>input_sequence_72782
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----------------------------------------------------------ATGAAATATTTCCGCGGACGCC
TCCCCGCTTCCCTCCCCGCTAGGCGGCCCGAGATCCCAATTTTCGTCCAAATTTCCAAGATTTGCCGGCGCTTCGTCGAA
CCAAAACAGCAAAACCCACAGATTCGTCCCCTCCCTCCACTTCTACCCAGCCTAAATTTCCCTCCGAAACTCAAATCTTC
TGGCCTGCTCCCTCCCTCCGACCTCCGGTACAAATACCCATGGATTCTTCCCTCCCTTCGCCAGCACCACCCGAGCTACC
TCCCGGCCTGGTACCACCAACCTCCAATCCGAAGAGCCTCTGCTCGTATGAGCTCCAAGATGGCAGCTGACAGCGGCGAC
CAGGAGAACCTGCCGCCTAGTACAACGCCTCCGACTGCGACGGCTGCTGTCGTCCGCCCTCGTCATTTTGGGGTCAAGAA
AGGCCAGATGAAGCGGCTCGGCAGGGCGCGGAGGCGGGCGCCGCTCAAGGACATCACCAACCACTTCGCCGTGGAGACTG
CATCTGCCGAGGTGCAAGCTCTGCAGCAGCCGGAGGAGGGGTCGGAGGGGGACACGGCGAAGGAGGAGCCGGCGGCGCAG
ACGAACGCGCTTGCCAGTGCTGCGTCTGTTAAGGCGAGGAGGAACTCGCTCCGGAAGGAGTTTAGATAG-----------
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>chr2D_1_TraesCS2D01G231400
ATGAATCAAACCCTAGTCCGGGTGAGTACATACCAGGG-GTAACACCTGTGATGCGCATGCAACTTCTTTGCCATCCAAA
AATGACACACTAGCGTTGGAGGAGG-ATCATGACGGGGAA-GGGCGGTGGGGAACCAAGGCGGCGATGGGGGTTACCGTC
CGA-TGATGGAAGCAATGTTTGGTGGAGACATGGAGTAGACACTGGCGAGACACAACAACAACATCAGAGCAACTGTAGC
CGTGGTAGAGCCGGTGGTGCGGAGCAAGGAGGCGGCGGAGGTAGCCGCCGTGGTGCGCGGGCACGGTGAGCTCGGGGATG
GGCTCACCCGTGCGTTGGGAGATGGGATAGGGTTGGTGGGCCTGGGAGGTATGATTTACTCACCCCATACGGTTAATTGA
TGGATCAAATAGAAATATCCATTGTGGAATTAAAGAATTAACGGCCCATGACCAGTTTGATGAAAAATTCCAATTCGAAG
TATTTTCAATCAATATTTGGGAAAATACGACAATGTGCTTATAACCTAAAAGAAACGAGCCCGCCATCGTTGAGAGATGA
CAAGTTGACTGTCATGT-GCCGTGGACCAATCTGCGGTTGGATGGTTAGGGGGACAGTGGTATATCCAACCCACAAGATT
TCAAGTTCTATAGTTGACATTGACGCTCGCATTTTCTGAATTTATT-CAGGCCTTTCGACGATGTGTGTTTAATGGGAGA
ACACATTATCGTCGACTACGAAGGCGTCTGCCACGACCTTATCAATCTCAAAATGATATGTTGGCTCAATCTCTCAAAGA
TGTTCATAGGAATATACATGTGTACGTGTGTTCATAAGGATTAGTG--TGTGCCTATGTACGAGTGTGAGAAAA------
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--GGCTGTCAC-GGGCCACGATTCGCCACGGCGCCACCGACCGCCAATTTTGACGTCACAAAACGGGCTGCGAACAGCGC
ATACCGCCCACCATCCACGTGAATCTCCCTCCTAGCCAG-GCAGCAGACAACCCCAAAATGAAATATTTCCGCGGACGCC
TCCCCGCTTCCCTCCCCGCTAGGCGGCCCGAGATCCCAATTTTCGTCCAAATTTCCAAGATTTGCCGGCGCTTCGTCGAA
CCAAAACAGCAAAACCCACAGATTCGTCCCCTCCCTCCACTTCTACCCAGCCTAAATTTCCCTCCGAAACTCAAATCTTC
TGGCCTGCTCCCTCCCTCCGACCTCCGGTACAAATACCCATGGATTCTTCCCTCCCTTCGCCAGCACCACCCGAGCTACC
TCCCGGCCTGGTACCACCAACCTCCAATCCGAAGAGCCTCTGCTCGTATGAGCTCCAAGATGGCAGCTGACAGCGGCGAC
