>input_sequence_72768
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---ATGGAGAGGAGCAAGGGCCGCCTCTCGCTGCTGCTCCTCGCGGTCGTGCTGGCGTCCCTCGTCGCCGGCTCGTCGGC
GGGCATCTACCACATCGTCGGCGCCGGCAAGGGCTGGACGATGGCCCCCAACAAGACCTACTACGGGGACTGGGCCCGCA
CCCGGAACATCAGCGTGGGCGACAAGCTCAGTGAGTCGA----TCTATCATCAATTCCTATTTATTTTC-CCC----CTT
CTTCTCCGGCTCCGGCGGGCGCCATTCGA---TCCTTGACGCCGGCCGTCACATCACATGCGTGCAGTGTTCCTGTACCG
GAGCGGCGTGTACAACATCGTGGAGGTGCCGAGCCGGGACCTGTTCGACGGCTGCAGCATGCGCAACATCACCAACCGCT
ACCAGAACGGGCCCACCATCATCGAGCTCATCCCGCCCGCCGGTCCGCGCTACTACTTCTGCGGCGTCGGCAAGCACTGC
GAGGAGGGCCAGAAGCTCAAGATCTACGTCGCTCCCTTCGCGCCCTCGCGCACGCAGAACGACGACCCGGCCGAAGAGGA
CGACGTCTAT---GACGACATGTCCGGCGGCTCGCCCGCCCCCGCCGCCATGCCGCTCCTCGCCCTCGCCGCCTGCTTGC
TGCCGCTTCCGCTCCTGCTGCTGATGTAA---------------------------------------------------
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>chr1B_1_TraesCS1B01G440000
GACCTTTCCATTAAGAGAGCGTATCATCAAGGGGTTACAAATACAATAAGCACACACCTAGACTCTACATAACTAGAATG
CACACACACACACACACACATCGGCAAAGAGCAAAGTCATATACAAGACCGGAGCTATGGCCCAGATAGAAGAAAAAGAC
GACCCCACCCCCCAAGGGATCAAGATAGTGATTGATGAAATACAACGGCGACTACAACATCAAGTCAATTCTTGATAACA
TAAGGGCTATGATAAAGGTTCTCAAAAAACAATGACTTTAGGAAGGAAGCAGGGTGCAACTGTCGCCGTCACTAGATCCA
ACCAACCACCTAAGACCAGATTGTGTGCTTTTGCCCTCAAGATCTAGTCCGAGCAAATCTCAAGCAAAGCATTCAACAAG
GTAACCAACTAGGGTCAGGCGTGGAATTTTCATCCCATGCTCAAGATCAAT----------------------TCAGAGT
CATCATGTGTTGTCGTCTCCACTTTCCGTGATCCAGCAGCTACATATGTGCATGGTCAGCTCATGAGATGACACATGAGT
GATGATCATGCACGCACAAGCAGGCAGTGGTTGTACAAATTCGTGTTGTTTACAGTTGAACTAATTGTGTGGTCAGCCAA
AGGACTGCACATCTATAAATGCACTATGATCAGGGATGATCCGTACGTTGGCTACAAAAAACTCACCGGCGACCATCACA
CACTTGCCAATATTAGAGAAGGGCTAGCCAGAGGCAGGAACCAAACCAAGAGCAAAAAATAGGCAAGGTCATCCATGGAC
TCCCTCAAGTCCTGCTCCATCGATCACATGCATGCATGCATGCATGCACACAGGGGCTAGCTAGATCT---CTGGCTAGC
TACCACCATCCCAAACTCTTCTCTTCCACACACGCATGTCCCCCCAAGGTGAGGAAAAAGGAAGAACGACGTGCGTACGA
ACGAGTCGAATCG------------------TCGATCGAGAAACCAAGATCAGGCCGGTCGGCGGATCGATCTCGTTGAA
CAAATGGAGAGGAGCAAGGGCCGCCTCTCGCTGCTGCTCCTCGCGGTCGTGCTGGCGTCCCTCGTCGCCGGCTCGTCGGC
GGGCATCTACCACATCGTCGGCGCCGGCAAGGGCTGGACGATGGCCCCCAACAAGACCTACTACGGGGACTGGGCCCGCA
CCCGGAACATCAGCGTGGGCGACAAGCTCAGTGAGTCGA----TCTATCATCAATTCCTATTTATTTTC-CCC----CTT
CTTCTCCGGCTCCGGCGGGCGCCATTCGA---TCCTTGACGCCGGCCGTCACATCACATGCGTGCAGTGTTCCTGTACCG
