>input_sequence_72743
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---------------------------------------------------GCATAAAAAGGTGGGAGAAGGTCACAC--
-------CACTGAGTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTG
CTCTCAT------------CTTCTCCTCCGATCCAAATTCCAAACAAGCAAAAAGGCG-----GAGCAAGACCAAAGCGG
CCAGTCTCTTGCAAGCCTCGCCGCCGTCGCCGCCGGCTGATCAGCTCCGGTGCGTGCGTGCGTGCGAGCGGGATGGGCAG
CGGGAGGCCGGCTGCGTGGCGGACGTGCGCGGCGGCGGCGGTGGCTGCGTGCGCCGTGCCGGTGGCCTTGTCACTGGTGC
TGCTCTGGCTGCCCCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGGCGAGGAGGAGGATGATGCAGATGTGC
GGCGGCAGCACAAGAGGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGA
GGACCAGCTGGAGCTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGGGAAGTGCAGCGGTTGACGGT
CGCG-TTTCCTTGTTCTTTTTGGAGGTCTGTAGGATGGCTAATGT--------------TTGGAAGAGGCCGAGACGATT
TTGGTCGTGTTTTGTGCTTTGTGAA-------------------------------------------------------
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>chr5A_1_TraesCS5A01G112000
TGCAATCGGCAAGGCAAAAGTTGCAACCTGCAAATGGCGCAGCTGGAAATAATGC-TTTTTTTGCTGGAAGGTATGGCGT
GCTATCGATCTTAGATGTCCTTTTTTGCTGGATGTAGTGTTTTTTT-TGTGTTGGAAGCATCAATTTGTTTTGCTAGAAC
CAGCTTCCTCAGAGCTGCGAGGATCGACCAACAGACTTTGTTTTGTTGGAAGCAGTGTTTCTTTTTGCTGGAAGCGGCAG
TCTGGATTGCTACTGCCGATGCAGCTCGACGTGCGACGAAGCTTCATATTTGTGACGGAGACGAGAGAAAAGCTACGGCT
GTGAAAAAGCTTCATCCGGCGGGAGGAAAAGCTTCAAGTGGCATGAGGAAAAAGCTTCCACCATAAGAAAAAAGCTTCAA
TGATGGAAAAAGCTTCAATGGCTGTGGAACCGGCTTTTCTCCCTCAGTTGCAACGGGGGCTCGGCGAGCAAT-AA-CGCT
GATTTAATTTGCTGGAACCTAGTGTTTTTTTGTTGGAACCAAATTTCTTCATGAGGTGCGGCGGCGAGGCATTTCTTTGA
ATTTTT-GCTGCATTTGTCTCTTT--TGCTGAAACCTTTAACTAATTTTGCTACAATGAGCTTTTGATTTTGTTGGAACC
GCCTGAAGCGGAACTGAGACCAGATTTTTTTAGCAATTGATTTTATTGCAACAATCCAATCAGCGAGCGGGCCCGGCGAG
TAGCAACGCGAGCCTGTGAGCGACCGGCGAGCCGGCCAGCGGCAGCCACAGAGCTTCAAGCGAAAGGCCATGGGAG-GAC
GAAGAGGAAGCATGAGGCATAGAGGAACTGTTGTGTGGAAGGAGACACGCGCATGGAGGGCGGGATGGAATCGTGTGGTC
TGGGACGCGCGCATCGTGCCGCTATGGGCCGACCGGCCGAAATTTCAGCCGATGCGCCGGCGCCTAACAGTCGCCTTCCG
ATCCTGTCCA---AGAAGTAAGAGAAAGGCGATCGATGACTCCTAATAGCAGCATAAAAAGGTGGGAGAAGGTCACAC--
-------CACTGAGTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTG
CTCTCAT------------CTTCTCCTCCGATCCAAATTCCAAACAAGCAAAAAGGCG-----GAGCAAGACCAAAGCGG
CCAGTCTCTTGCAAGCCTCGCCGCCGTCGCCGCCGGCTGATCAGCTCCGGTGCGTGCGTGCGTGCGAGCGGGATGGGCAG
CGGGAGGCCGGCTGCGTGGCGGACGTGCGCGGCGGCGGCGGTGGCTGCGTGCGCCGTGCCGGTGGCCTTGTCACTGGTGC
TGCTCTGGCTGCCCCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGGCGAGGAGGAGGATGATGCAGATGTGC
GGCGGCAGCACAAGAGGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGA
GGACCAGCTGGAGCTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGGGAAGTGCAGCGGTTGACGGT
CGCG-TTTCCTTGTTCTTTTTGGAGGTCTGTAGGATGGCTAATGT--------------TTGGAAGAGGCCGAGACGATT
TTGGTCGTGTTTTGTGCTTTGTGAAATGAAACATCGAGAAATTAGAGACTACTAC--------TTT-CTTTTTGCGAAAT
TAGAGGAATTAGAGACTACTGCTAGCATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTAAAC
