>input_sequence_72777
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------------------------------------------------------------------ATGCAGCCGGCGCC
GCCCGCCCGGACCGCCGGCTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGATCGTCT
GCTCGGCCTTCCTCACCCTGCTCCTCGTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCG
CGCTTCCACGTCGTCGCCTTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGGCGTGGTCTTT---TCTGG
GCAGCTCTCCATCCGCAACCCGAACCGGGACGTGGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTCTACCGCCAGT
ACGGCGCCGTCGTCAGGGACCACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCC
TTCGAGGGCGTCGCCGTGCCGGCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCGGGAGGTGGCGCGGT
GGAGTTCACGGTGAGGGTCCGGTCGAGGATCCGGGCCAAGGTGGCGGTCTGGGGGTCCCACTGGCACCCGCTCCACGTGG
ACTGCGACGTGGCCGTGGGCCCCGACGAGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGCTGCGCCATAGACTTCCTCTAG
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>chr2A_1_TraesCS2A01G476400
GGCTACCCCGCCGAGTTCTTTGCGGACTTCGTGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCACGCA
GGGCGAGGTCAGGCGGCGCTGCGGCGCCGTGAACCCGATTGGCATGTAGGCCGCTGGCGGTGGTCAGTGATCACCGGCCC
GTAAATTATCGAAAGT-------CTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACATTTGTGTGCATCATTGT
CTTTCTTCATTTGCATTGTTTGTT----TGTGCGATGTATTCAAATTCAAAT-AAAATGTTTGCTTGATTGATTCGGTGG
AATAAAA-----TGCCAGCCTCGATGAACACTC-----------------------------------------------
-----------------TACAGGAAACTTGAGGCTGGGATGTGCTTTCTGGCAGAAGAGTTTACTTGGTGCCATGGATAT
TCTATT-----TCCGTAGGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAGATTAAGCCAGCTCCACATGGATG
GACGTGGACCACGCCATCCACTCGTCAACTCTTCAAGCTTGCCTCACACTCCTTGTACACTTCCTTTCC-----------
------------------AGCCTTTTGGTCATTATTATCCGGTAAATTT-GTTAAGGCCAGTTGAGTTGTGAGTAAAAAG
AAGATAATTAATTT-ATTATAATCTCATGAGAC------CAGGTTTATGATAATTTCAGACAACTAATAATCAGCAACAT
TTT--TTGTTTGAGCTGAGCAATATTTTTTTGATCATCATTTGTAT--------ACACCACCTTTCTTTGCTCGT-----
-----------CCAGTGATATCACCCCAAGTTCCCAACCGAAAGACAGTGAAC----CGGAATATACCGTACACCAAAGC
TCGAAGAAACCTAGCTGGGT---TAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTGTCTTCAAAGA
ATCACCACGGACCAGTATAACACCCGAAACAACGACGTAATCAAACCTGTACATGCACGCCAAT------------GCA-
-----------CACGTAGGGTGACCAGAGACCGGACAAGGG------GGCACGCGCGCGCGCCGCCATGCAGCCGGCGCC
GCCCGCCCGGACCGCCGGCTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGATCGTCT
GCTCGGCCTTCCTCACCCTGCTCCTCGTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCG
CGCTTCCACGTCGTCGCCTTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGGCGTGGTCTTT---TCTGG
GCAGCTCTCCATCCGCAACCCGAACCGGGACGTGGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTCTACCGCCAGT
ACGGCGCCGTCGTCAGGGACCACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCC
TTCGAGGGCGTCGCCGTGCCGGCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCGGGAGGTGGCGCGGT
