>input_sequence_72827
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---------------ATGCCGAAGAACAAGGGTAAGGGAGGCAAGAACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAGGAGTACGCGCAGGTGACGCGGATGCTCGGCAACGGGCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCG
CCTCTGCCACATCCGGGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGCGACT
ACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTACTCAAGGCCTACGGGGAGCTCCCC
GACACGCTCCGCCTCAACGAGGGCGTTGACGTCGACGGCCCCGAGGAGGGCGAGGGCGACAGCGACTACATCCAGTTCGA
GGACGAGGACATCGACAAGATCTAA-------------------------------------------------------
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>chr7A_1_TraesCS7A01G333700
TAGGTTGTGTTTGCATTTTTATAGAACCTTCTTTCTCCGCAAATCCCTAAATCTATAATTAAGCTTAAAGTTTGCAACCT
CCTGTTCACCCCG------TCTAGTGGACCGTATCGATCGTTTCACCTTCCCCTCCTCCTCTCCCTCACCGCCACCCGAG
GAGGTCATCGGCAAGGCCGCGGGTCGTGCGTGACGGTAACGACGATGATCGTGTCACTTCGGTCCATCATTACGTTTGAA
ACCCAGATATGAATATTGGCAAGTGTGAAGATAAAACTCAGATGTGGAAGCAACATAACTCAGAGTGATATACAGAGGTA
TCATTCTATTTGAAACTTACCCTAAAATGATTTGCACACTAGGTACGTGGACTTGGTCAACTACTACGGATTTGCACACC
TAGGTACGCGGACCTGGTCAACTATTAGACGGCTTCCTCCATCAGCGTGGACTTTTGCCACATGGTAACACG--------
--------------------TACAGTACATGGATCCGTTTGCCTTTCCTGTTCTAGCAGTTCTC------TTTTGCTATT
CAACAGGGGTTAGAATCTTATTCCAAAATCGAAAAGAA-------GGCTGGATTCCTTGAGCACTACTCAACCAAACGGA
GGATTGGATTCCAAGTTCCAGAATCCCAATCCGCGAATAATCAAGG--AAGCCCTTTCCCCGTCGATCCCCACTTCCCAG
AGTCCTCGCGTCCTATCCTATCCCGCCCTGTCCACCCACGAACCCCTCCCCTCTCCAGAGGCCCACCTGTACACGGCACC
CTAGAGCCGAATCCCAACCTTCCATCCCTCCCAACCCTAAATCCGGCGGCCAGGACTCCTCCACGCCTCCCCTCATCGCC
CCCCGCCCCCCTCCACCTATATATTCCG-ACCCGCAAGCCCAACCCGAGCCCAGAAACCGCAGACCGCACCGCCACCGCT
CCCCATCTCGATCTAAAACCGAGGGTTTCGTCCAGCTCCGTCGCCGCG-----ACCCAAACCAGAGCCCGCCCCACCCAC
CCCAGCCAGCCAGCCATGCCGAAGAACAAGGGTAAGGGAGGCAAGAACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAGGAGTACGCGCAGGTGACGCGGATGCTCGGCAACGGGCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCG
CCTCTGCCACATCCGGGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGCGACT
ACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTACTCAAGGCCTACGGGGAGCTCCCC
GACACGCTCCGCCTCAACGAGGGCGTTGACGTCGACGGCCCCGAGGAGGGCGAGGGCGACAGCGACTACATCCAGTTCGA
GGACGAGGACATCGACAAGATCTAAGCCTTTTT----TCCTCCTCCCTCGCC---TATACTTTGTGTTCTATTCTGTTCT
AATAGCGTCTGTGTC--------------GGTCGGTGGGCTGTTGTGGATTGATGGATTTGGTAACGAGAAATCGTTGTG
ACTTGAGGTGCCTAAATAATTGTTGGATTATCGTGTTCGTCGTATTATTATTGTTTGCAACAAGCCATGGGATGATTATT
ATTATGGTGTTAATATTGTGGCTTGTGATGTTATACTCCTTGATTGGTTTGCCGTAGTTTGGGATCTTGCGGGAGCTT--
--------------ACTAATCTGATTGCACATTAGCGTCCTTTATCTACCTTGTATGTATAAATTGAGGAACACTTGGTT
CTTTGTCCTCTTCAAAAGAATAACAATTATGTTCTGTCTACTGGTTTAAGTTCAAGGGACAAAAATTGG-----AACTTA
TGATAGTATAATGTTTCTGATGGCATCATTTGATGAT---CATGTTACTAGTTCTATGCTTTGTGTTCTTTCTGCTAATT
TG--CCCACGGATTGCCAGAGGCAAAAGAGGAGGATCGGCAGGAAACAATGGATAA------------------------