TTA-------------------------TGTTCTTTCTTTTGCTGAATTTTGGGTATGCTGTGTTCACTTTCTAATCTGA
CTTG---------CTTTGTTAATACCCGCTCGCTCGTTGTGTCT--TGCATCAAACGACTAGCCGCATCGCTTCTCTCCA
AGTTGAAGCTACACGGAGACATTTCTTTTGTAACAGCTGATCCAGACGCG-TTAAAGTGAATTATCTTGAAATTTCCCTT
TAAAACAATT-TTTTTTCCTGAAACAGCTCACGAGGACGAGCTTAAACATACGCTTCTTGGCACATTGCTTGAAGCAAGA
GCAAGCAAATCGCAGGCAGCATCTATC-----------------------------------------------------
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-------------------------------------------CCATCCTGTAATTCCGGATAACGCAAGCCTTGCGTGG
TTTGCGCGCTGGGTTTAGATTCTACCGGCGCCAGGTTTCA-----TCATCTCCCCGACGACGCGCCACGCGTCT------
------------------------CAGCTCGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCACTCGGATAGAAC
CAGGGCACGTGAATGAACATTCCGATGGATGCGCTCGGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATATC
AGGGTCGTATTTGACCAACTTTGGT-ATAATCTAACGAATCTAAAATATCACAAAGATGCGCGTACATTTTCGGTTGCTC
CGTTAACCTTGAACCCTTTATTTATCTCTACATCATGTCAAAGTCATACTAT-----TATATCACAAAGACGACAAATCA
GGATTCAACTAAGCTG-------TTTTTTCTTGTTTCTAAAACAGGCGCG-AAATATGTCCATCTGATTTTGTAAGCACC
AATTGCTTTCTCTCTCTCTCTCTCTCAATTTAGTGTCTAGTTGATTACAGATTTGAATTCAATCCAAGGACGAGGAAGGA
AGAACAGAGAAACAACA
>chr5B_1
TGCAACCGGCAAGGCAAAAATTGCAACCTGCAAATGGCGGAGCTGGAAATAATGCG--TTTTTGCTGGAAGGTATGGCGT
GCTATCAATCTTAGATGTCCTTTTTTGTTGGATGCAGTTTTTTTCTGTGTGTTGGAAGCATCAATTTGTTTTGCTGGAAC
CAGCTTCTTCAGAGCTGCGAGGATCGACCAACA--CTTTTTTTTGCTGGAAGCAGTGTTTCTTTTTGTTGGAAGCGTCAG
TCTGAATTGCTACTGCCGATGCAGCTCGACGTGCAATGAAGCTTCATATTTGTGATGGAGACAAGAGAAAAGCTAGGGCT
GTGGAAAAGCTTCATCTGGCGGGAGGAAAAGCTTCAAGTGGCATGAGGGAAAAGCTTCCACCATAGGAAAAAAGCTTCAA
TGGTGGAAAAAGCTTCAATGGCTGTGGAACCGGCTTTTCTCCCTCAGTTGCAACGAGGGCTCGGCGGGCAATAAA-CGCT
GATTTAATTTGCTAGAACCTAGTGTATTTTTGTTGGAACCAAATTACTTCATATGGTGCGGTGGCGAGGCACTTCTTTGA
TTTTTT-GCTGCATTTGTGT-TTT--TGCTGGAACCATTGACTGATTTTGCTACAATGAGCTTTTGATTTTGCTGGAACC
GCCTGAAGCGGAACTGGGACCAGA-TTTCTTAGCAATTAATTTTGTTGCAACAATCCAATCGGCGAGCGGGCCCAGTGAG
TAGCGACGCGAGCCGGTGAGGGACCGGCGAGCCGGCCAGCGGCGGCCACAGAGCTTCAAGTGGGAGGCCATGGGAGAGAC
GAAGTGGAAGCATGA-----------------------------------------------------------------
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>chr5B_1
TGCAACCGGCAAGGCAAAAATTGCAACGTGCAAATGGCGGAGCTGGAAATAATGTG--TTTTTGCTGGAAGGTATGGCGT
GCTATCAATCTTAGATGTCCTTTTTTGTTGGATGCAGTTTTTTTCTGTGTGTTGGAAACATCAATTTGTTTTGCTGGAAC
CAGCTTCTTCAGAGCTGCGAGGATCGACCAACA--CTTTTTTTTGCTGGAAGCAGTGTTTCTTTTTGCTGGAAGCGTCAG
TCTGAATTGCTACTGCCGATGCAGCTCGACGTGCAATGAAGCTTCATATTTGTGATGGAGACAAGAGAAAAGCTTGGGCT
GTGGAAAAGCTTCATCTGGCGGGAGGAAAAGCTTCAAGTGGCATGAGGAAAAAGCTTCCACCATAGGAAAAAAGCTTCAA
TGGTGGAAAAAGCTTCAATGGCTGTGGAACCGGCTTTTCTCCCTCAGTTGCAACGGGGGCTCGGCGGGCAAT-AAACGCT
GATTTAATTTGCTAGAACCTAGTGTATTTTTGTTGGAACCAAATTACTTCATATGGTGCGGTGGCGAGGCACTTCTTTGA
TTTTTTTGCTGCATTTGTGT-TTT--TGCTGGAACCATTCACTGATTTTGCTACAATGAGCTTTTGATTTTGCTGGAACC
GCCTGAAGCGGAACTGGGACCAGA-TTTCTTAGCAATTAATTTTGTTGCAACAATCCAATCGGCGAGCGGGCCCAGTGAG