CAGGAGAACCTGCCGCCTAGTACAACGCCTCCGACTGCGACGGCTGCTGTCGTCCGCCCTCGTCATTTTGGGGTCAAGAA
AGGCCAGATGAAGCGGCTCGGCAGGGCGCGGAGGCGGGCGCCGCTCAAGGACATCACCAACCACTTCGCCGTGGAGACTG
CATCTGCCGAGGTGCAAGCTCTGCAGCAGCCGGAGGAGGGGTCGGAGGGGGACACGGCGAAGGAGGAGCCGGCGGCGCAG
ACGAACGCGCTTGCCAGTGCTGCGTCTGTTAAGGCGAGGAGGAACTCGCTCCGGAAGGAGTTTAGATAGAGTTCAGTTCA
TTGTACAGTGGGATTGGGTAATTGGACGGAATTCATTATTTGTACTATTCTGATTTCATTCTCGAAGCCCATGGTTCATT
GGGCTGGATTTTGTTCGCTGG----------------------------------GAGGTTCTGAGCAAGAAGGAAGATG
AATTCAAACTGATATCTCATTGATAGAAGTATGAGTCTTAATCTGGAAGTGTTCGACGACTCATTCACGGAAATTTTGAT
GCTCGTAGTTGGCTATATGTTTCTCTAGTTCCTTTTAGTATCTCTTCAGTGTTCTGCGTTTCAGTCATTTACCCCTGTCA
GGCTGAAAGTCTTTATTTCTAGTCTCTGGATCTGTATGTCACGAAATATGCTTTCGCACCGCTTTATAAAATAAAACAAC
CATCCATACAACCAATATTCAAATGTCATAGCAAATAAGACGATTGGGCAACAACACAATCACGCCTAAAAAAAATAAGA
AAAAAAGAAAAAAGCCATCGAGTGATGGCCGCCATGAGGCCCATACAAAGAAGATAAGCGATGCACGGTAACTAGAAGCG
CATTTAGCATGAGCCCGAACTGGTTGCGGTCGCGCTGCTTAGACAGCGGGTGCCAGTGTTGCAGAAAATTAAGGAGTTTT
AAAAAGTCAGAGCCCTGTTGCGGAAAGACTTGCTCAATCATAATTTTATTGTGTGTCGTCCATAACGTCCATGACTGGAT
CTGTATGTACAAACACTAAAATTGAAACCATTCACTTCATTACAGATGGGTCCACCAGCGACTCACAAAGCCCGATGCAG
CATGAGCTCGCATTCCTAGCGAGCTTCCAATCTTAGGGCCTCTTTGATTCGTAGGATTTTAAAAACGTAGGAATAGGAAA
AGTATAGGGTTGGAGTGGCATGCTCACTTGAATCCTATAGAATTAGCAATGAGTGTTTGATGGCACAGGAAAAACAGACA
AATTGTAAAAAGAGGTTGGAGTGGATGTTAGATTTCCTATGAAATGTAGTACAAAAGATTTCA
>chr2B_1
ATGAATCAAACCCTAGTCCGGGTGAGTACATACCAGGGTGTAAGGCCTGTGATGCGCGTGCAACTTCTTTGCCATCCAAA
AATGACACACCATCGTTGGAGGAGGGATCATGACAGGGAAGGGGCGGTGGGGAACCAAGGCGACGATGGGGATTACCCGT
CCGGTGATGGAAGCAATGTTTGGTGGAGACGTGGAGTAGACACGGGCGGGACACAACAACGACACCAGAGCAACTGTAGC
TGTGGTAGAGCTGGTGGTGCGGAGCAAGGAGGTGGCAGAGGTAGCCACCATGGTGCGCGAGCACGGTGAGCTCGGGGATG
GGCTCACCCATGCGTCGGGAGACGGGATGGGGTTGGTGGGTCTGGGAGGTGAGATTTACTCATCCCAAATGGTTAATTGA
TGGATCAAATAGAAATATGCACCGTGGAATTAAAGAATTAACAGTGCATGACCAGTTTGATGAAAAATTCCTATACGAAG
TATTTTTTATCAATATTGGGGAAAACACGACAATGCGCTCATAACCCGAAAGAAACGAGCATGCCACCGTTGAGACATGA
CAAGTTGACTGTTACGTGGCCGTAGACCAATCTATGGTTGGATGGTTAGCGGAATAGTGGTATATCCAACACGCCAGAGT
TCAAGTCCTATATTTGACATTGGCACTCGCATTTTCTGGAGTTATTTCAGGCCTTCCAATGAGGTGCGTTTAATGGGAGA
AGACGTTATCGTCGACTACGAAGGCGTCTGCCGCGACCTCGTC--TCTCGAGATGATATGTCGGCCAAATCTCTTAGAGA
TGCTCATAGGAATATACATGTGTGCATGCCTTCATAAGGGTTAG------------------------------------