GAGCGGCGTGTACAACATCGTGGAGGTGCCGAGCCGGGACCTGTTCGACGGCTGCAGCATGCGCAACATCACCAACCGCT
ACCAGAACGGGCCCACCATCATCGAGCTCATCCCGCCCGCCGGTCCGCGCTACTACTTCTGCGGCGTCGGCAAGCACTGC
GAGGAGGGCCAGAAGCTCAAGATCTACGTCGCTCCCTTCGCGCCCTCGCGCACGCAGAACGACGACCCGGCCGAAGAGGA
CGACGTCTAT---GACGACATGTCCGGCGGCTCGCCCGCCCCCGCCGCCATGCCGCTCCTCGCCCTCGCCGCCTGCTTGC
TGCCGCTTCCGCTCCTGCTGCTGATGTAAACTTGATCCATCAACGTCAACGACCTGTCCATCGTAC--TCCTATATGTGT
GCATGCATGCAAGCTACGGTTTTTTTTCATTTTCATCAACAAAAGAATTTTTTAGAGGAAAAGGCAGATGCCCCGATTCC
ATTTCATAGAAATGAAACCCACAGGAAAAGGCAGAAGCCCCGATTCAATTTCACTTTTTTCCTTCTTCCTTCCCTCTTGG
CCGGAGCTTGCCGGAGAAGAACTAGTCCCACCATCTAACATAGGGTGAAGTAATGGCCCTATTATCTATCTTATGGGTGA
GGTTGGAGAGGATTGCCGGAGGTTTTCATGGGTGGTGCCGGACTTAGAAGGATGGCTGGGGCGGTGACCAACAATGACGG
TGGGGGAAGGTCGAGGGGAGGGCGGGGCAGCAAGGCGGTGCATGGTAACGCCCACCCGCCACGGGTGGTGCAGGCCCGCC
GTTAAGGTGGGGTGGGCTGGGGTTGTTCTGATCGAGAGGAGAAAGAAGGAATGAAGGAAAAAGATGAACAGTGACATGAT
CTATTTTGGGCTATGATGACCCACAAGTATAGGGGATCAATCGTAGTCCTTTCAATAAGTAAGAGTGTCGAACCCGACGA
GGAGCAGAAGAAAATGACAAATGGTTTTCAGCAAGGTGCTTTCTGCAGGCACTGAAATTGTCGATAACAGATAGTTTGAT
AGTAAGATAATTTGTAATAAGTAATAAGTAGCAATAGTAACAATAGGTGCAGCAAGGTAGCCCAATCTTTTTGTAGAAAA
GTACAGGCCAAAACGGTCTCTGATAATAAGTAAAAGGTTCTCAAGGACACACGGGAATTTCATCTAGTCACTTCCATCAT
GTTTGTTTTATTCGCGTTTGCTAATTTGATAATTTGATATGTGGATGGACCGATGCTTGGGTGTTGTTCTTACTTGAACA
AGCCTCCCACTTATGATTAACCCCCCTCACAAGTATCCGTAACTACAAAAGAAGAATTAAGATAAAATCTA
>chr1A_197
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------------------------------------GAAATACAACGACCACCATCGGCATCAATCATCTCTTGACAACA
CAAGGGCTATGATAAATGTTCTAAAAAAACAACGACTTCAGGAAGGGAGTGGGGTGCAAATGCTGCCACCGTTGGATCCA
ACCAACCACTGAAGACCAGATTGTGTGCTTTCACCCTGAATATTTAGTCCGGGCAAATCTCAAGCAAAGCATTCAACAAG
GTAACCAACTAGGGTCAGACATGGAATTTTCATCCCGAAGCTCAAGACTGG-TACTCGAGAAACACCATCAAATCAGAGT
CATCATGTGTTGTCGTCTCCACTTTCCGTGATCCAGC------------------------------ATGCCACACGAGT
GATGATCATGCACGCACAAGCAGCCAGTGGTCGTACAAATTCGTGTTGTTTACAGTTGAGCTAATTGTGTGGCCAGCCAA
ACGACCGCACATCTATAAAAGCACTACGATCAGGGATAATCCGTACATTGGCTAC---AAACTCACCGGCGACCATCACA
CACTTGCCAATATTAGGGAAGAGCTAGCCAGAGGCAGGAACCAAACCAAGAGCAAAAAATAGGCAAGGTCGTCCATTGAC
TCCCTCAAGTCCTGCTCCATCGATCACATGCATGCATGCA----------CATGGGGGCGCTAGATCTCCTCTGGCTAGC
TACCACCATCCCAAACTCTTCTCTTCCACACGCGTACGTACAAGGG----GAGGAAAAAGGAAGGAGGACGCACGTACGA