TAGCGACGCGAGCCGGTGAGCGACCGGCGAGCCGGCCAGCGGCGGCCACAGAGCTTCAAGTGGGAGGCCATGGGAGAGAC
GAAGTGGAAGCATGA-----------------------------------------------------------------
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>chr5D_1
TGCAACTGGCAAGGCAAAAGTTGCAACCTGCAAATGGCGGAGCTGGCAATAATGCTTTTTTTTGCTGGAAGGTATGGCGT
GCTATCGATCTCAGATGTCATTTTTTGCTGGATGCAGTGTTTTTT--TGTGTTGGAAGCATCAATTTGTTTTGCTGGAAC
CAGCTTCTTCAGAGCTGTGAGGATCGACCAACAGACTTTTTTTTGCTGGAAGCAGTGTTTCTTTTTGCTGGAAGCGTCAG
TCCGGATTGCTACTGCCGATGCAGCGCGACGTGCGACGAAGCTTCATATTTGTGACGGAGACGAGAGAAAAGCTACGGCT
GTGAAAAAGCTTCATCCGGCCGGAGGAAAAGCTTCAAGTGGCATGAGGAAGAAGCTTTCACCATAGGAAAAAAGCTTCAA
TGGTGGAAAAAGCTTCAATGGCTGTGGAACCGGCCTTTCTCCCTCAGTTGCAACGGGGGCTCGGCGAGCAAT-AA-CGCT
GATTTAATTTGCTGGAACCTAGTGTTTTTTTGTTGGAACCAAATTTCTTCATGAGGTGCGGCGGCGAGGCACTTCTTTAA
TTTTTT-GCTGCATTTGTGT-TTTTTTGCTGGAACCATTAACTGATTTTGCTACAATGAGCTTTTGATTTTGCTGGAACC
GCCTGAAGCGGAACTAGGACCAGA-TTTTTTAGCAATTGATTTTATTGCAACAATCCAATCGGCGAGC------------
--------------------------------CGGCCAGCGGCAGCCACAGAGCTTCAAGCGGGAGGCCATGGGAG-GAC
GAAGAGGAAGCC--------------------------------------------------GGGTGGGATCGTGTGGTC
TGGGACGCGCGCATCGTGCGACTATGGGCTGACCGGCCGAAATTTCGGCCGGTGCGCCGGCGCCTAGCAGTCGCCTTCC-
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>chr5B_948
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---------------------------------------------------------------------------TTCCG
ATCCTGTCCA---AGAAGTAAGAGAAAGGCGATCGATGACTCCCAGTAGCAGCATAAAAAGGTGGGAGAAGGTCA--C--
-------CACTGAGTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTG
CTCTCACGGATACACATCCCTTCTCCTCCCATCCAAATTCCAAACAAGCAAAAAGGCG-----GAGCAAGACCAAAGCGG
CCAGTCTCTTGCAACCC---------TCGCCGCCGGCTGATCAGCTCCGGTGCGTGCGTGCG--------GGATGGGCAG
CGGGAGGCCGGCTGCGTGGCGGACGTGCGCGGCGGTGGCGGTGGCTGCGTGCGCCTTGCCGGTGGCCTTGTCACTGGTGC
TGCTCTGGCTGCCCCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGACGAGGAGGAGGATGATGCAGATGTGC
GGCGGCAGCACAAGAAGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGA
GGACCAGCTGGAGCTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGACAAGTGCAGCGGTTGACGGT
CGCGCTTTCCTTGTTCTTTTTGGAGGTCTGTAGGATGGCTAATGTGATACAGTACGCGTTTGGAAGAGGCCGAGACGATT
TTGGTCGTGTTTTGTGCTTGGTGAAATGAAACATCGAGAAATTAGAGACTACTGTACTACTTTTTT-GTTTTTGCGA---
------AATTAGAGACTACTGCTAGTATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTTAAC
TCA-------------------------TGTTCTTTCTTTTGCTGAAATCTGGGTATGCTGTTG--ACTTTCTAATCTGA
CTTGTGCCACTTGCTTTGTTAAAATCCGCTCGCTTGTTGTGTCTTGTGCATCAAACGACTAGCCGCATCGCTTCTCTCCA
AGTTGAAGCTACACGGAGGCATTTCTTTTGTAACAGCTGATCCAGATGCGATTAAAGTGAATTATCTTGAAATTTCCCTT
TAAAACATTTGTTTTCCCCTGAAACAGCTCATGAGGACGAGCTTAAACATACGCTTCTTGGCACATTGCTTCAAGCAAGA
GCAAGCAAATCGCAGGCAGCATCCATC-----------------------------------------------------
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-------------------------------------------CCATCCTGTAATTCCGGATAACGCAAGCCTTCCGTGG