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>chr2A_3
--GAATCAAACCCTAGTCTGGGTGAGTATATACACGGG-GTAACGCATGTGATGCGTGTGCAACTTCTTTGCCATCCAAA
AATGACACACGAGCGTTGGAGGAGG-ATCGTGACAGGGCGGGGTCGGTGGGGAACCAAGATTGCGATGGGGATTACCCGT
CCGGTGATGGAAGCAATGTTTGGTGGAGACGTGGAGTAGACACGGGCAGGGCACAACAACGACATCAGAGCAGCTGTAGC
CGTGGCAGAGTTGGTGGTGCGGAGTAAGGAGGTGGCGAAGGTAGCAGCCGTGGTGCGCGAGCACGGTGAGCTCGGGGATG
GGCTCACCCGTGCGTTGAGAGACGGGGTGGGCTTGGTGGGCCTGGGAGGTGAGACTTAGTCATCCCAAACGGTTAATTGA
TGGATCGGATAGAAATATACACCGTGGAATTAAAGAATTAACGGTACATGACCAGTTTGATGAAAAATTCCTATACGAGG
TGTTTCCGATTAATATTGGGAAAAACACAACAGTGCGCTTATAACCTGAAAGAAACGAGTCCGCCACTATTGAGAAATGA
-AAGTTAACTGTCACGTGACCGCGGACCAATTTGTAGTTGAATGGTTAGGAGGATAGTGGTATTCTGAACCCATCAGAGT
TCAAGTTCTATACTTGACATAGGCGCTCGTATTTTATCGATTTATTTCAAGCCTTTTGACGGTGTGTGTTCAGTTTGAG-
AGACGCCATCGTCGACTATAAAGGCGTATGCCGCGGCATCATCAATTTCAAGATGATATGTCGACTCAGTTTCTTTGAGA
TGCTTATATGAATAGATATGTGTGCGTGCTTTCATAAGGATTAGTATATGTGCGTATGTATGAGTGTGAGAAAACCTAAG
GTCTAGTCTTCATTGGTCGTGCCTCGCGGTTGCCTTGATGAAGGATTTGTTTTGAGAGCATAGACTTTCTTGAGGGTGAA
AATCTAAAATTTTGGATTGGGCAACGACGACGCTTGTGCGCTGTTTTCTTTTCGAAGGCGTTGCTTCCGAAGACCTTTTA
TATTTTCCGGGTGTTATCTTTGGTGATGGCATGAGTGCTATCATTGAGAGGAGTTGATCGTTGTAGCGGGACCTTTGTTT
TTTTCCTTTCTTTTTATTTCTTCTTTGGCAGTGTGCATACAAGATGTCTTGTTGATGCAGAGACGGGTGTAATTAGTATC
TTCGCGATATTAATTTATCTATACCTACTATTAAAGGGAATACGTATTCTTGATTTGGTTTAGTCCTTTTCGTTTGATTT
GAGTGCATGCTAAGCGATCTGGGCCAGATACTTGTACGTTGATGGGCCTTTTATGGGCTTTTATAGAGACCGCGAATAAT
AATTAGGTCTATACCTACTATCAAAGGGAATAAGTATTCTTAGTTTGGTTTAGTCCCTTTCATTTGGTTTGAGTGCACGC
TAAGCGATATGGGCCAGATACTTGTACGTTGATGGGTCTTTTATGGGCTTTTATAGAGAACGCGAATAATAATTAGGTCA
AAATCAATATTGTCGGAATTGATCACAGGAACTCCTATCTGGATGTCTTATGTAACAACCAACGACCTATACACCATTCA
CATTTATTAATCCCAACTCGTTCTAAATATACGAGTGGCAGCCCTCGTGTTTAGGGCGAGCTAATTAAAGAAAGGACTTG
AGGTAAAAAATATAACATAATTTAAAAAAGATTTGTAGGCTTTCATGTGTTGGGCTACTAAATTAGAAAAGAAACAATTT
GATTTCCGACTAAAACGGGTAAGGACGTCATGGTAACTAAAGGAAGAATTTTATTTAAATGGAATCGATGGAAGATTATG
CCCGGCAAAGAAAATATAACACGGCTAAATTGCATTGTATTTTTTTATGTTCATTTTATAGAGGATGCTATGAGACATTA
TACTTGAATAAAACATTATTTTTTTCCGTTGCAACGCACGGGCATATGTGCTAATTCTTTTAAAAAAATGAGAGTGAGAA
AAGGCTGTCACGCGGCCACGATTCGCCATGGCGCCACCGACCGCCAATTTTGACGTCACAAAACGAGCTGCGCACAGCGC
ATACCGCCCACCATCCACGTGAATCTCCCTCCTAACCAAAGCAGCAGAGAAGCCCAAAATGAAATATTTCGGCGGACACC
TCCCCGCTTCCCTCCCCGCCAGGCGGCCCGAGATCCCAATTTTCGTCCAAATTTCCAAGATTTGCCGGCGCTTCGTCGAA