GGAGTTCACGGTGAGGGTCCGGTCGAGGATCCGGGCCAAGGTGGCGGTCTGGGGGTCCCACTGGCACCCGCTCCACGTGG
ACTGCGACGTGGCCGTGGGCCCCGACGAGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGCTGCGCCATAGACTTCCTCTAG
GTGCGGTCCGCCTGCATGAGTACGCACATAACAAGCGTTTAGT---------------------AATAACATTCCAATGT
AATCTGCCG-------GCAAGTAATTAACATCATATAATTCCAAATCAAACC----------------------------
--CAAACCAAATCCTTGATTGTGGGGCCCATCACCTGTTGCTTCTGTGTATAATTCCATTGCCTCCTCCATGACTTTGGG
CTGTGATAAAAGCCTTGCTCTTCTCCTCCACGATGGATGAGTTTTGAATGGGAAGAAAGAGAGCAAATCTGTCAACGCCG
ACTCCCCTTCCATCCTTCCTACCTTGCCAAAGAACAAAGGGGCAGCGTGGGGGTCGAAACCAGCAGCAGCCAGTAGCATC
ATTCCAATGTAGTCCGCCTCTAGCTCATTCCTACAATACGGAGTGGTACATGTAATGTAATTAACATTATACTCCCTCTG
TCCGAAAATAAATGTCTTAATTTTAGTAGTACAACTTTGTATTAAAGTTAATACAAAGTTGAGACACTTATTATTTTGAG
ACGGAGGGAGTACATTCATACTCTTACAAAACAACATCGTCTAAGTAACACGAAGTAAATACTTGCATACACAAACACT-
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--------------------------------------TTAAGATGCATGCATGAACAAGGGTGGGGTTAAAAGAAGTGA
TGAAATTAATATAC----CTTCGTAGCAATGGCGCCACGAGGAGGTTGGTTGGGAACCACAACCTGAATATTTGGATCAT
CTCAGACGAGTGCCCCGCAATAACATGCCCAACCTATATATGTATATAGAAACCAATAAACAATACTACCGGCTTTGAAA
ATTAACAACCTCAGTAATCCAAAACCAACGAACAAACAAACAGATGTATGTACCTCATGCGCGATGAAGGAGGCAATCTC
AGCATCCGTGCTGAAACGATCAAGTAATCCCGTGTAGACTACAATCTTACCACTGCCGCCAAAGCAATGTCCTTTCTTGC
TGTTCTGTTCGGCAACTATCACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACATCGC
>chr2B_1
GGCTACCCCGCGGAGTTCTTCGCAGACTTCGTGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCGCA
GGGGGAGGTCAGGCGGCGCTGCGGCGCCGTGAACCAGATGCGCATGTAGGCCGCCGGCGGTGGTCCGTGATCATCGGCCC
GTAAATTATCCAAAGT-------CTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACA-TTGTGTGCATCATTGT
CTTTCTTCATTTGCCTTGTTTGTTCGTTTGTACCATGTATTCAAATTCAAATAAAAATGTTTGCTTGATTGATTCAGTGA
AATGATGTCCTCTGCCAACCTCGATGAACACACTACGACAGAGAGAATTGGAGTTGTATTTTCCGATTATTCTCGGCT-C
GTACACGGTACAC---GTACAGGAAACTTGAGGCTGGGATGTGCTTTCTGGCAGAAGAGTTTACTTGGTGCTCTGGATAT
TCTATT-----TCCGTAGGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAAATCAAGCTAGCTCCACATGGATG
GGCGTGGACCACGCCATCCACTCGTCAACTCTGCAAGCTTGTCTCACACTCCTTGTACACTTCCTTTCTAGCCTTTTGGT
CT--TTTTTTTGCGGAGAAGCCTTTTGGTCATTATTATCCGGTAAATTT-GTTAAGGCC-----AGTTGTGAGTAAAAAG
AAGACAATTAATTT-A--ATAATTTTACGAGAC------CAGATGTACGATAATTTCAGACAACTAATAATCAGCAACAT
TTTCTTTTTTTGCTCGAAATCCT----------------TTTGTAT--------ACACCACCTTCTTTTTGCTCGTCCAA
TGATTATCATCCCA--------------AGTTCCGAACCGAAAGACGAGGAATCGGAAT--ATATACCGTACACCAAAGC
TCGAAGAAACCTAGCTGGGT---TAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTTTCTTCAAAGA
ATCACCACGGGCCAGTATAACACCCGGAACAACGTCGTAATCAAACCTGTGCATGCACGCCAAC------------GCGC
GCGTACGCACGCACGTAGGGCGACCAGAGGCCGAACAAGGGGGCAGGGGTACGCGCGCGCGCCGCCATGCAGCCGGCGCC
GACCGCCAGGGCCGCCGGCTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGGTCGTCT
GCTCGGCGTTCCTCACCCTGCTCCTCCTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCG
CGCTTCCACGTCACCGCCTTCTCCGCCGCCGGCATCCAGCCGGCCGGTGGCGCCAACGCCGCCGTGGTCTTT---TCCGG
GCAGCTCTCCATCCGCAACCCGAACCAGGACGTAGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTGTACCGCCAGT
ACGGCGCCGTCGTCAAGGACCACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCG
TTCGAGGGCGTCGCCGTGCCGGCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCAGGAG---GCGCCGT
GGAGTTCACGGTGAAGGTCCGGTCGAGGATCCGCGCCAAGGTGGCCGTCTGGGGCTTCCACTGGCACCCGCTCCACGTGG
ACTGCGAAGTGGCCGTGGGCCCCGACGGGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGTTGCGACATAGACTTCTTGTAG
GTGTAATCCGCCTGCATGAGTACGGACACAACAAGGGTTTAGT---------------------AA---CATTCCAATGT
AATCTGCCG-------GCAAGTAATTAACATCATATACTGTTGAAAAACAACATCTTCTATAGGTTAATTAGAAGATTAA
GACAAACCAAATCCTTGATTGTGGGGCCCATCACCTGTTGCTTCTCTGTATATTTCCATTGCCTCCTCCATGACTTTGGG
GTGTGATAAAAGCCATGCTCTTCTCCTCATTGATGGATGAGTTCTGAATGGGAAGAAAGAGAGCAAATCTGTCAACGCCG
ACTCGCCGTCCATCCTTCCTGCCTTGCCAAAGAACAAAGGGGCAGCGTGGGGGTCGAAACCAGCAGCAGCCAGTAGCATC
ATTCCAATGTAGTCCGCCTCTAGCTCATTCCTACAATACGGAGTAGTACATGTCATGTAATTAACATCAT----------
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-----------ACATTCATACTCTTACAAAACAACATCTTCTAATTAACACCAAGTAAATACTTGCATACACACACACT-
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--------------------------------------TTAAGATGCATGTATGAACAA-GGTGGGGTTAAAAGAAGTGA
TGAAATTGATATACGTACCTTCGTAGCAGTGGCGCCACGAGGAGGTCGGTTGGGAACCACAACCTGAATATTTGGATCAT
CTCAGACGCGTGCCTCGCAATAACATGTCCAACCTACATA--TATATAGAAACCAATGAACAATACTATCGGCTTTGAAA
ATTAACAACCTCAGTAATCCAAAACGAACGAACAAACAAGCATATGTATGTACCTCATGCGCGATGACGGTGGCAATCTC
AGCATCCGTGCTGAAATGATCAAGTAATCCCGTGAAGACTATAATCTTACCACCACCCTCAAAGCAATGTGCTCTCTTGC
TG---TGTACGGCAACTATCACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACGTCGC
>chr2D_1
GGCTACCCCGCGGAGTTCTTCACGGACTTCGTGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCGCA
GGGTGAGGTGAGGAGGCGCTGCGGCGCCGTGAACCCGATGGGCATGTAGGCCGCCGGCGGTGGTCCGTGATCATCGGCCC
GTAAATTATCGGAAGTCTGTGGCCTGTGGGTATTGTATAATTGATGTGTATTACGCGTGTACA-TTGTGTGCATCATTGT
CTTTCTTCATTTGCATCGTTTGTTCGTTTGTACGATGTATTCAGATTCAAAT-AAAATGTTTGCTTGATTGATTCAGTGA
AATAATGCCCTCTGCCAACGTCGATGAACACACTACGACAGAGAGAATTGGAGTTGTATTTTCCGATTATTTTCGGCTGC
GTACACGGTACAGCGGGTACAGGAAACTTGAGGCTGGGATTTGCTTTCTGGCAAAAGAGTTTACTTGGTGCTCTGGATAT
TCTACAGTATCTCCGTAGGCCGTAGCTAGCTAGCTAATGGATTAAGCATAACAACAAATCAAGCTAGCTCCACATGGATG
GACGTGGACCACGCCATCCACTCGTCAACTCTTCAAGCTTGTCTCACACTCCTTGTACACTAACTTTCCAGCCTTTTGGT
CTTTTTTTTTTGCGGAGAAGCCTTTTGGTCATTATTATCCGGTAAATTTTGTTAAGGCCAGTTGAGT----AGTAAAAAG
CAGACAGTTACTTAAA--ATAATTTTACGAGACGAGAACCAGATGTACGATAATTTCAGACAGCTAATAACCACCAATAT
TTT--TTTTTTGCTCGAAATCGT----------------CTTGTATACAGTTACACACCACCTTTCTTTGCTCGT-----
-----------CCA--------------AGTTCCCAACCGAAAGACGAGGAAGCGATCGGAATACACCGTACACCAAAGC
TCGAAGAAACCTAGCTGGTTAGCTAGCCAGCTAGCTTTGGCATCTCCATCGCTTTCTGTTCCTTGCTCTTTCTTCAAAGA
