>input_sequence_72718
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---------------------------------------------ATGGCCATCGTCAAGAACATTGCATGCACATTGTT
CATTGCTGCCATTGTGGTGGCAGCCACATTGGTACCGGCGGCAAGCGCCGCCAGCGACAAATCCATTGAAGAGATGGATG
CATCCATCAAGAAGGCCTTTGACGCGGTCATCGCCGCCGCCCCAGCATCCAAAAGGTCTGCAGTAGAATCTTTCGTGCTC
AAGCAGAAAGTCGCTGCCACCGCCTCGCTCAATGAGGCCGCTGGAGATAAGAAGAAAGTTGATGAAATTGTCACTGCCTA
TAAGACGGCCTCCGATGCGGTCCTTGCCGCTAAACCCGCCGACAAATATGACGTATTTGACAAGACCTTCAGCGAGGCCG
GTCATCCTCCCACCGTGAAGGCCGTCGACGCATTGGAGAATTCCTTCAAGGAGGCCATTGGTGATGTCGTCGCTGCTGCC
CCAGCACCACAGCAGGACGAAATGAAAGCCCTCGTGTTCCAGCAGACCGTCGTCGCTGCCAACACGCTTGCCCAGTCTGC
AAAGGACAAGAAGCTATTTACTGCGGTTACCACCGCCTACAAGGTGGCTTCTGATGCGGTCCTTGCCGCTGCGCCCGCCG
ACAAGTATTCCGTAATGGAAAAAACCTTCGCGGAGGCTGCTGATGTCAAAGCAGCATGA---------------------
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>chr5D_1_TraesCS5D01G536600
TTCATCTCATTTGTGACTGCGTTGTCAATGTGTGTTGCAACAGCTCGTCGGCTCCCTCTG-AACCCTCCGACATGAAAAG
CTTGGTATAAAACTCAGTTGCCATTACCTGCATCTCATCATCGTCAGTGCACCTCGTCCCATTCCCTCTGATTAAAGCTC
AAACGGTGTTCTTT-TTTCCCA-TGAGAAGCTCGGTTTTGGAAATACCGGGGGTTTGGATCGTCTGCCTTGAGCCATTAT
TCAATCCTTGACCGCTGCCTACACATAACTTCCTCACACTCATAAACTTCCCACAGCTGCTCATCTGTGTCCTTTATCTA
TGCTTGATACCCCGTGGCAAGCGCCCGTTCTTTTGCATCTCAAAGTCATTCTCGCAGTTTTGCTATCTGCCTATGAATTG
ACCCCAAAACAGCTTGGCTCCACTACTGCATGTCCAGTGACATGCTCCTCCGGAAAGAGTATAAGCCTTGACACTAGTGA
GACACCATGTTGAAATAGACGATGTAGATCAGCAGAGCGTCTTGAGCCATGCTTATTATACTAGGAAGACATGGTAG-GT
TTTGCACGGGCATATGTGCTAGTAATTATAAAAATACTCCAGGATCGATCAATGGAACCGACCAACACTACATGCAGTTT
GCAAATTTTCAAACCAAGAGATCACAGGCTAGTAAGACATGCACCCAAAATCAATCGCAAAACCAGAAAGATTGGTGGCC
ACTTTTGGCTGTGCTCTTGAAAGAATGATTGGTGGCCAATTTCGGGTGTGCTCCTCAAAACAAGGGGCAAGCGGTGGCTC
ATACATCCAGACATCGGTTCATGCAACCAATTTTGCACCACCGTAGGACACCCGCAAAGCTCTCATGGCCTCACGCCCTC
TTTAGACACCATCTCCTATTTTAGTGC-ATGGCCACCTTCATAAACTTACACGGCGCAAACATCTCACCGGAAGCAATAC
CATCTTCTTGAATCATCCCTCAACCACTTGTTAGGTCAACTTACAATGGCCATCGTCAAGAACATTGCATGCACATTGTT