CCAAAACAGCAAAAACCACAGATTAGTCCCCTCCCTCCACTTTTACCCAGCCTAAATTTCCCTCCGAAACTCAAATCTTC
TGGCCTGCTCCCTCCCTCCGACCTCCGATACAAATACCCATCGATTCTTCCCTCCCTTCCCCAGCCCCACCCGATTAACC
TCCCGGCCTGGTACCACCAACCTCCAATCCGAAGAGCCTCTGCTCGTATGAGCTCCAAGATGGCAGCTGACAGCGGCGAC
CAGGAGAACCTGCCGCCCAGTACAACGCCTCCGACTGCGACGGCTGCTGTCGTCCGCCCTCGTCATTTTGGGGTCAAGAA
AGGCCAGATGAAGCGGCTCGGCAGGGCGCGGAGGCGGGCGCCGCTCAAGGACATCACCAACCACTTCGCCGTGGAGACTG
CATCTGCCGAGGTGCAAGCTCTGCAGCAGCCGGAGGAGGGGTCGGAGGGGGGCACAGCGAAGGAGGAGCTGGCGGCGCAG
ACGAACGCGCTTGCCAGTGCTGCGGCTGTTAAGGCGAGGAGGAACTCGCTCCGGAAGGAGTTTAGATAGAGTTCAGTTCA
TTGTACAGTGGGATTGGGTAATTGGACGGAATTCATTATTTGTACTATTCTGATTTCATTCTCCAAGCCCATGGTTCATT
GGGCTGGATTTTGCTCGCTGGTTTCCGCTTTCCTCTATTGTTGATTATAGGAAACGAGGTTCTGAGTAAAAAGGAAGATG
AATTCAAATCGATATCTCATTGATAGAAGTATGAGTCTTAATCTGGAAGTGTTCAATGACTCATTCACGGAAATTTCGAT
GCTCTTAGTTGACTATATGTTTATCTA-----------------------------------------------------
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>chr2B_835
TTAGAGTTGC----------------------------------------------------------------------
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---------------------------------------------TCTTATGTACTAGGGTCAA----------------
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------------------------------------------------------------------------------AA
AAGGCTGTCACTGGGCCACGATTCGCCACGGCGCCACCGACCGCCAATTTCGACGTCACAAAACGGGCTGCGCACAACGC
ATAGCGCCCACCATCCACGTGAATCTCCCTCCTAGCCACGTAGTAGACTACCCCCAAAATGAAATATTTCGGCGGACGCG
TCCCCGCTTCCCTCCCCGCCAGGCGGCTCCAGATCCCAATTTTCGTCCAAATTTCCAAGATTTGCCGGCGCTTCGTCGAA
CCAAAACAGCAAAACCCACAGATTCGTCCC-TCCCTCCACTTCTACCCAGCCTAAATTTCCCTCCGAAACTCAAATCTTC
TGGCCTGCTCCCTCCCTCCGACCTCCGATACAAATACCCATGGATTCTTCCCTCCCTTCCCCAGCACCACCCGAGCTACC
TCCCGGCCTGGTACCACCAACCTCCAATCCGAAGAGCCTCTGCTCGTATGAGCTCCAAGATGGCAGCTGACAGCGGCGAC
CAGGAGAACCTGCCGCCTAGTACAACGCCTCCGACTGCGACGGCTGCTGTCGTCCGCCCTCGTGATTTTGGGGTCAAGAA
AGGCCAGATGAAGCGGCTCGGCAGGGGGCGGAGGCGGGCGCCGCTCAAGGACATCACCAACCACTTCGCCGTGGAGACTG
GATCTGCCGAGGTGCAAGCTCTGCAGTAGCCGGAGGAGGGGTCAGAGGGGGACACGGTGAAGGAGGAGGCGGCGGTGCAG
ACGAACGCGCTTGCCAGTGCTACGGCTGTTAAGGCAAGGAGGAACTCGCTCCGGAAGGAGTTTAGATAGAGTTCAGTTCA
TTGTACACTGGGATTGGGTAATTGGACGGAATTCGTTATTTGTACTATTCTGATTTCATTCTCCAAGCCCATGGTTCATT
GGGCTGGATTTTGTTCGCTGG----------------------------------GAGGTTCTGAGTAAGAAGGAAGATG
