAACCGTCTACTCGTTATTAATAGGTGGTCCAAAATTAGA
ATTATCTACTTCCTCCGTCTCAAAATGGTATTATTTTTTAC-----ACAAAGGGAATATTTATTTAGAGATGTGCAAAGC
T-CAAAGATGTTCAATCTAATCCACCGAGAAATAGCAAATTACTTTGTCAAGAACTCTTAATACAGACCCTCCTAAAAAC
CACAACTACACCTAGCTTC-------------------------------------------------------------
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----------------------------------------------------------------------------TATT
CTTTCTCAGATTTTTTTTAAAGTTGTGTAAAATAAC----TATTTTTGAAGTGTAGAAAATGTATTTTCCACGAAAAAAA
ATAAAGGGCTCCGTGCAGCTCGATCGGCCATCAAATGCACTTTCCGCAACTACACCTAGCTTCTACTCCTAGCTTCCCCA
CACCGATCGACACCCTATATATACACCGCACCAACGGCGACAGAATTCCGCAACCAGCTAGCTCAGCTCAGCTCCAAGTG
AATCGAGCTCGCGCGAACCGATCGAACATGGAGTCGTCGGGCGACACGGCGCCGTTGCACTCCTCACCGACCCCGACGTC
GCCGCCGGCAATGGCGACGGGGGCGGCGGTGGTGATGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGGTGCGTGG
ACCGCTGCGTGCTGGCGCCCTACTTCCCACCCACGGACCCCCACAAGTTCGCCACCGCGCACCGCGTCTTCGGCGCCAGC
AACATCATCAAGCTCCTGCAGGACCTGCCCGAGGAGCAGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGCGGC
GCGCGCGCGGGACCCCGTCTACGGCAGCGCCGGCGCCATCTGCCAGCTCCAGAGGCAGGTCGACGGCCTCAAGGCGCAGC
TCGCGCGCGCGCAGGCGGAGCTCGCGGCCGCCCGCGCCCACCACGCGCACCTCGTCGCGCTGCTCTGCGTCGAGGTGGCC
ACCGCCGCCGCCACGCCTCCGCAGGACGCCTACTGCACCGGCGGAGGCGGATCACAGACCCAGCTCGCCGCACCGCCTGG
TGTAGGCTCCGCGCACGCGGACGCGCTTTATGTCGTCGACGGCGGCGCGGCGGGCGGCGGCGGCATCATGCAGGCCGGGC
ACGTCGGCTGGGCCGACGAGCCGCTCTGGACATAAGCGCGCGCAAGCTGGCGCGCACTGGATGATGCACTCGTCACTCAA
CTGGCCAACTG------CTACTACGTACGCATGATTCGTGTGT--AATTACTAGTGCTACATTTTACTTAACTGGGTTAA
CCAAAGGGTTGACCTG-------------CTTGATGAATTTGTTGGAGTTTCAAGATGGAGGAAGATCGAGTTTGTGTTG
TTTTGTTGCAAAAATACTACT----------AGTACATAGAATAAAAAATTCCGTCATGTTGAAGTTCCAACAAGTTCTG
AGAAGTCCTAATCGAGACGGAAACTTGTATCCTTGCCTTCTTCTGCAGTTGTGAAGAAGGATGTGGTTGGTTCTCTTGTG
TGTTGTTAGGTCAAATTGCATTTCTATCATGAACAAATGCATGTCATTTTCAAGAAGAGTATATTTAGTTCTCTACAACT
CC------ATGTAATAGTGATTGTCCATTTCACTATGAATTAGAGAAATTAACTTAGCGTGAATGGGAAATTCTTTGTTT
TGTCTAATATACGTCATGTGGAGTGCTTTTTATCTGGTGA-------ACTTGATATCAGCTTGATTTTGATACATTGTTC
TATGAGCACTTAATGAATCGGCATCCCTTTATTTGCTCCCAAAATAACCAGACAAATTAGACAATAACATGATTTTTTTT
CCCGTTCAAACAACATGATGGAAGTTTCTCAAGAAGCTAGCATTCATTGATTCAAATTAAAAAA--GTAAATTACAAGTA
CTATAGATGAAGAACTATGTTATTTCTCTTGACTTCTTCGTATGCAGAAAATGAGATGAGGAAGCTCGATGCATTTCTCT
ATGTTCTTTTCCTCAAACCGTCTTCACTATCCTTTTCCGAAAGAAAAAAACAACTTCATTATCAATCTGTCTTTGAG---
TTTGACTGAGAGAGTTGAACGAGCAAATGGTAATTGTTAGTATTAGTGTGAGGATGAGAGAAAGGAAGACATGACTTAGG
GCTTACGACATATAGGCAACAATTTGGCGGTATATAAGGTTGAA
>chr1B_311
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----------------------------------------------------------------------TAGGATTTCT
TACTTTCTATGTGGTAAATAGGAATCTTAAAATTCTCTGAAAATATAGAACAAAAATAAAGTGCAAAGTTGTCAAATTTC
TCAAATATGGTGCAATGTAATTTTTAGTATGTTTGAGGTACTTTGTACTTCCGATGAATTTTGTTACTCCTTTTCGCAAA