CATTGCTGCCATTGTGGTGGCAGCCACATTGGTACCGGCGGCAAGCGCCGCCAGCGACAAATCCATTGAAGAGATGGATG
CATCCATCAAGAAGGCCTTTGACGCGGTCATCGCCGCCGCCCCAGCATCCAAAAGGTCTGCAGTAGAATCTTTCGTGCTC
AAGCAGAAAGTCGCTGCCACCGCCTCGCTCAATGAGGCCGCTGGAGATAAGAAGAAAGTTGATGAAATTGTCACTGCCTA
TAAGACGGCCTCCGATGCGGTCCTTGCCGCTAAACCCGCCGACAAATATGACGTATTTGACAAGACCTTCAGCGAGGCCG
GTCATCCTCCCACCGTGAAGGCCGTCGACGCATTGGAGAATTCCTTCAAGGAGGCCATTGGTGATGTCGTCGCTGCTGCC
CCAGCACCACAGCAGGACGAAATGAAAGCCCTCGTGTTCCAGCAGACCGTCGTCGCTGCCAACACGCTTGCCCAGTCTGC
AAAGGACAAGAAGCTATTTACTGCGGTTACCACCGCCTACAAGGTGGCTTCTGATGCGGTCCTTGCCGCTGCGCCCGCCG
ACAAGTATTCCGTAATGGAAAAAACCTTCGCGGAGGCTGCTGATGTCAAAGCAGCATGAGTGGCACCTCG----TCTGGC
CTTCGATGCACACGACCACCGGCGGATTGATCACTTGATGTTATTGATTTTTTTTCCCATGCATGGAAACAGGCAATAGT
TCTTTTTGAAGTTTTCTCTTGTATTGGCGATTTTTAGCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTACAGTACATTTTAATATAT
ATTTACTTATTTCTGTGGTTGATGCATGTGATTTCTGATGGCATAAAAACTAC---------------------------
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------------------------------------------------------------TAC----TTGATACAAATTG
CTTAGACTATCATAACTACGTTTCGCCTCACAATGTAGCGTGCTATGATGTCGTCTTTGATCTTCCGGCACATTGACAGT
TTGACACTATCTTCTG-TGTGTGATCCCTATGTTTTGCCTCTGGCGTGTATCATTG--TTTTTTCAAGAACCAGCTTTAA
ACACTTTATTATTCAGGTGGTTACTATCGTACAATTTCAACCACGTACAATGGAATTACAACAACGGTACTGATATTAAC
GTCGAGCTTTAAAGCCTCCTTGCAGGCATGGGCCGCACTATGAGCATATCTACTTCTGTACTGTAGTTTAAATTCTCGCA
GATTTGTGAGGCAAGACCTCATCTCTGAAGATCATGAATCCTGTCGACAACTCTCCCTCTCAGGGCATCCACAGTGTGAG
AAATCTCTGCTTTTAAAGCCACCTCCAAAGCTTTAGCGCCGCCTCTCAGGGCAGTTGCTACCTCCAAGCCCAAAATGCTT
AGCATCGACGCTATGGCTAGAGGCAGCCTCCAAGCTC
>chr4A_1
TTCATCTCATTCGTGACTGAGTTGTCAA--TGTGTTGCAGCAGCTCGTCGGCTCCCTCTG-A-CCCTTCGACATGAAAAG
CTTGGTATAAAACTCAGTTGCCAATCCCCGCATCTTATCATCATCAGCGCACCTCGTCCCATTCTCTCTCATTAAAGCTC
GAACGGTGTTCTTT-TTTTTCCGTGAGAATCTCGGTTTTGGAAATACCGGGTGTTTAGATCGCCTGCCTTGAGCCATTAT
TCAATCCTTGACCGCTGCCTACACATAACTTCTTTGCGCTCATAAACTTTGCGCAGATGCTCATCTATGTCCTTTATCTA
TGCTTGATACCCCGTGGCAAGCGCCCGTTCTTTTGCATCTCAAAGTTATTCTCACAGTTTTGCTATCTGCCTATGAATTG