AATTCAAATTGATATCTCATTGATAGAAGTATGAGTCTTAATCTGTAAGTGTTCAATGACTCATTGATGGAAATTTTGAT
GCTCGTAGTT----------------------------------------------------------------------
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>SNPs
--------------------------------------------S------------S----------------------
----------S-----------------------S------------------------------------S-----SSS
-SS---------------------------S------------S----S-----------S-------------------
-----------S--------------------S--------------------------S--------------------
----------------------S-----S---------------------SS----------S----S------------
------------------S--SS---------------------SS-------------------------S--S-----
-------S---------S-------S---------S-----------S------------------S--------S----
--------------S-------------------S-------------------S-------------------S---S-
------------S---------S---------------S-----------------------------------------
-S--S---------------------------S------S-----------S---------S------------S-S---
--S--------------------S----SS---------------S-------S------S-------------------
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------------------------------------------------------------------------S-------
--------------------------------------S---------S---------------------S---------
-------------------S------------------------------------------------------------
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---------------------------S-------------------------------S--------------------
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------------------------S-------------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------------------------------------------S-------------
--------S---------------------------------------------S-S-----------------------
-----------S----------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_221
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-----------------------------------------ACTGGCGAGACACAACAACA-------------------
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>reverse_3248
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-----------------------------------------------GCAACAACACAATCACGCCT-------------
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