>input_sequence_72840
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------------------------ACACATAGGGCCGGAGATAGAAGAATAGTTAT---GGCTTCATCGGCGGTGAGCCA
CAGCCACGGCGGGCAGCACCAGCA---GCACCTGCCGGCGGCGGCAGGGAGCATGATGGCGCGGGTGGACCGGCTGGACC
TGGTGGTGGGGTACCTGGAGGAGATGCGCCACCACAGCGGCGGCAGCGGCAGGTCGTCCACCACCGCGACCAGCACGCTG
TCATCGTCATCCCCGACCACGCCTAGGTCTTCCCGGCCTCATGGGTGCCGGCCGGCGGAGGAGCTGCTGCGGGAGGCCAA
GGCCAAGGGGAGCCTGGTGGAGCGCATAGCGTTCCTGGAGGACCGGGTGCTCCGGATGGAGGAGGAGCGCATGGATCTGT
CGTCC---AGCATGGAT---ACGGCGGAGCAGACCACGCCGACCTCGTCGGGGAGGAGGACGATGAGGATGATGATGAGC
GGCAGCGGCGGGGCCGGGGATGAGCATGGGAGTGGCGGGAGCGGGAAGAAAGGGAAGAAGGGGCTCAAGAGCTTGGTCAA
GTCATGCGTCCGAGCAGGCGCCAAGCTCAAGACCAAGGAATAGTCTAGTCTTTCTTTTGTTTCTTTATTATTAGTCGTGT
GTGTACGTGCATATGTTCACGTGTACGTACACCATGTACAGTAAA-----------------------------------
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>chr5D_1_TraesCS5D01G001800
TGATCTCCCACGCGCCGCTGTAGCCCTTCTTCAGGGGCAGCCAGTCCTCTTTCTGCTTCAGCTCCACCTCCTTCATGCTG
TCGCCGGCCTTGTCGTACTTGATCTGCAGCGCCAGATGCGTCTTGTCGGACCCCTTCTCCACCGTGAAGCTCACCGGCGG
CGGCGCGCACCACGCCACGGCCACCAGGGCGGCCATCACCGCCGCCACCAGCATCCTGCTCGATGAAGCCATCTCCGGTC
GGTTGGTTGGTTGATTGATTCTTGTGTGTGGGTGTG----AGTGTGTGCGGTTCTGCTGCTGTGGGATTGTGAGCTTGTG
------------GTGTGGTACCATATTTATGCGCGGACGCGCGGCGCTCCGGCGATGTCGCTCGCGGCCCTCGGTGACGG
AGAGCCGCGTATGCATGAACGGACCAGCTCGGTCTCGATCAT-ATGGCCGGGTGGCCGCATAAACCACCGACATCGCCGG
ACCGTTGGCCGGTCGCATGCCTGTCATGCCATGTCTAATTATACACACAT-AGCAGCAACAAACATAAAATAATAAGCTT
-CCTCGGACG----ATCGAGATGGCTTCGTCCTCGGCGGTGGAGCTTTTCACCTCCGGCGAGAATTTTATTTTGGCCGTG
TCCTC----GTGCTAG------------CGAGTAGAGGTGTCTTCCAGACGGAGTAGATGGGGGCTCGTGGCCTGGCTAC
ACGTGCACGTGGCGCGAGGCTGTTGGCTGCGAGATGGAACGTGGAGCAGTATCTCGTTGGCGGCTGCAAAGCAGGACACG
TACGCGAGCACGGAGAGCCGTCCACCTCACGCATGCATGCACCGCCGTTGCATGCATCCATGCGCCACGTTGCCACCTCC
GTGACAGACACGTGCAC--------------CTCCATTCCATGTCCATCCGATCGGCCATGGCGGCTCCATCTGCTACTT
ATTTATACCTGCTCCGTGCATGTGTCACATGATCGATAGCAGAGCAATTCTC-------TTGCAACTTGATAAGATCGAG
ATACTTCCAGACACACGCG----CACACATAGGGCCGGAGATAGAAGAATAGTTAT---GGCTTCATCGGCGGTGAGCCA
CAGCCACGGCGGGCAGCACCAGCA---GCACCTGCCGGCGGCGGCAGGGAGCATGATGGCGCGGGTGGACCGGCTGGACC
TGGTGGTGGGGTACCTGGAGGAGATGCGCCACCACAGCGGCGGCAGCGGCAGGTCGTCCACCACCGCGACCAGCACGCTG
TCATCGTCATCCCCGACCACGCCTAGGTCTTCCCGGCCTCATGGGTGCCGGCCGGCGGAGGAGCTGCTGCGGGAGGCCAA
GGCCAAGGGGAGCCTGGTGGAGCGCATAGCGTTCCTGGAGGACCGGGTGCTCCGGATGGAGGAGGAGCGCATGGATCTGT
CGTCC---AGCATGGAT---ACGGCGGAGCAGACCACGCCGACCTCGTCGGGGAGGAGGACGATGAGGATGATGATGAGC
GGCAGCGGCGGGGCCGGGGATGAGCATGGGAGTGGCGGGAGCGGGAAGAAAGGGAAGAAGGGGCTCAAGAGCTTGGTCAA