ACCCCAAAACAGCTCGGCTCCACTACTGCATGTCCAGTGACATGCTCTGCCAGAAAGAATATAAGCTTTGACACTGGTGA
GACACCATGT------------TGTAGATCAGCAGAGCGTGTTGAGCCATGCTTATTATACTAGGAACACATGGTAG-TT
TTTGCACGGGCATATGTGCTAGTAATTATAAAAACACTCCAGGATCGATCAATTGAACCGACCAACACTACATGCAGTTT
GCAAATTTTCAAAGCAAGAGATCACAGGCTAGTAAGACATGCACATAAAATCAACCGCGAAACCAGAAAGATTGGTGGCC
ACTTTTGTCTGTGCTCTTGAAAGAATGATTGGTGACCAATTTCGGGTGTGCTCCTCAAAACGAGGGGCAAGCGGTGGCTC
ATACATCCAGACATCGGTTCATGCAACCAATTTTGCACCACCGTAGGACACCCGCGAAGCTCTCATGGCCTCACGGCCTC
TTTAGACACCATCTCCTATTTTAGTGC-ATGGCCACCTTCATAAACTTACATGGCGCAAACATCTCACCGGAAGCAATAC
CATCTTCTTGGATCATCCCTCAACCACTTGTTAGGACAACTTACAATGGCCATGGTCAAGAACATTGCATGCACATTGTT
CCTTGCTGCCATTGTGGTGGCAGCCACATTGGTACCGGCGGCAAGCGCCGCCGGCGACAAATCCATTGAAGAGATGGATT
CATCCATCAAGAAGGCCTTTGACGCGGTCATCGCCGCCGCCCCAGCATCCAAAAGGTCTGCAGTAGAATCTTTCGTGCTC
AAGCAGAAAGTCGCTGCCACCGCCTCGCTCAATGAGGCCGCTGGAGATAAGAAGAAACTTGATGAAATTGTCACTGCCTA
TAAGATGGCCTCCGATGCGGTCCTTGCCGCTAAACCCGCCGACAAATATGCCGTATTTGACAAAACCTTCAGCGAGGCTG
GTCATCCTCCCACCGTGAAGGCCGTCGACGCATTGGAGAATTCCTTCAAGGAGGCCATTGGTGATGTCGTCGCTGCTGCC
CCAGCACCACAACAGGACGAAATGAAAGCCCTCGTCTTCCAGCAGACCGTCGTCGCTGCCAACATGCTTGCCCAGTCTGC
AAAGGACAAGAAGCTATTTGCTGCGGTTACCACCGCCTACAAGGTGGCTTCTGATGCGGTCCTTGCCGCTGCGCCCGCCG
ACAAGTATTCCGTAATGGAAAAAACCTTCGCGGAGGCTGCTGATGTCAAAGCAGCATGAGTGGCACC----TCGTCCGGC
CTTCGATGCACAAGACCACCAGCAGATTGATCACTTGATGTTATTGATTTTG-TTCCCATGCATGGAAGCATGCAATAGT
TCTTTTTTAAGTTTTCTCTTGTATTGGCGATTTTTAGCACCCCTGATGCAGATACTGGAAACCCTCATGGCCCGCCACCA
TGTACTTAGATTCCCCCCCAATGTATCAATATA-----------------------------------------------
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---------------------------------------------------------AATTACAGTACATTTTAATATAT
ATTTACTTATTTCTGTGGTTGATGCATGTGATTTCTGATGGCATAAAGATTACTACTCCCTCTGTCCTTGAAAAAGTGTA
CTTGCATTGGAAAGTCAAACTTTTTTATATTTGACCGCATTTATACAATAATAGACCAATATTTATGCCATCAAATTAGT
AGATTAGATTCGTGATAAAATATATTTTTATCATATACCTATTTGGTTTCACAAGCATTGATATATTTTTGCACAAACTC