ATCACCACGGGCCAGTATAACACCCGAAACAACGACGTAATCAAACCTGTACATGCACGCCAATGCGCGCGCACGCGCA-
-----------CACGTAGGGCGACCAGAGACCGAACAAGGGGGCAGGGGCACGCGCGCGCGCCGCCATGCAGCCGGCGCC
GACCGCCCGGACCGCCGGCTGGCTCCACCGCCCGCTCCCGAGAGAGCGGCCGCACCTGACCCGCTGCACCAAGATCCTCT
GCTCGGCGTTCCTCACCCTGCTCCTCGTCGCCGGCGTGCTCCTCTTCGTCGCCTACCTCGCCGTGCGCCCGCACCGGCCG
CGCTTCCACGTCACCGCCTTCTCCGCCGCCAGCGTCCAGCAGGCCGG---------CGCCGGCGCGGTCCTCCTCTCCGG
GCAGCTCTCCATCCGCAACCCGAACCGGGACGTGGCCTTCTTCTACGACCGGCTCTACATGTCCGTGCTCTACCGCCAGT
ACGGCGCCGTCGTCAAGGACCACGACCTGGCCGGCGGGGCGCCCATGTACCAGCCGCCCAAGACCACGACGCCCCTCGCG
TTCGAGGGCGTCGCCGTGCCGGCGGGCCCCGCCACGGCCGACATGGCCAGGGCGGCCGCGGAGGCCGGAGGTGGCGCGGT
GGAGTTCACGGTGAAGGTCCGGTCGAGGATCCGGGCCAAGGTGGCCGTCTGGGGCTTCCACTGGCACCCGCTCCACGTGG
ACTGCGACGTGGCCGTGGGCCCCGACGGGCAGCTGCTGCCGGAGGCCCGGCAGAAGCGCTGCGACATAGACTTCTTGTAG
GTGTAATCCGCCTGCCTTTCACATAAAAAGACCAAATGAGTACATACCAGCAACAACTAGCGGCAA---CATTCCAATGT
AATCCTACAATACAGAGCAAGTAATTAACATCATATAG--------------------TATAGGTTAATTA------TAA
GACAAACCAGATCCTTGATTGTGGGGCCCATCACCTGTTGCTTCTCTGTATAATCCCATTG-CTCCTCCATGACTTTGGG
CTGTGATAAAAGCCATGCTCTTCTCCTCATTGATGGATGAGTTCTGAATAAGAATAAAGAGAGCAAATCTGCCAACGCCG
ACTCCCCGTTCATCCTTCCTGCCTTGTCAAAGAAGGAAGGGGCAGCGTGGGGATCGAAACCAGCAGCAGCCAGTAG----
----------------CCTCTAGCTCATTCCTACGATGCAGAGTATACGTAGTTAACATCAT---ATCAT----------
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-----------ACATTCATACTCTTACAAAACAACATATTCTAATTAACACGAAGTAAATACTTGCGTGCATACAAATAC
TGGGTTAGCTTAATGTTTTTGTAAGTTTTTTTTATATGTTTGTTTCTAGTTGGTTTCAGCTACTCTGGATTGTCCATAGT
TTTTGAAAACCCTAAGTTTTGCCCCTCTTTCATTTGGTGCCCAACGGAAATCCCATTCTGCCAATTTTTGTTAGCGCCCA
TGGACCATCACATTCACGTAGGTTATAGGTTCCTTTTCTGTTTAGCAGCACCTCACGAGTGAGACCCAGTTGGCACTGTC
CCGTAGCCGAGGGACGTAGGTGTCCAACGGTCAACGGACATGAACGTGACAGTGGGTGCTGACCGGAAAAAAACATGTCA
AATGGGGATATTCGTAGGGACACCGAAGGAAGAGGGGCAAACTAAGAGTTTCCAAAAACTAGGCATAATCCTGAGTAGCT
GGAAGCAACTAGGGACAAAAGCACACACAGACACATTGTTAAGATGCATGTATGAACAA-GGTGGGGCTAAAAGAAGTGA
TGAACTTAATA----TACCTTCGTAGCAATGGCGCCAAGAGGAAGTGGGTTGGGAACCACAACCTGAATATTTGGATCAT
CTCAGACGCGTGCCTCGCAATAACATGCCCAACCTACATA--TATATAGAAACCAATAAACAATACTATCGTCTTTGAAA
ACTAACAACCTCAGTAATCCAAAACGAACGAACAAACAAGCATATGTATGTACCTCATGTGCGATGACGGCGGCAATCTC
AGCATCCGTGCTGAAATGATCAAGTAATCTCGTGAAGACTATAATCTTACCACCACCGTCAAAGCAATGTGCTTTCTTGA
CGTTGTGTTCGGCAACTATCACCTCCCAATTGAGCTCGTCGATCCAATCCAGACACGTCGC
>SNPs
-----------S--------S------------------------------------------------------S----
---S-----------------------------------S--------------S----------S-------S------
---------------------------------------------------------------S----------------
-------------------------------S-------------------------------------------S---S
-----SS----------S-------------S------------------------------------------------