GTCATGCGTCCGAGCAGGCGCCAAGCTCAAGACCAAGGAATAGTCTAGTCTTTCTTTTGTTTCTTTATTATTAGTCGTGT
GTGTACGTGCATATGTTCACGTGTACGTACACCATGTACAGTAAACGTATGTGTAAATGTGAATGTACACGTTGTAATAA
CGAAAAAGTAGTAATACATGCTTGCTGTATTATCTTCGCCGACAAGAAACTCAATTTGGGTAATGCTAATGTTCCCTTCT
GGGTGAGTTTGGGTGAGTTCTCTTCGTAGGCGGAGATTGAAACTCAATTTGGGTGATGTTAATGTTTCCTTTTGGGTGAG
TGATCTTCGTAGGTGAAGATTGTTTCTGATGCGCTGGTTTTATGGGATTGACTTTTTGAACCTCTATTTGTTTAGAGGGG
CGATGCCGGCGGCGCGTGTTTGTGGTCTTCGCTAGGTGCTCTATAAAATTTTACCTTTAGATTGACAGTATTTTTACTTC
TAGACTTGACAGTATAGAAATAGGAGAATGTGTAGATTTTACTTCTAGACTTGGACAGTATTTTTACTTCTAGACTCGAC
AGTATAGAAATCGATCAGAAGTTTTCACGAAAAAAAAATTCCCAGTCAAGGAATAGATCAAAAAAGAATGTTCCCATTTG
ATGAATAGATCAAAAAATTCTCAAAAGAATGTTTCTTTTGAATGAGTAACGTTTATATATACCACAACCTTTTCATGTAT
TTATGGGTCGGAGCGGGAAGAAGGGGCGCCAAGCTCAAGACCAAGGAATAGTCAGTCTCTAGTCTCTAGTCGTGTGTGTA
CGTGCATATGTTCACGTGTAAGTCCACATGGTACAGTTCACGTATCCGTAAAAACATGATCTGAAGTTACACTTTCG-TA
TAAAAAGTAGTAGTAGTATATGAAGAACTTCTTTTCACAAAGCAACGAGCCGTCTC-GTCGATTTCCGTCATGGCTCAAG
GAACTTAATTTTAGTGAATGTTAATGTTCGCTTGACCACATGGCTTGTAGGTCGCAGGATCTGCGGCGGCCAGATATGGG
GCTTGAAGGCGGAGGGTGCACTGGTTGTCGGTCGGGTCTCGTGGGCCAGATCCGGATGAAAAATCTTGTCTTTAGCCAGT
GGCTGGA
>chr5B_1
TGATCTCCCACGCGCCGCTGTAGCCCTTCTTCAGGGGCAGCCAGTCCTCGTTCTGCTTCAGCTCCACCTCCTTCATGCTG
TCGCCGACCTTGTCGTACTTGATCTGCAGCACCAGATGCTTCGCGTCGGACCCCTTCTCCACCGTGATGCTCACCGGCGG
CGGTGCGCTCCACGCAACGGCCACTAGGGCGGCCACCACCACAACAACCAGCATCCTGCTCGATGAAGCCATCGCCGGTC
GGTTG------------ATTCTTGTGTGTGTGTGTGTGTGAGTGTGTGTGGTTCTGCTGCTGTGGGATTGTGAGCTTGTG
ATGGGTTGTGTGGTGTGGCACCATATTTATGCGCGGACGCGCGGCGCTCCGGCCATGTCGCTCGCGGCCCTCGGTGACGG
AGAGCCGCGCACGCATGAACGGACCAGCTCTGTCTTCTCGGTCATGGCCGGTTGGCCGCATAAACCACCGACATCGCCGG
AGCGTTGGCCGGTCGCATGCCTG-----C-----CTAATTATACACATAGCAGCAGCAACAAACATAAAATAATGAGCTT
TCCTCGGACGGACGATCGAGATGGCTTCGCTTCGTCGTCGATGCGAGAAA----------------TTCTTTTGGTCGTG
CCCTAGCTAGTGCTAG------------CGAGTAGAGGTGTCTTCCAGACGGCGTAGATGGGGGCTCGTTGCCTGGCCAC
ACGTGCACGTGGCGCGCGGCTGTTGGTTGCGAGAAGCCACGTGGTGCAGTATTTCGTTCGCGGTTGCAAAGCAGGACACG
TACGCGAGCACGGAGAGCCGTCCACCTCACGCACGCATGCACCGCCTTTGCAT--------GCGCCACGTCGAAGCCTCC
GTGACAGACACGTGCAGCTAGCTAGCTGCCTCTCCATTCCATGTCC-----------------GGCTCCATCTGCTACTT
ATTTATACCTGCTCCATGCATGTGTCACATGATCACTCC------------C-------TTGCAACTTGATAAGATCGAG
ATAATTCCAGACACGCGCGCACACACACATAGGGCAGGAGATAGAAGAACAGTTATTATGGCTTCATCGGCGGTGAGCCA
CAGCCACGGCGGGCAGCAC------CAGCACCAGCTGCCGGCGTCTGGGAGCATGATGGCGCGGGTGGACAGGCTGGACC
TGGTGGTGGGGTACCTGGAGGAGCTGCGCCACCACAGCGGCGGCAGCGGCAGGTCGTCCACCACCGCGACCAGCACCCTG
TCATCGTCGTCTCCGACCACGCCTCGGTCGTCTCGGCCTCACGGGTGCCGGCCGGCGGAGGAGCTGCTGCGGGAGGCCAA
