>input_sequence_72847
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--------------------------------------------------------------GTATATATGCAA-----G
CAAGTGTAGTCGGTATTGCTTACAACCACTAGTGCAGTGCACAA-CTCAAGAAACTACACCAACAAACCGGACAAGGCTA
GAAAGAATAACATGGCGTCCAAGTCTAGCATCTCCCCCCTCCTCTTGGCCACCGTCCTGGTCTCCGTCTTCGCCGCCGCC
ACAGCCACAGGTCCATATTGCTACGCCGGGATGGGCCTTCCGATCAACCCGCTTGAAGGCTGCCGGGAGTATGTCGCACA
GCAAACCTGTGGCATCAGCATATCCGGGTCGGCGGTGTCCACCGAGCCGGGGAACACCCCAAGGGATCGGTGCTGCAAGG
AGCTTTACGACGCCTCGCAGCATTGCCGGTGCGAGGCAGTGCGCTACTTCATAGGGCGGAGGTCTGATCCCAATTCCAGC
GTGCTCAAGGACCTCCCCGGATGCCCCAGGGAGCCCCAGAGGGACTTCGCCAAGGTGCTCGTTACGCCGGGGCACTGCAA
CGTGATGACCGTTCACAACGCCCCATACTGCCTCGGTTTGGACATATAAAGATAGATAGATCCGTCGCCCATGAATGAAT
AAGCATGCTCCGTCCGTGGATGTGTGGCATGCATATATGCATATGTGAGCTCCCGTTGCTCAACATTTGCTTTACTA---
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>chr7D_1_TraesCS7D01G168000
ACCACTAGGCTATGCCTTAGTCTGCATCAGTACATAAGTTAGCGGCTCTATAGTTCACATTGTGAATTTTTCATTACAAA
AACTTTTCAAACTATCCGGAAGAAAAATCT-------TACAAGACGGCAAGATTCAATATATTGGGCACAGTGACA----
TGATGATGGCACTGACTCTGTTTTTGGGGAAATAACATCAAACATCAAACGAAATGGGCTAGGCCTTTGTCGTATTATTG
GGCTCAGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTATGCATACACTTGACTTGCGAATAACTTTGAAAATCAATGCT
TTGCGAAGTTACTCATACG-CATAGCCGATTATCACATGATCTCACATGGCGCAAAAACAAAATCTGTTGTTAGTTTTAA
CAAGGTTTGCACGTATAAACTAGCTAAAGGCTCCACTTTAAGCACCGATGACAACTTGACAAGAGAAGAAAAAGATGCCA
CATGGTTTGAAA-AAAAAAGGATGCCACATCAACCATCACAGGAAAAGCTAGGCCCGATCAGCTACGAATATCTCAATGC
TTCCACACAAAGCCAATTACATTTCCCTCCAAATTCTGTTCCAACAAACTAATTAAGTGCACTCTAGCTCACCATAATCG
TCATATAGCACAACAGATTTAGTTAATAGCTGGAGCTTTCTTGC---------TTTTATCAGGTATATATGCAA-----G
CAAGTGTAGTCGGTATTGCTTACAACCACTAGTGCAGTGCACAA-CTCAAGAAACTACACCAACAAACCGGACAAGGCTA
GAAAGAATAACATGGCGTCCAAGTCTAGCATCTCCCCCCTCCTCTTGGCCACCGTCCTGGTCTCCGTCTTCGCCGCCGCC
ACAGCCACAGGTCCATATTGCTACGCCGGGATGGGCCTTCCGATCAACCCGCTTGAAGGCTGCCGGGAGTATGTCGCACA
GCAAACCTGTGGCATCAGCATATCCGGGTCGGCGGTGTCCACCGAGCCGGGGAACACCCCAAGGGATCGGTGCTGCAAGG
AGCTTTACGACGCCTCGCAGCATTGCCGGTGCGAGGCAGTGCGCTACTTCATAGGGCGGAGGTCTGATCCCAATTCCAGC
GTGCTCAAGGACCTCCCCGGATGCCCCAGGGAGCCCCAGAGGGACTTCGCCAAGGTGCTCGTTACGCCGGGGCACTGCAA
CGTGATGACCGTTCACAACGCCCCATACTGCCTCGGTTTGGACATATAAAGATAGATAGATCCGTCGCCCATGAATGAAT
AAGCATGCTCCGTCCGTGGATGTGTGGCATGCATATATGCATATGTGAGCTCCCGTTGCTCAACATTTGCTTTACTAATA
AAGAGAATCATTTTGTGGTTCTTAAATTTCAACTCAATCTTTTGTTCATATGTCTGGTGGTTTCATAGCCTTGTTGTTAT
CTTAGTCATTGCTTGTGATCCTCGGTAGTGTTTCTCGATCGATATATTCGTGGATTTGATTTGTAATCACAAATAGTGCA
TGTACTTTGACGTGGCATGACGTGTGAGAAAAACTATGATGTGGCAGAGAAAACACACACCATGTTATTAACCGATCTAT
GCAGTATACAAACAATGAAAATACAACAATTTATTAACTAGAATAAAAAATACAAATAGATCTACATCTTTTTGGATATA
ATTCTTTACTAAAATGAGCCGCTCAAGTTCTTATTTGTAAGAGAGAAAAGGCTTGGAAGTTCCACACCCACATAAAAGAA
GTGAAGTCCTCGTATATTTTAGTTCCTTGTTACTCAATAAAAAATCTCACGACCATTCGATTGTCTATTTTTCTTAGATT
