>input_sequence_72838
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----------------------------------------ATGCCGCACCGCGCGCGGCCGATGACGGGGCTGCTGGTGT
TCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACCCCTACTGGGACCGC
AGGGTA-----CCCCCACCCTTTCCCCGCTCATTCTTCTCCGACTGTATGCGGAAATGCCTGTGATCGTCGTTGGTTGAG
ACATACCCACTGGAAACTTCACTCGACGTGCAATTCCTAGCCAGAACGAGTGCCTGTTTGGTTGGATTCTTGTTCTAGAT
TTGCTTATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCTAGGAGCGGTTCGATAGATGAGTTGTTTGGACTGGATG
TGCTGTTTGACCAAAATGATTACA-CTTGAGGAGT-CCTTGCCCAGTTGCATTGCGCCTCTTCCAGCCGTTCTGGAAAAT
TTTCCAGGGAAACTGCATCTGC-----ACATGTTCCATGATAGACCCATCCTTGCTTCCCAACAACTGGCAATGAGAGTA
CTAGGATCTTGATTTATTGGATACAATTTTGAATTTTGTGTGTGTGTAATGTGTAATTT-TTGTCCAAATTTGCAGAGAG
AACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAA------------------
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>chr4B_1_TraesCS4B01G130200
TAACTTTTGTAAATCCCCTCAGTTTGGCGAAGATGACACCGTCTCGCGCTGCCATAGCCTCCGCAATGAGTGGATCTGTA
ACACTCGGATATGGCTTGCGCCATGCGCCTTTGAAAGAACTGGAGGAACGAGCTACACCACCCCCTCCACCCTTGCCGTT
CTCTCTCCTGGTAGCTGCATCAGTATTAATCTTGACATGCTCAAGGTCCGGGGGTCGCCAACCATGTCTGGGTAACACCA
TTGCATGGCGTTGTGGTATATCCAGGAGCGCTAGGGCCTCTCTGGTCCGATGCACTGGAGTAGCGAGATTAAGGCTATCC
TCACCATGAGTCAGTTTGTTTCTCGAATGCCAAACTGACCACATAACCGAGACCATAGTCGCCCGCTCCATGTTCGTGAA
TCTGTCATCACAGATAATATCCTTCGTCCATATAGAAGGGTGCAACCCTGGCATGTGGAAATCAAAGAGTCGCCTGTGAG
GTAAGTATATACATGAGCGACTTCGAATGTACTGTATTTTTTTTCTTTTTGTCGGAGGTATTATCAGGCTGGTCAATGAT
CATATGGTTTGGTTTGGTGCAAACCAACCTGTGGTTGGGATGGTCATGTGGACAGTGGTATCCCCAGCCTATCAGGGTTT
AAGTCTTTGTGCTTGCATTTATTTTAAATTTATTCCAGGATTCCCCGCGATATGCTTTCAGTGGGAGGAGACGTTTCCCT
TAACTACGAGAAGCCTACATCGTAAAATCTCAAAATGACATGCCGGTTCATTCTCTCGAAGGTGGTCATAGGGGTAAGAT
ATGCATGTGTGCGTTTATAGGATTGAGTGTATGCGCGTTTATATGAACGCTTGCGTCTGTACTGTATTAAGAAAAGATGG
TTTGGTTTGGTTTATCCGACTCGGCCCCACGTGTAAGCGCTGCCTCCTCTCGCTCATTTACTTTTCTCGCATCGAGAGCT
CTCCCCGGAACGGCGGTGAGAAGGGACGGGCGGAGGAAAGATGCCGCACCGCGCGCGGCCGATGACGGGGCTGCTGGTGT
TCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACCCCTACTGGGACCGC
AGGGTA-----CCCCCACCCTTTCCCCGCTCATTCTTCTCCGACTGTATGCGGAAATGCCTGTGATCGTCGTTGGTTGAG
ACATACCCACTGGAAACTTCACTCGACGTGCAATTCCTAGCCAGAACGAGTGCCTGTTTGGTTGGATTCTTGTTCTAGAT
TTGCTTATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCTAGGAGCGGTTCGATAGATGAGTTGTTTGGACTGGATG
TGCTGTTTGACCAAAATGATTACA-CTTGAGGAGT-CCTTGCCCAGTTGCATTGCGCCTCTTCCAGCCGTTCTGGAAAAT
TTTCCAGGGAAACTGCATCTGC-----ACATGTTCCATGATAGACCCATCCTTGCTTCCCAACAACTGGCAATGAGAGTA
CTAGGATCTTGATTTATTGGATACAATTTTGAATTTTGTGTGTGTGTAATGTGTAATTT-TTGTCCAAATTTGCAGAGAG
AACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAAACTCTACTAGGTAAATAC
ATGCTTCCACACTTAAGAGA-----AAAAAAAATGCTTTTCCCC-TTCATGCATCTCCTTGTACTCATAGTATGGCATCA
TAGGATGATTTCCGGTGAATTAACTAAACTTCAACTACACTACACTGATATTCCATGAATAAATGCCTTTTT-TCGAGGT
GAGAAGCGCTCGTTCCTCGCATACCATTTGGTGGCAGGAAACTGGGAGATTTCACTGATGTATCCCATAGCAAATAGTCC
AATAAGTGGCCACCTCATTTTCCATTGACGCAATCTTTTTCTTTTCATTCGTGCAGGTATCTGCTTACATTATTTATTAG
CTTATCACATCCTGGATTGTTCATTTACGTGTGATGGAGAAAGTT---TGAAGTTGCGACCAGGTTTTTCAGTGTCGATG
CATCATTAGATCTTGTTTCGTGATGCTCCTGCAATGTGTGAG----TTCTCTGTAATGACAAACTGAGGAACACCAGACG
CAGTGAAATAATTTCTTTAAACTACACTGTTATG------TTATCAACTTCTTGTATTGATCTGGTGTTACATAAGCAAA
GGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAAATCATCTGGCCCCACTATATACTATATGTAGTC
TTGAAATTGTTGGTGAAGGCCAATCATATCTTCATCTAGTCTC----CCCTCTATGTTTCTTCTCCCTCAACCACATCAG
CAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGAGCACCACCAACATCTTATGT--------AAGTC