GGCCAAGGGCAGCCTGGTGGAGCGCATCGCGTTCCTGGAGGACCGCGTGCTCCGGATGGAGGAGGAGCGCATGGAGCTGT
CGTCGTCGAGCATGCTTGACACGGCGGATCAGACCACGCCGACCTCGTCGGGGAGGAGGACGATGAGGATGATGATGAAC
GGCGGCGGCGGGGCTGGGGATGAGCATGGGAGTGGTGGGAGCGGGAGGAAGGGGAAGAAGGGGCTCAAGAGCTTGGTCAA
GTCGTGCGTCCGAGCAGGCGCCAAGCTCAAGACCAAGGAATAGTCG------------GTGTCTGTAGTCCTAGTCGTGT
GTGTACGTGCACACG----------------TCAT---------------------------------------------
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------------------------------GTACACTTCAGGTATCTGTAAAAACGTGTTGTGAATGTATACTTCGTATA
AAAGTAGTAATATTAATATATGGAGAACTTA-TTTCACAAAACGAGGAGTCATCTCAGTCGATTTCCACTATGGGTCAAG
AAGCTTAATTTCAGTGAATATTAATGTTCGC-------------------------------------------------
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>chr5A_1
TGATCTCCCACGCGCCGCTGTAGCCCTTCTTCAGGGGCAGCCAGTCCTCCTTCTGCTTCAGCTCCACCTCCTTCATGCTG
TCGCCGGCCTTGTCGTACTTGATCTGCAGCGCCAGATGCGTCTTGTCGGACCCCTTCTCCACCGTGAAGCTCACCGGCGG
CGGCGCGCACCACGCCACGGCCACCAGGGCGGCCACCGCCGCCGCCACCAGCATCCTGCTCGATGAAGCCATCTCCCGTC
GGTTGGTTGGTTGATTGATTCTT------------------GTGTGTGTGGTTCTGCTGCTGTGGGATTGTGAGCTTGTG
ATGGCTTGTGTGGTGTGGTACCATATTTATGCGCGGACGCGCGGCGCTCCGGCGATGTCGCTCGCGGCCCTCAGTGACGG
AGAGCCGCGTATGCATGAACGGACCAGCTCAGCCTTCTCGATCATGGCCGGTTGGCCGCATAAACCACCGACATCGCCGG
AGCGTTGGCCGGTCGCATGCCTG-----CCATGTCTAATTATACACATAT-AGCAGCAACAAACATAAAATAATGAGCTT
-CCTCGGACGGACGATCGAGATGGCCG-GCTTCGTCGTCGATGTGAGAAA----------------TTCTTTTGGTCGTG
TACAAACATAAAATAATTCTTTCGTCGTCGAGTAGAGGCGTCTTCCAGACGGAGTAGATGGGGGCTCGTGGCCTGGCTAC
ACGTGCACGTGGCGCGTGGCTGTTGGTTGCGAGAAGGAACGTGGAGTAGCATTTCGTTGGCGGCTGCGAAGCAGGACACG
TACGCGAGCAC--------------CTCAGGCATGCACGCACCGCCGTTGCATGCATACATGCGCCACGTCGCCACCTCC
GTGACAGACACGTGCAGCTAGCTAGCTGCCTCTCCATTCCATGTCCATCCGATCGGCCATGGCGGC----TCTGCTACTT
ATTTATACCTGCTCCATGCATGTGTCACATGATCGATAGCAGATCAATTCTCTTCCAAGTTCCAACTTGATAAGATCGAG
ATACTTCCAGACACGCGCACGCACACACATAGGGCCGGAGACAGAAGAACAGTTAT---GGCTTCATCGGCGGTGAGCCA
CAGCCACGGCGGGCAGCACCAGCACCAGCACCAGCTGCCGGCGGCTGGGAGCATGATGGCGCGGGTGGACCGGCTGGACC
TGGTGGTGGGGTACTTGGAGGAGCTGCGCCACA------GCGGCAGCGGCAGGTCTTCCACCACCGCCACAAGCACCTTG
TCATCGTCGTCCCCGACCACGCCTCGGGCTCGA---CCTCACGGGTGCCGGTCGGCGGAGGAGCTGCTGCGGGAGACCAA
GGCCAAGGGGAGCCTGGTCGAGCGCATCGCGTTCCTGGAGGACCGGGTGCTCCGGATGGAGGAGGAGCGCATGGAGAT--
-GTCGTCGAGCATGGAG---ACGGCGGA------------------GTCGGCGAGGAGGACGATGAGGATGATGATGAAC
GGCAGCGGCGGGGCTGGGGCTGAACCGGGGAGTCCCGGGAGCGGGAAGAAAGGGAAGAAGGGGCTCAAGAGTTTGGTCAA
GTCGTGCGTCCGAGCAGGCGCCAAGCTCAAGACCAAGGAATAGTCGAGTCTATAC----------TAGTCCTAGTCGTGT
GTGTACGTGCGTGTGTTCACGTGTATGTACATCAT---------------------------------------------