AGAAACACTACCAACTTGTGTTTTT-CCAAAATCTAGTGCAAACCGTCTACGCATTATTCATAGGTGGTCC-AAATTACA
ATTATCTACTCCCT-CGTCTCAAAATGGTATTGTGTTTTCTACACTACAGAGGGAATATTTATTTAGAG---TGCAAAGC
T-CAAAAATATTCAATCTAATCCACCAAGAAATAGCAAATCACTTTGTCAAGAACTCCTAATACAGACCCTCCTAAGAAC
CAAAACTACACCTAGCTTC-------------------------------------------------------------
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----------------------------------------------------------------------------TACT
CTTTCTCAGATTTTTTTTAA-GTTGTGTAATAAAAC----TTTTTTTGAAGTGTAGAAAATGTATTTTCCACAC---AAA
AAAAAGGGCTTCGTGCAGC----TCGGCCATCAAATGTACTTTCCGCAACTACACCTAGCTTCTACTCCTAGCTTTCCCA
CACG----GACACCCTATATATACACCACACCAACGGCGACAGAATTTCGCAACCAGCTAGCTCAGCTCAGCTCGAAGTG
AATCGAGCTCGCGCGAAC----CGAACATGGAGTCGTCGGGCGACACGGCGCCGTTGCACTCGTCACCGACCCCGACGTC
GCCGCCGGCAATGGCGACGGGGACGGCGGTGGTGATGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGGTGCGTGG
ACCGCTGCGTGCTGGCGCCCTACTTCCCGCCCACGGACCCCCACAAGTTCGCCACCGCGCACCGCGTCTTCGGCGCCAGC
AACATCATCAAGCTCCTGCAGGACCTGCCCGAGGAGCAGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGCGGC
GCGCGCGCGGGACCCCGTCTACGGCAGCGCCGGCGCAATCTGCCAGCTCCAGAGGCAGGTCGACGGCCTCAAGGCGCAGC
TCGCGCGCGCGCAGGCGGAGCTCGCCGCCGCCCGCGCCCACCACGCGCACCTCGTCGCGCTGCTCTGCGTCGAGGTGGCC
ACCGCCGCCGCCACGCCTCCGCAGGACGCCTACTGCACCGGCGTAGGCGGATCACAGTCCCAGCTCGCCGCACCGCCTGG
TGTAGGCTCCGCGCCCACGGACGCGCTCTACACCGTCGACGGCAGCGCGGCGGGCGGCGGCGGCATCATGCAGGCCGGGC
ACGTCGGCTGGGCCGACGAGCCTCTCTGGACATGAGCGCGCGCAAGCTGGCGCGCACTGGATGATGCACCAGTTACTCAG
CTGGCCAACTG---CTACTACTACGTACGCATGATTCGTGTGTGTAATTACTAGTACTACATTTTACTTAACTGGGTTAA
CCAAAGGGTTGACCTGCTTGATGAATTTGCTTGATGAATTTGTTGGAATTTCAAGATGGAGGAAGATCGAGTTTGTTTTG
TTTTGTTGCAAAAATAATACTGCTACGTACTAGCACATAGAATAAAAAATTCCGTCATGTTGAAGTTCCAACAAGTTATG
AGAAGTCCTAATCAAGACAGAAAGTTGTATCCTTGCCTTATTCTGCAGTTGTGAAGAAGGATGTGGTTGGTTCTCTTGTG
TGATGTTAGGTCAAATTGCATTTCTATCATGAACAAATGCACGTCATTTTCAAGAAGACCATCTTTAGTTCCTTACATCC
CCATGTAAATGTAACAGTGATTGTCCATTTCACTATGAATTAGAGAAAATCACTTAACGTGAATGTGAAATTCTTTGTTT
TGTCTAATATACATCATGTGGAGTGTTTTTTTTGTGTGTGATATACTACTTGATATCAGCTTGATTTTAACATATTATCC
TGCTAGCACTTAATGAATCGGCATCTCTTTATTTTCTCCCGAAACAACAAGACAAAGTAGACAATAATTTGCTTTTTTTT
TCA-TTCGAACAACATGATGGAAGTTTCTCAAGAAG-TAGCATTAGTTGATTCAAATTAAAAAAACGCA------AAGTA
CTATAGATGAAGAACTATGTTATTTCTCTTGACTTCTTCGTATGCAGAAAATGAGATGAGGAAGCTCGATGCATTTCTCT
ATGTTCTTTTCCTCAAACCGTCTTCATTATCCTTTTCG---AAAAAAAAACATCTTCATTATCAATCTGTCTTTGAA---
TTTGACCGAGAGAGCCTAACGAGCCAATGGTAATTGTTAGTGTTAGTGTGAGGATGAGAGAAAGGAAGACATGACTTAAA
GCTTACAACATA--------------------------------
>chr2D_318
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-----------------------------------------------------------------------------TCT
TACTTGCTACGAGGTAAGTAGGAATCTTAAAATTCTCTGAAAATATGGACCCAAAATAAGGTGCAAAATTGTCAAGTTTC
CCAAATGTAGTGCAACTCGT------------------------------------------------------------