AAGCAACTAGTCTATAAGTGATTATTCTTGGATGGAGTAGCAAGAAATACAATGTATTTTTGCGAGAAGCTGGAAATACA
ATGTTAGTGTACCATTTCTTGGAACTCTTGACTATAGCTATTGCATATTAAGGCACAATATTATCGAAAATATATCAGAA
AACCTCACAAAAATGAGACCATATGTTTTGTAAATCTGATGGGCCCTTTTTAGCATACTACCCTAACCAATAAGTCATCG
TAAGCATCACCACCGATATTGTGAAAATTTTCATTACATTTGTGCTGAAATACATTTGTTATCTTATTTTAGAAGAATGC
TGGTATAGGAAAGAATGGCCAAAGTTTTATCATAAAAGACTATGTCCATGTCTCAAAATTGTATTTTTCCTGCAAAAAAA
ACAAAATTACGTATTTTAAAATGTAGTGATGTGATAGTCCTACTACCATATTCCTATATAATATATGTCGTATATGGGTT
GTACAAGCCTAGTATATGTAAGTCCAATGGGACCCAC
>chr7A_26
-------------------------ATCAGTACATAAGTTAGCAGCTTTATAGTTCACATTGTGAATTTTTCATTACAAA
AACTTTTCAAACTATCCGGAAGAAAAATCTTATGGGGTACAAGACGGCAAGGTTCAATATAATGGGCACAGTGACA----
TGATGATGGCACTAACTCTGTTTTGGGGGAAATA--ATCAAACATCAAACGAAATGGGCTAGGCCTTTGTCGTATTATTG
GGCTCAGACCAAAACGGGTGTATGGAGCCATTGTTTCACAAAATAATTCCCTCAAAAAAGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN----------------------------------------------------------------
-------CTAT-----------------------CTGTATGCATACACTTGACTTGCGAATAACTTTGAAAATCAATGCT
TTGCGAAGTTACTCATACGCCATAGCCGATTATCACATGATCTCACATGGCGCAAAAACA--------------------
--------------------TACCTAAAAGTTTCACTTAAAGCACCGATGACAAATTGACAAGAGAAGGAAATGATGCCA
CATGGTTCGAAAGAAAAAAGGATGCCACATCAACCATCACAGGAAAAGCTAGGCCCGATCACCTACGAATATCTCAATGC
TTCCACACAAAACCAGTTACATTTGCCTCCAAATTCTGCTCCAAGAAACTAATTAAGTGCACTCTAGCTGACTATACTCG
TCATATAGCACAACAGATTTAGTTAATAGCTGGCAGCTGTCT-C---------TTTTCTCTGGTATATATACAAGCAATG
CAAGTGTGGCGGGTATTGCTTAC---------------------------------------------------------
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>chr7B_28
---------------------------CAGTACATAAGTTAGCGGCTCTATAGTTCACATTGTGAATTTTTCATTACAAA
AACTTTTCAAACTATCTGGAAGAAAAATGTTATGGAGTACAAGATGGCAAGGTTCAATATATTAGGCACAGTGACGTGAT
TGATGATGGCACTGACTCTGCTTTTGGGGAAATAACATCGAACATCAAACGAAATGGGCTAGGCCTTTGTCGTATTATTG
GGCTCAGACCAAAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAG
TTGTAGCCTAT-----------------------CTGTATGCATACACTTGACTTGCGAATAAATTTGAAAATCAATGCT
TTGCGAAGTTACTCACACGCATAGTT-GATTATCACATGATCTCACATGGCGCAAAAACAAACTCTGTTGTTAGTTTTAA
CAAGGTTTGCACGTATAAACTAGCTAAAAGTTTCGCTTTAAGCACCGATGACAACTTGACAAGAGAAGAAAAGGATGCCA
CATGGTTCGAAAGAAAAAAGGATGCCACATCAACCATGACAAGAAAAGCTAGGCTCGATCAGCTACGAATATCTCAATGC
TTCCACACAAAGCCAGTTACATTTCCCTCCAAATTCTGCTCCAACAAACTAATTAAGTGCACTCTAGCTCACCATATTCG
TCATATAGCACAACAGATTTAGTTAATAGCTGGCAGCTCCTCCTCTCTTACATTTCTCTCTGGTATATATGCAG-----G
CAAGTGTGTCCGGTATTGCTTACAGCCACCAGCACAGTGCACAACCTCAAGAAACTACACCAACAAACCGGACCAAGCTA
GAAAGAATAATATGGCGTCCAAGTCTAGCATCACCCACCTCCTCTTGGCCGCCGTCCTGGTCTCCGTCTTCGCCGCCGCC
GCAGCCACAGGCCCGTATTGCTACCCGGGGATGGGTCTTCCGAGCAACCCGCTTGAAGGCTGCCGGGAGTATGTCGCACA
GCAAACTTGTGGCGTCGGCATCGTCGGGTCGCCGGTATCCACCGAGCCGGGGAACACCCCGAGGGATCGGTGCTGCAAGG
AGCTTTACGACGCCTCGCAGCATTGCCGGTGCGAGGCGGTGCGCTACTTCATAGGGCGGACGTCTGATCCCAATTCCGGC