TACAAGATGACAAAAATGTGCAGGTGGGAGACAAATCCATCTTTCTTCCCCAAATTCATGGGTATGTATGTGGATTCCAA
TCCAATTGATA---------------------------------------------------------------------
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--------------------------------------CTCCTCAGCAACTAGTAAGTAGATTATACAAATCTGTCCATG
ATTTTGAGCTCATGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTGACTGCACATCTCCTT
G
>chr4D_878
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-----------------------------------------------------------------------------TGG
TTTGGTTTGGTTTATCCGACTCGGCCCCACCTGTAAGCGCTGCCTCCTCTCTCTCATTTACTTTTGTCGCATCGAGAGCT
CTACCCGGAACGGCGGCGAGAAGGGACGGGCGGAGGAGAGATGCCGCACCGCGCGCGGCCGATGACGGGGCTGCTGGTGT
TCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACCCCTACTGGGACCGC
AGGGTA-----CCCCCACCCTCTCCCCGCTCCTTCTTCTCCGACTATATGCGGAAATGCCTGTGATCGTCGTTGGTTTAG
ACATACCCACTGGAAACTTCACTCGCCGTGCAATTCCTAGCTAGAACGAGTGCCTGTTTGGTTGGATTCTTGTTCTAGAT
TTGCCCATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCCGGGGGCGGTTAGATAGATAAGTTGTTTGGACTGGATG
TGCCTGGGG--------------------------------------------GCGCCTCTTCCTGCCGTTCTTGAAAAT
TTTCCAGGGAAACTACATCTGCAC-----ATGTTCCATGATAGGCCCATCCTTACTTCCCAACAACTTGCAATGATAGTA
CTAGGATCTTGATTTATTGAATACAATTTTGAATTC----TGTATGTAATGTGTAATTTCTTGTCCAAATTTGCAGAGAG
AACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAGACTCTACTAGGTAAATAC
ATGC----------------------------------------------------------------------------
---------TTCCGGTGAATTAACTAGACTTCAACTACACTACACTGATATTCCACAAATAAATGCCTTTTTTTCGAGGT
GAGAAGCGCTCATTCCTCGCATACCATTTGGTGCCAGGAAACTGGGAGATTCCGTTGATGTATCTCATAGCAAATAGTCC
AATAAGTAGCGACCTCACTTTCCATTGACAAAATATTTTACTTTTCATTCGTGCAGGTATCTGCTTACATT----ATTAG
CTTATCACATCCTGGATTGTTCATTTACGTGGGATGAAGAAAGTTTGATGAAGTTGCGACCAGGCTTTTCAGTGTCGGTG
GGTCATTAGATCTTGTTTCGTGATGCTCCTGCAACGTGTCAGTCAATTCTCTGTAATGACAAACCAAGGAACACCAGACG
CTGTGAAATAAGTTCTTTAAACTACACTGTTATGAATCTTTTGTCAACTTCTTGTATTCATCTGGTGTAACATAAGCAAA
TGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAAATCATCTGGCCTCACTATATACTATATGTAGTC
TTGAAATTGTTGGTGAAGACCAATCATATCTTCATTCATCTAGTCTTCCCTCTATGTTTCTTCTCCCTCAACCACATCAG
CAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGCGCACCACCAACATCTTATGT--------AAGTG
TACAAGATGACAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCAGCAACTAGTGAGTAGATTGTACAAATCTGTCCACG
G-TTTTAGCTCAAGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTG-CTGCACATCTCC--
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>chr4A_1047
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------GCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACCCCTACTGGGACCGC
AGGGTACGGTACCCCCACCCTCTCCCCGCTCCTTCTTCTCCGACTGTATGCGGAAATGCCTGTGATCGTCGTTGGTTGAG
ACATATCCACTGCAAACTTCAATCACCGTGTAATTCCTAGCTAGAACGAGTGCCTGTTTGGTTGGAGTCTTGTTCTAGAT
TTGCCCCTGCGCATCTGCACATCAGCTGTTTGTGGAAATGCCTGGGAGCGGTTCGATAGATAAGTTGTTTGGACTGGATG
TGCTGTTGGACCAAAGCGATTACGCCTTGAGGAGTGCCTTGCCCAGTTGAATTGCGCCACTTAATGTCGTTCTGTAAATT
CTTCCAGGGAAACTACATCTGCACTGCACATGTTCCATGATAGACCCATCCTTGCTTCCCAACAACTTGCAATGAGAGTA
CTAGGATCTTGATTTATTGGATACAATTTTCAATTTC--GTGTGTGTAATGTGTAATTTCTTGTCCAAATTTGCAGAGAG
AACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAAACTCTACTAGGTAAATAC
ATGCTTCCACACTTTAAAAAAAATGAAAAAAAATGCTTTTCCCCTTTCATGCATCTCCTTGTACTCATAGTATGGCATCA
TAGAACGATTTCCGGTGAATTAACTAGACTTTAACTACAC--CACTGATATTCGGCGAATAAATGGATTTTC-TCGAGGT
GAGAAGCGCTCATTCCTCGCAAACCATTTGGTGGCAGGAACCTGGGAGATTCCGCTGATGCATCCCATAGCAAATTGTCC