----------------------------------------------------CTTAGTTATGACTATCCTGTTGCTGATT
CCATTGTTTGACGATGATCATGCTGCT-----TAAGTCTACCTCTTGTTCTTTGTGCAGTTGGATTTGCTATTT------
-----------------------CTAGTCTAATTTAACCCTAGGCAGTGTCCATAAAGAGACGGTG--------------
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---------------------------------------------------TCTATCAAAACAGTGACAAGGACAT----
-----------------TTGATGTTCTGTTTACTGATTGAAGTTCAGGGGACAAAT----TCTAACTTACTGGTGCCATT
ATGCGACGATGATCAAGTTACACTATTTTTATGCCTCCCCTGCGTTCTTTCTGCCAGTTGTGCGGTTGGATTGGCTGTTT
CACTCAAAAGTAGCATCCTCCGTCCAGGCTTAATGTTATTAACCTGGTAAATTGAAGTTAAAAGGGGATTTTTGTGCATA
TCGAAAGAACAATCCATTACTACTTGGTTCAGGGAGCACAAGATAACTACATATTACTATGGGTGTATTTAG
>chr7D_60
-----------------------------------------------------------TAAGCTTAAAATTTGCAACCT
CCTATTCACCCCCCTTCCCTCTAGTGGACCGTATCGGTCGTTTCACCTCCCCCTCCTCCACTCCGTCGTCGCCACCAGAG
GAGGTCATCGGCAACACCGCGGGTCACACGTGACGG-AACGACGATGATCATGTCACTCTATCCCATCATTATGTTTGAA
ACTCATATGCGAACATTAGCAGATGTGAAGATAAAAGCCAGAGGTGGAAGCAACATAACTCAGAGTGATATACAGGATTA
CCGTTATATTTGAAATTTACCCTGCAGTGATC------------------ACTTGGTCAACTATT---------------
----------------------------ACGGCTTCCTTCGTCAGCGTGGGCTTTGCTAGTAACACGTATACAGTATATT
TTTTTTTGACAAAACACGTATACAGTACTTGGATTCGTTTGCCTTTACTGTTGTAGCAGTTTTCTTCTCTTTTTGCTACT
CAACAGGGGTTGGATTC-TATTCCAAAATCGAAAAGAAAAACAGGGGCTGGATTCCTTGAGCACTACTCAACCAAACGGA
GGATTGGATTCCAAGTTCCAGAATCCCAATCCGCGAATAATCAAGGGAAAGCCCTTTCCCCGTCGATCCCCACTTCCCAG
AGTCCTCGTGTCCTATCCTATCCTGCCCTGTCCACCCACCAGTCCCTCCCCTCTTCGGAGGCCCACCCGCACACGGCACC
CCAGAGCCGAATCGCCGCCGTCCGTCCCTCCAAACCCTAAATCCGGCGGCCAGGACTCCTCCACGCCTCCCCTCATCGCC
CCCCACCCCCCTCCACCTATATAGTCCCAACCCGCCAGCACAACCCAAGCCCAGAAACCGCAGACCGCACCACCACCGCT
CCCCATCTCGATCTAAAGCCGAGGGTTTCGTCCAGCTCCGTCGCCGCGACCCAAGCCAGAGCCAGC---------CCCAC
CCCAGCCAGCCAGCCATGCCGAAGAACAAGGGTAAGGGAGGCAAGAACCGCAAGAGGGGCAAGAACGAGGCCGACGACGA
CAAGCGCGAGCTGGTGTTCAAGGAGGACGGG-------------------------------------------------
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------CAGGAGTACGCGCAGGTGACGCGGATGCTCGGCAACGGGCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCG
CCTCTGCCACATCCGGGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGCGACT
ACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTGCTCAAGGCCTACGGGGAGCTCCCC
GACACGCTCCGCCTCAACGAGGGCGTCGACGTCGACGGCCCCGAGGAGGGCGAGGGCGACAGCGACTACATCCAGTTCGA
GGACGAGGACATCGACAAGATCTAAGCTTTTTTCCCCTCCTCCTCCCTCGCTCGATATACTTTGTGTTCTATTCTGTTCT
AATAGCGTCCGTGTCTGTCTGTGTCGGTCGGTCGGTGGGCTGTTGTGGATTGATGGATTTGGTAACGAGAAATCGTTGTG
ATTTGAGGTGCTTAAATAATTGTCGGATTATAGTGTTCGTCGTATTATTATGCTTTGCAACAAGCCATC---TGATGATT
ATTATGCTGTTGATATTGATTTGTT----------CTCCTTGATTGCTTTGCCGTAATTTGGGAAACTTCCTGAGATTGG
CACGACTCTACTTCACTAATCTGGTTGCACATTAGCGTCCCTTATTTACTTCT---------------------------