-----------------------------------------------------------------------SS-------
--------------------------------------------------------S--S----S---------------
-----------------------------------------S--------------------------------------
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----S-----------SS-----S-S-S--------------S-S--S--------------------------------
-------S----SS-SS-SSSS-SSSSSSSSSSSSSSSS-----------------------------------------
--------------SSSSSSSSSSSSSS------------------SSS---S---------------------------
---------------------------------------------------------------------S----------
----------S---------------------------------------------------------------------
--------------------S------------S----------------------------------------------
-S------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
------------SS---------------------------------------------------------------S--
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---------------S---------------------------------------------------------------S
-----------------------------------------------------------------S--------------
--------------S------------------------------S--------S-S-----------------------
---------------------------S-----------------------------------S----------S-S---
---SSS------------------S---S------S------------------------------SSS-----------
-------------------------------------S-SSSS--SS-S-S-----------------------------
---------------------------------------------S----------------------------------
--------------S-------------SSS------------S------------------------------------
-------S------------S-----------------------------------------------------------
--------------------------------------------S--------S-------------S--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------S-----S----------------------------S------
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--------------------------------------------------S--------S--------------------
----------------------------------------------S---------------------------------
--------S-----S---------------------S---SS--------------------------S-----------
-------------------------S-------------S--S------------------------S--S---------
----------------S-----------------S------S-----------SS---S-----------S---------
----S---------------------------------------------------S----
>forward_352
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-------------GCCAGCCTCGATGAACACT------------------------------------------------
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>reverse_2095
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--------------TTGCTCTTCTCCTCCACGATG---------------------------------------------
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