AATAAGTAGCGACCTCACTTTCCATTGACACAATATTTTTCTTTTCATTTGCGCAGGTATCTGCTTACATT----ATTAG
CTTATCACATCCTGGATTGTTCATTTACTTGGGATGGAGTAAGTTTGATGAAGTTGCGACCAGGCTTTTCAGTGTCGGTG
GGTCATTAGATCTTGTTTCGTGATGCTCCTGCAATGCA----TCAATTCTCTGTAATGACAAACCAAGGAACACCAGACG
CAGTGAAATAATTTCTTTAAACTACACTGTTATGAATCTTTTGTCAACTTATTGTATTCATCTGGTGTAACATAAGCAAA
TGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAATTCATCTGGCCTCACTATATACCATATGTAGTC
TTGAAATTGTTGGTGAAGACCAATCATATCTTCATTCATCTAGT----CCTCTATGTTTCTTCTCCATCAACCACATCAG
CAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGCGCACCACCAACATCTTATGTAAGTGTGTAAGTG
TACAAGATGACAAAAATGTGCAGGTGGGAGACAACTCCATCTTTCTTCCCCAAATTCATGGGTATGTATGTGGATTCCAA
TCCAAGTGGTA---------------------------------------------------------------------
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--------------------------------------CTCCTCAGCAACTAGTAAGTAGATTGTACAAATCTGTCCACG
ATTTTGAGCTCATGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTGACTGCACATCTCCTT
G
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------------------------S--------------------S-------------S--------------
--S-------------S--------------------S------------------------------------------
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---------------------S---------S------------------------------------------------
-------------------------S---------------S--------------------------------------
----SS-------------------------------------S-----------------S------------------
-------S-------SS------S-------------------------S--------------S---------------
--------------S----------------------------------------------------S------------
------------------------------------SSS-----------------------------------------
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--------------S-S-S-------------------------------------------------------------
---S-S--------------------S----------------------------S------------------------
-----------S---------------------------------------S-S--------------------------
-------S--S------S-----------S----S------------------------------------SSSS-----
-------------------------------S--------------------------------S------------S--
SS-------------------------------------S------------------------SS--------------
------------------------------------------S---------------S---------S-----------
S---------------------------------------------------------S---------------------
------------------S----------------SS-SSSSS-------------------------------------
----------------------------------------------S--------------------------------S
----------------------------------S---------------------------------------------
-----S--S-----------------------------------------------------------------------
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---------------------------------------------------------------S--------------S-
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>forward_639
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-----------------------------------------------------------ATCCCCAGCCTATCAGGGTT-
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>reverse_2146
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-----------------------------------------------------------------GAGGAACACCAGACG
CAGTG---------------------------------------------------------------------------
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