-----TCCTCTTCGAAAGAAGAACAATTATGTTCTGTTTACTGATTGAAGTTCAAGGGACAAAAAATTTAGACCAACTTA
TGAT------ATGTTGCTGATGCTATCATGCAATGATGATCATGTTACTAGTTTTATGCTTAGTGCTCTTTCTGCTAATT
GTGCCCAACGAATTGGCAAACGCAAAAGAGTAGGATCAGCAATCACCTGTGATTTTCATTTAATCCTAGCGGGTGTCCAA
AATATGGCTTCATATATCTCGAAGCACTGATTGACGGTCAGGGGACAAAGGTCTTAGTTATGAATATCGTGTTGCTGATG
CCATTATGTGACGATGATCATGCTGCTATTTTTATGTCTGCCTTGCGTTCTTTGTGCAGTTGGATTTGCTTTCATTCATA
ACAATTCTGTTCTTAGGACCTTCCTAGTCTAATTTAACCTTACGTAGTGTCCATAAAGAGACTGTGATGCTTCTCTATCA
GAGATTTGAACTAATGATACTATATCATGTTGCTGATGAGTAGGATCAGCATTCAAACCGCAGCGGATGTCCAAAATATA
GGGCAGTACATGTCTCAAAACAGGGACATACCAGTACTTGTCAAAAGGATGTTCTGTTTACTGATTGAAATTCAGAGGAC
ATGATATCTTTAGTTATGACTATCCTGTTACTGATGCCATTATGTGACGATGATCATGCCGCTATTTTTATGCCTGCGGT
TTGTATGTACGATGGTTGATAAGGCAGTTTACAATTTTAGCTTCATCCTGCCACGTAATCTATGACAAAAAAATATGGTG
TGCAATGGTTGTCTCTTAACTTGTCTTTATTAACTAGATAGATATTTCTCAAAATGTGGTGAGAGATTTGTTGTTGAGAG
ATCCTCTTAATAATTAAGAGAAGGCATAGCCTTTCTTCGTTTCTCTTCCTCCACCTAAGCATTATCCTACATGGCACTGC
TAAGATAGTACCACGTACATGCCTTAACAATCCACTCTTTTATGATGCTTCTCTATCAAAACAGGATACCTGTACAGCTG
TACTTGTCAAAAAGACATTGATCTTCTGTTTACTGATTGAAGTTCAGGGGACAAAGGATATCTAACTTACTGATGCCATT
ATGTGACGATGATC------------------------------------------------------------------
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>chr7B_478
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-------------------------------GATTCGTTTGCCTTTCCTGTTCTAGCGGTTCTC------TTTTGCTACT
CAACA-GGGTTGGATTC-TATTCCAAAATCGAAAAGAAAAACAGGGGTTGGATTCCTTGAGCACTACTCAACCAGACGGA
GGATTGGATTCCAAGCTCCAAAGTCCCAATCC---------------------------CCGTCGATCCCCACTCCCCAG
AGTCCTCGTGTCCTATCCTGC----CCCTGTCCACCCACGAACCCCTCCCCTCTTCGGAGGCCCACCCGCACACGGCACC
CCAGAGCCAAATCGCCGCCGTCCATCCCTCCCAACCCTAAATCCGGCGGCCAGGACTCCTCCACGCCTCCCCTCATCGCC
CCCCACCCCCGTCCACCTATATAGTCCCAACCCGCCAGCCCAGCCCGAGCCCAGAAACCGCAGACCGCACCACCACCGCT
CCCCATCTCGATCTAAAACCGAGGGTTTCGTCTAGCTCCGTCGCCGCG-----AGCCAGAGCCAG----------CCCAC
CCCAGCCAGCCAGCCATGCCGAAGAACAAGGGTAAGGGAGGCAAGAACCGCAAGAGGGGCAAGAACGAGGCCGACGACGA
CAAGCGCGAGCTGGTGTTCAAGGAGGACGGG-------------------------------------------------
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------CAGGAGTACGCGCAGGTGACGCGGATGCTCGGCAACGGCCGCTGCGAGGCCATATGCGTCGACGGCACCAAGCG
CCTCTGCCACATCCGGGGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGCGACT
ACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCCGCCTGCTCAAGGCCTATGGGGAGCTCCCC
GACACGCTCCGCCTCAACGAGGGCGTCGACGTCGACGGCCCCGAGGAGGGCGAGGGCGACAGCGACTACATCCAATTCGA
GGACGAGGACATCGACAAGATCTAAGCTTTTTC----CTCTCCTCCCTCGCTCGATATACTTTGTGTTCTATTCTGTTCT
AATAGCGTCCGTGTCTGTCTGTGTCT----GTCGGTGGGCTGTTGTGGATTAATGGATTTAGTAACGAGAAATCGTTGTG
ATTTGAGGTGCTTAAATAATTGTCGGATTATAGTGTTCGTCGTATTATTATGCTTTGCAACAAGCCATC---TGATGATT
ATTATGGTCTTGATATTGATTTGTT----------CTCCTTGATTGGTTTGCCGTAATTTGGGA----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------