GTGCTCAAGGACCTTCCCGGATGCCCCAGGGAGCCCCAGAGGGACTTCGCCAAGGTGCTCGTTACGCCGGGGCACTGCAA
CGTGATGACCGTTCACAACACCCCATACTGCCTCGGTTTGGACATATAAAGATGGATAGATCCGTCTCTCATGAATGAAT
AAGCATGTTCCATCCATGGATGTGTGGCATGCATATATATATGAACAAG---------------------------AATA
AAGGGAATCATTTTGTGATTCTTAAATTTCAACTCAATCTTTTGTTCATATGTCTCGAGGTTTAATAGCCTTGTGAGTAT
CTTATTCATTGCTTGTGACCCTCAGAAGCGTTCTTCGATCCATA------------------------------------
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--------------------------------------------------------------ATATGTCGT---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
---------------------------------------------------S----------------------------
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-----------SSSSSS---------------------------------------------------------------
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--------------------------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
--------------------------------------------------------------S-----------------
----------------------------S-S-S---------------------------------------S-------
-------S------------------------------------------------------------------------
---------------S----------------------S-------------------------------------S---
---------------------------------SSSS-S---S--------------S--S-------------------
-------S-S--------------S----S--SS---------------------------------------S-S----
----------S---------------------S---S-------------S-----------------------------
S----------S--S---------S-S--------S-------S------------------------------------
------S------S--S----SSS-------S----S-----------------------S-------------------
-------------------------------------S----------------------S----------------S--
--------------S-----------------------------------------------------------------
-------------------S---------------------------------S------------S-S-----------
-------S---S---S----------------------SS--SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSS----
---S-------------S-------------------------------------S-S-----S----------SSS---
----S-------------S----S-S--S---SS------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_896
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----------------------------------------------------------------------------ATGC
TTCCACACAAAGCCAA----------------------------------------------------------------
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>reverse_2397
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----------------------------------------------------------------------------ATCG
TAAGCATCACCACCGA----------------------------------------------------------------
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