ACGAGTCGA-TTATCTATAGGAG-TCGTCCATCGATCGAGAAACCAAGATCAAGCCGGCCGGCGGATCGATCTCGTTGAA
TAAATGGAGAGGAGCAAAGGCTGCCTCTCCCTGCTGCTCCTCGCGGCCGTGGTGGCGTCCCTCGTCGCCGGCTCGTCGGC
GGGCATCTACCACATCGTCGGCGCCGGCAAGGGCTGGCAGATGGCCCCCAACCGGACCTACTACGGGGAATGGGCCCGCA
CCCGGAACATCAGCGTGGGCGACAAGCTCAGTGAGTC----TAGCTATCATCAATTCCTATATATATTTTCCC----CTT
CTTCTCCGGCTCCGGCGGGCGCCAATCGA---TCCTTGACGCCGGCCGTCGCATCGCATGCGCGCAGTGTTCCTGTACCG
GAGCGGGGTGTACAACATCGTGGAGGTGCCGAGCCGGGACCTGTTCGACGGGTGCAGCATGCGCAACATCACCAACCGGT
ACCAGAACGGGCCCACCATCATCGAGCTCATCCCGCCCGCCGGCCCGCGCTACTACTTCTGCGGCGTCGGCAAGCACTGC
GAGGAGGGCCAGAAGCTCAAGATCTACGTCGCCCCCTTCGCGCCCTCGCGCACGCAGAACGACGACCAGGCCGAAGAGCC
CGACGACGACGGCGACGTCATCTC---CGGCTCGCCCGCCCCCGCCGCAGTGCCGCTGCTCGCCCTCGCCGCCTGCTTGC
TGGCGCTTTCGCTCCTGCTGCTGATGTAAACTTGATCCATCAACGTCAACGATCTG------------------------
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>chr1D_218
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----------------------------------------------------------CATCAATCATCTCTTGACAACA
CAAGGGCTATGATAAATGTTCTAAAAAAG-------TTCATGAAGGGAGCGGGGTGCAAATGCTGCCGCCGCTGGATCAA
ACCAACCACTGAAGACCAAAGTGTGTGCTTTCACCCTGAATATTTAGTCAGAGCAAATCTCAAGCAAAGCATTCAACAAG
GTAACCAACTAGGGCCAGACATGGAATTTTCATCCCGGAGCTCAAGACTGGGTACTCGAGAAACACAATCAAATCAGAGT
CATCATGTGTTGTCGTCTCCACTTTCCGTGATCCAGC------------------------------ATGCCACACGAGT
GATGATCATGCACGCACAAGCAGCCAGTGGTCGTACAAATTCATGTTCTTTACAGTTGAGCTAATTGTGTGGCCAGCCAA
AAGACCGCACATCTATAAAAGCACTACGATCAGGGATAATCCGTACATTGGCTAC---AAACTCACCGGCGACCATCACA
CACTTGCCAATATTAGGGAAGAGCTAGCCAGAGGCAGGAACCAAACCAAGAGCAAAAAATAGGCAAGGTCCTCCATGGAC
TCCCTCAAGTCCTGCTCCATCGATCACATGCATGCATGCATGCA------CATGGGGGCGCTAGATCTCCTCTGGCTTGC
TACCACGATCCCAAACTCTTCTCTTCCACACGCGTACGTAGAAGGG----GAGGAAAAAGGAAGGACGACGCACGTACGA
ACGAGTCGAATTATCTATAGGGAATCGTCCATCGATCGAGAAACCAAGATCAGGCCGGCCGCC-GATCGATCTCGTTGAA
TAAATGGAGAGGAGCAAGGGCTGCCTCTCGCTGCTGCTCCTCGCGGCCGTGGTGGCGTCCCTCGTCGCCGGCTCGTCGGC
GGGCATCTACCACATCGTCGGCGCCGGCAAGGGCTGGCAGATGGCCCCCAACAAGACCTACTACGGGGACTGGGCCCGCA
CCCGGAACATCAGCGTGGGCGACAAGCTCAGTGAGTCGATCTATCTATCATCAATTCCTATTTATTTTTTTCCCCTTCTT
CTTCTCCGGCTCCGGCGGGCGCCATCGATGGGTCCTTGACGCCGGCCGTCGCATCGCATGCGCGCAGTGTTCCTGTACCG
GAGCGGGGTGTACAACATCGTGGAGGTGCCGAGCCGGGAGCTGTTCGACGGGTGCAGCATGCGCAACATCACCAACCGGT