TTTGCGCGCTGGGTTTAGATTCTACCGGTGCCAGGTTTCATCATCTCATCTCCCCGACGACGTGCCACGCGTCTCGTGAG
GGAGAGTGCCGACATGACTGGAATCAACTCGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCGCTCGGATAGAAC
CAGGGCACGTGAATGAACGTTCCGATGGATGCGCTCGGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATATC
AGGATCGTAT--GACCAACTTTAGTACTAACCTAACGAATCTAAAATACCACAAAGATGCACGTACATCTTCGGTTGCTC
CGTTAACCTTGAACCCTTTATTTATCTCTACATCGTGTCAAAGTCATACACTATTACTATATCACAAAGACGACAAATCA
GGATTCAACTAAGCTGGACTATGTTTTTTCTTGTTTCTAATACGGACGCAAAAATATGTCCATCTGATTT----------
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>chr5D_948
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---------------------------------------------------------------------------TTCCG
ATCCTGTCCAAGAAGAAGTAAGAGAAAGGCGATCGATGACTCCTAGTAGCAGCATAAAAAGGTGGGAGGAATCACCACTG
AGTCGGACACCGACTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTG
CTCTCACGGATACA----CCTTCTCCTCCCATCCAAATTCCAAAGAAGCAAAAAGGCGGAGCAGAGCAAGACCAAAGCGG
CCAGTCTCTTGCAAGCCTCGCCGCCGTCGCCGCCGGCTGATCAGCTCCGGTGCGTGCG------------GGATGGGCAG
CGGGAGGCCGGCTGCGTGGCGGACGTGCGCGGCGGCGGCGGCGGCTGCGTGCGCCGTGCCGGTGGCCTTGTCACTGGTGC
TGCTCTGGCTGCCCCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGGCGAGGAGGAGGATGATGCAGATGTGC
GGCGGCAGCACAAGAGGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGA
GGATCAGCTGGAGCTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGAACAGTGCAGCGGCTGACGGT
CGCGTTTTCCTTGTTCTTTTTGGAGGTCTGTAGGATGGCTAATGTGATACAGTACGAGTTTGGGAGAGGCCGAGACGATT
TTGGTCGTGTTTTGTTCTTGGTGAAATGGAACATCGAGAAATTAGGGACTACTAC--------TTTTGTTTTTGCGAAAT
TAGAGGAATTAGAGACTGCTGCTAGTATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTAAAC
TTGTGTCCTTTCCTAAAAACTAAACTTGTGTTCTTTCTTTTGCTGAAATTTGGGTATGCTGTTG--ACTTTCTAATCTGA
CTTGTGCCACTTGCTTTGTTAAAGTCCGCTCGCTCGT---------TGCATCAAACGACTAGCCGCATCGCTTCTCTCGA
ACTTGAAGCTACACGGAGACATTTCTTTTGTAACAGCTGGTCCAGATGCGATTAAAGTGAATTATCTTGAAATTTCCCTT
TAGAACATTTGTTTTCCCCTGAAACAGCT--------CGAGCTTAACCATACGCTTCTTGGCACATTGCTTCAAGCAAGA
GCAAGCAAATCGCAGGCAGCATCTATCGGAACTCTAACCTAACATGGTGAAGGAAAGTCACCGTGCTATAGTGTTTAGTG
TAAAATGAAGAAGGAAAGTTAGGGTCTGTTAGTAGATAATTAGTCAGTTGTTTACTGTTGGTAATTATATTTACTGTAGA
TATAAATAATTTAAAATTAATTATGTTTCATCATCAATTTGTTTGTATGTAATTACTATAAATGTACACAGTAGATCATC
AATTTACAAATTAATTTAAGTCGTTTTAACCATAATCATATGAATAGAAAGAAGAAAAATAAGTATATTATAGTTTCTCT
AACTTTCCTTCACAATGTTAGAGGATTCGGTTCCGCATCTATTCCATCCTGTAATTCCGGATAACGCAAGCCTTCCGTGG
TTTGCGCGCTGGGTTTAGAGTCTACCGGTGCCAGGTTTCA-----TCATCTCCCCGACGACGTGCCACACGTCTCGTGAG
GGAGAGTGCCGACATGACTGGAATCAGCTTGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCACTCGGATAGAAC
CAGGGTACGTGAATGAAAATTCC-ATGGATGCGCTCAGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATACC
AGGGTCGTATTTGACAAACTTTGGTAATAACCTAACGAATCTAAAATATCACAAAAATGCACGTACATTTTCGGTTGCTC
CGTTAACCTTGAACCCTTTATTTATCTCTACATCATGTCAAAGTCATAC-------------CACAAAGACGACAAATCA
GGATTCAACTAAGCAGGACTATGTTTTTTCTTGTTTCTAAAATAGACGCAAT-ATATGTCCATCTGATTT----------