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------------------------------GTACAGTTCACGTATCTGTAAAAACATGTTGTGAAATCTACA--------
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>SNPs
-------------------------------------------------S------------------------------
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-----------------------------------S--------------------------------------------
------------------------------S-----------------S-------------------------------
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------------------------------S----SSSSS-----------S----------------------------
-S---------------------SSSSS-------------------S--------------------------S-----
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S----
----S---------------------------------------------------------------------------
----------------S---------S-------S-----------------S---------------------------
---------------------------------------------------------S------------S---------
----------------S---------------------------------------------------------------
---------------S---------------------------S------------------------------------
--------------S----------------------------------S------------------------------
--------------------------------S--S-S-------S----------------------------------
-----------------------S----------------------------------------------------S---
--------S---------------S-------S--------S--------------------------------------
---------------------------S-----------------------------------------------S----
----S-----------------------S-------------------------------------------------S-
--------------S-----------------------------------------------------------------
---S-----------------------------------------S-----S-SSSSS--S---S--S-SS---------
-------------------------S-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------S-S----S---S----SSS---
S--SS----S--S--S------S-------SS---------S-S-S---S-S---------------SSS----S-----
S-S--------S-------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_590
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----------GACGATCGAGATGGCTTCGT--------------------------------------------------
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>reverse_2388
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-------------------------------------------------------------------AGTCGTGTGTGTA
CGTGCAT-------------------------------------------------------------------------
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