ACCAGAACGGGCCTACCATCATCGAGCTCATCCCGCCCGCCGGCCCGCGCTACTACTTCTGCGGCGTCGGCAAGCACTGC
GAGGAGGGCCAGAAGCTCAAGATCTACGTCGCCCCCTTCGCGCCCTCCCGCACGCAGAATGACGACCAGGCCGAAGACGC
CGACGACGACGGCGACGTCATGTCCGGCGGCTCGCCCGCCCCCGCCGCCGTGCCGCTGCTCGCCCTCGCCGCCTGCTTGC
TGCCGCTTCCGCT---GCTGCTGATGTAAACTTGATCCATCAACGTCAACGATCTGTCAATCGGTCAATCGTATATGTGT
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-S--S-SSSSSSSS-S---SS------S----
S---------------S-----S---------S-----S-------S---S--------S--SS----S-S--S------
---------SS--------------------SS----S--S--S------------------------------------
------------------S-S---------------SSSSSSS-SSS-SSS-----------------------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S----
-----------------------S-------S---------------------------S------------S-------
-S---S-------------S------S----------S--------S--------SSS----------------------
----------------S----S------------------------------------------------S---------
--------------------------------------------SSSSSS--S---SSS---------------------
-------------------------------S--S-S--S-SSSSSSSSS--------------S------SS-------
-----------SS---------------------------------------------S---------------------
S--------------------S------------------------S----S----------------------------
-------------------------------------SS-----------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------S----S------S-----------------
------S--------------------------------------------S--------------------------S-
-------------------------------------------S------------------------------------
--------------------------------S----------------------------------S-----------S
-----S-S-S-------S-------------------------------S-------S----------------------
----------------------------------------------------S-----S----SS-----S---------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_525
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-------------------------CCGTGATCCAGCAGCTACAT-----------------------------------
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>reverse_2176
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---------------GCTGGGGTTGTTCTGATCGA---------------------------------------------
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