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>SNPs
-----S---------------------------------S----------------------------------------
----------------------------------S----------------------------------------S----
-------S-------------------------------S-----S------------------------------S---
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-----------------------------------------------------------------S--------------
--S-----------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
S-----------------S-S----------S----S------S----------------------------S-------
----------------S-------S------------------------------------S------------S-S---
----S---------S-----------------------------------------------SS----------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-----------
-------------------SS--------S----------------S----S--------------S-------------
---------------------------------------------S----------------------------------
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------S----------------------S--------------------------------------------------
--------------------------------------------------------------SSSSSSSS----------
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-----------------------------------------------------------SS-------------------
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-------------------S-----------------------------------------------S------------
-------------------------S------------------------------------------------------
-----------------------------------------------S--------------SSSS--------------
----------------------S-S-------------------------------------------------------
----------------------------------------------S---------------------------------
-------S-------SS--------------S---------------------------------------S--------
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--------------------------------------------------------------------------S-----
----------------------------S---------------------------------S-----------------
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------------------------------S-----------------------------S-------------------
-------------------------------------------------SS-----------------------------
---------------------------------------------S---S--------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_818
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------------------------------------------------------------------------------AC
GAAGAGGAAGCATGAGGC--------------------------------------------------------------
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>reverse_2097
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----------------TCCTGAAACAGCTCACGAGG--------------------------------------------
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