---S--------S-----------------------S-----------S----------S----S--SS-------S---
--------------SS---------SSS--------S-------------S-------SSSSS---------S-------
--S--S--SS---S---S---SS-------------SS----S--------------------------------SSS--
S-S--S---------S-------SS-S----SSSSSSSSSSSSSSSSSSS-------------S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-S---------S----SSSSSS-SSSSSSSSSS--------
----------------------------S-----S-------------------------------------------S-
-----------S--S--S--------------------------------------------------------------
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--------S--------------S------------------------------S-S----------S-S----------
-S-----------S-SS--S------------------------------------------------------------
----S------------------S---S-------S-----------------------------------S--------
------------------------------------------------------S---S-S-SSSSSSSSSSSSS-----
---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
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-------------------------------------------------------S------------------------
--------------------------S-----------------------------------------------------
---------------------------S-----------------------S----------------------------
---------S----------------------------------------------------------------------
-S---------S-----------S-------S-------------------SS---------------SSSS----S---
-----------S------SSSSS-SSSSSSSSSSS---------------------S-------SSS-S-SS---S----
-----------------------S----------------S----S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------S------S----------------S-----S--S------------------S-SS-----------
----SSSSSS-----S------SS-----SSS---------------------S-------S---S--------------
SS----S---S----S--S-S---------S------S---SSS-S-SS--SS-SS------------------------
---------------------------------------------------------------S----S----------S
-----S-S--------------------------S----S---SSS------------------------S-SS------
---------------------------------------S--S-S-----------------S-----------------
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----------------------------------------------------------------SSSSSSS-SSSS----
----------------------S--------------------------------S----------------S-------
---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_426
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------CGCGGACCTGGTCAACTATT------------------------------------------------------
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>reverse_2256
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---------------CCAGAGGCAAAAGAGGAGGA---------------------------------------------
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