--------------------TTTCC-CAAAAAGCTAGCGCAAATCGTCTACTCGTTATTAATAGGTTGTCC-AAATTAGA
ATTATCTC--------------------------------------------------TTCATTTGAAGATGCGCAAAAC
AACAAAAATGTTCAATCAACTCT--------------------------------------------CCATCCTAATAAC
AACTACTACACCGAGTGCATCGTTTGTTAGGACGGGGTCCATTGAGCCTGTTTTAAAAAAAAAAATCAAAAAATTATATG
TAAATGTTTCAAAAAAAAAATCTGCAACTATATATACATGTTCTTTAACTATATGTAAAGTTTCATCAAATAGATTATTG
TCATGCTACACAAAAAACACAAAAATCTGGCCCAAATTCAACAAGAAAAATCTCATTTTAATCTATGTATTTGTCTTTTT
CTTTTGTACATCACATATAAACATATATGTTCATGAAATCTCATACGTACATACTACACATATGTGCTTATGTGTATACT
CTATCTCAGATTTTTTTTAAAGTTGTGTTCAAAAAAAAGGTTTTTTTTAAGTGTAGAAAATGTATTTTCCACGAAATAAA
ATAAACGGCTCCGTGCAGCTCGATCGGCCATCAAACGCACTTTCCGCAACTACACCTAGCTTCTACTCCTAGCTTTCCCA
CACG----GACACCCTATATATACACCGCACCAACGGCGACAGAATTTCGCAACCAGCTAGCTCAGCTCAGCTCGAAGTG
AATCAAGCTCGCGCGAAC----CGAACATGGAGTCGTCGGGCGACACGGCGCCGTTGCACTCCTCACCGACCCCGACGTC
GCCGCCGGCAATGGCGACGGGGACGGCGGTGGTGATGAGCCCGTGCGCGGCGTGCAAGATCCTCCGCCGCCGGTGCGTGG
ACCGCTGCGTGCTGGCGCCCTACTTCCCGCCCACGGACCCCCACAAGTTCGCCACCGCGCACCGCGTCTTCGGCGCCAGC
AACATCATCAAGCTCCTGCAGGACCTGCCCGAGGAGCAGCGCGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGCCGC
GCGCGCGCGGGACCCCGTCTACGGCAGCGCCGGCGCCATCTGCCAGCTCCAGAGGCAGGTCGACGGCCTCAAGGCGCAGC
TCGCGCGCGCGCAGGCGGAGCTCGCCGCCGCCCGCGCCCACCACGCGCACCTCGTCGCGCTGCTCTGCGTCGAGGTGGCC
ACCGCCGCCGCCGCGCCTCCGCAGGACGCCTACTGTGCTGCCGGAGGCGGATCGCAGTCCCAGCTCGCCGCACCCCCTGG
TGTCGGCTCCACGCCCGCGGACGCGCTCTACGTCGTCGACGGCAGCGCGGTGGGCGGCGGCGGCATCATGCAGGCCGGGC
ACGTCGGCTGGGCCGACGAGCCGCTCTGGACATGAGCGCGCGCAAGCTGGCGCGCACTGGATGCAT---TCGTCACTCAA
CTGGCCAACTGCTACTACTACTACGTACGCATGATTCGTGGGTGTAATTACTAGTACTACATTTTACTTAACTGGGTTAA
CCAAAGGGTTGACC-------------TGCTTGATGAATTTGTTGGAGTTTCAAGATGGAGGAAGATCGAGTTTGTTTTG
TTTTGCTGCAAAAATAATACT----------AGCACATAGAATAAAAAATTCCGTCATGTTGAAGTTCCAACAAGTTCTG
AGAAGTCCTAATCGAGACAGAAAGTTGTATCCTTGCCTTCTTCTGCAGTTGTGAAGAAGGATGTGGTTGGTTCTCTTGTG
TGATGTTAGGTCAAATTGCATTTCTATCATGAACAAATGCATGTCATTTTCAAGAAGAGTATCTTTAGTTCCTTACATCC
CCTTGTAAATGTAACATATTGTCCTACGAGCACTTAACAAATGCATGTCATTTTCAAGAAGACTATCTTTTACTTTACAT
CCCCATGTCATTTTTATGTGATA-----------------------TATTTGATATCAGCTTGATTTTAACATATTGTCC
TACGAGCACTTAATGAATTGGCATCTCTTTATTTGCTCCCGAAATAACCAGATAAATTAGACAATAAAAGGATTTTTTTT
---GTTCAAACAACATGATGGAAGTTTCTCA-GAAG-TAGCATTAGTTGATTGAAATAAGAAAACCGTAAATTACAAGTA
CTATAGATGAAGAAAAATGTTATT-CTTTTGACTTCTTCCTATGCAGAAAATGAGATGAGGAAGCTCGATGCATTTCTCT
ATGTTCTTTTCCTCAAACCGTCTTCATTATCCTTTTCA-AAAAAAAAAAACATCTTCATTATCAATCTGTCTTCGAGTCG
TTTGACCGAGAGAGTTGAACGAGCCAATGGTAATTGTTAGTTTTAGTGTGAGGATGAGAGAAAGGAAGACATGATTTAGG
GCTTACGACATT--GGCAACAATTTGGCGGTATATAAGGTTGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------------------S--------------------S--S
------S---------------------S------------------------S-------------------S------
----------------S-S------S---------------------------------------------S--------
----------S---S-----------------S-S----SS--------S------------------------------
------S-------------------S-------------S----------------S------------------S---
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------------------------------------------------------------------------------S-
--------------------------------S--------S----------------------------------S---
---------------------------------------------------------------------------S----
---SSSSS---------------------------------------S--------------------------S-----
------------------SSSS----------------------------------------------------------
----------------------S---------------------------------------------------------
----------------------------S---------------------------------------------------
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-------------------------S------------------------------------------------------
---------------------------------------------------------S----------------------
--------------S------------S--S------------S------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------------S------------------------
----------------------------------------------------------------------------S---
----------------S----------------S----------------------------------------------
------------------S----S--------------------------------------------------------
--S-----------------------------------------------------------S--------SS----S-S
--------------S---------------------------------S-S-----S--------S--------------
------------S------------S-----S-S--SSSS----------------------------S-S-S-----S-
--S----------------------S--------------S--------------------------S------------
S-S---------------------------------S-------SS----------------------------------
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--------------------------S----------SS---S---------S---------------------------
------S-----------------S----------------S--------------------------------------
------------SS------------------------------
>forward_147
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-----------------------------------------------ATGTAAAACCTGGCCCCGAG-------------
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>reverse_1868
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---------------------------TTATGTCGTCGACGGCGG-----------------------------------
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>forward_290
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------------------------------GTCCTCCCCAACTCGCTATG------------------------------
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>reverse_2973
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------------TAGGCAACAATTTGGCGGTA------------