GGTCAAACTTTGACATAGTTTGACCCTCCAACAAAGTTGAAATTTCAAGGACGGAGGGAGTAC----TTGATATAAATTG
CTTAGACTATCATAATTATGTTTCGCCTCACAATTTAGCGTGCTACGATGTCATCGCTGATCTTCCGGCACATTGACAGT
TTGACACTATCTTCTCCTGTGTGATCCCTATGTTTTGCCTCTG-CGTGTATCAATGTTTTTTTTCAAGAACCAGCTTTAA
ACACTTTATTATTCAGGTGGTTACTATCGTACAATTTCAACCACATACAATGGAATTACAACAACGGTACTGATATTAAC
GTCGAGCTTTAAAGCCTCCTTGAAGGTATGGGCCGCACCATTAGCATAT-TACTTCTCTACTGTTGTTTAAATTCTCGC-
-------------------------------------------------------CCTCTCAGGGCATCCACAGTGTGAG
AAATCTCTGCCTTTAAAGCTGCCTCCAAAGCTTTAGCGCCGCCTCTCAGGGCAGCAGCTGCATCCAAGCCCAAAATGCTT
AGCATCGACGCTATGGCTAGAGGCAGCCTCCAAGCTC
>chr5B_1
TTCTTCTCATTCGTGATTGCATTGTCAA--TGTGTTGCAGCAGGTCGTTGGCTCCCTCTAAA-CCCTCGGACGTGAAAAG
CTTGGTATAAAACTCAGTTGCCATCACCCGCATCTCGTCATCAACAGCGCATCTCATCCCATTCTCTCTCATTAAAGCTC
AGATGGTGTTCTTTCTTTTTATGTGAGAAGCTCGGTTTTGGAAATATCGGGTGTTCTGATCGTCTGCCTTGAGCCATTG-
--AATCCTCGACCGCTGCCTACACATAACTTGTTCGCGCTCATAAACTTCCCGTAGATGCTCGTCTATGTCCTTTATCTA
TGCTTCATACCATGTAGCAAGCGCCCGTTCTTTTGCATCTCGGAGTTATTCTCGCTGTTTTGCTACCTGCCTATGGATTG
ACCCCAAAACGGCTCAGCTCCACTACTGCATGTCCAGT------------------------------------------
-----CATGTTGAAATGGACGATGTAGATCAGTAGAGCGTCTTGAGCCATGCTTGTTATGCTACGAACACATGGTAGCTT
TTTGCACGAGCATATGCGCTAGTAACTATAAAAACACTCGAGGATCGATCGATGGAACCGACCAACACTACATGCAGTTT
GCAAATTTACAAACCAGGACATCACAAGCTAGTAAGACATGCACACAAACTCAATCGCAGAACCAGAAAGATTGCTGACC
ATGGGTGCA----CTCGTGAACGAAAGATTGGTGGCCAATTTCGGGTGTGCTCCTCAAAACAAGGGGCAAGCGGTGGCTC
ATACATCCGTACATGCGGTCATGCAACCAATTTTGCAGCACCGCAGGACACCCGCGAAGCTCTCCTGGCCTCACGTCCTC
TTTAGACACCGTCTCCTATTTTAGTGCAATGCCCACCTTCATATACTTACACGGCGCAAACATCTCACCGGAAGCAATAC
CATCTTCTTGAATCATCCCTCAACCAGTTGTTAGGTAAACTTACAATGGACATGGTCAAGAACATTGCATGCACATTGTT
CCTTGTTGCCATTGTGGTGGCAGCCACATTGGTACCGGCGGCAAGCGGCGCCAGCGAGAAATCCATTGAAGGGATGGATT
CATCCATCAAGAAGGCCTTTGACGCGGTCATCGCCGCCGCCCCAGCATCCAAAAGGTCTGCAGTAGAATCATTCGTGCTC
AAGCAGAAAGTCGCGGCCACCGCCTCGCTCAATGAGGCCGCTGGAGATAAGATGAAAGTTGATGAAATTGTCACCGCCTA
TAAGACGGCCTCCGAGGCGGTCCTTGCCGCTAAACCCGCCGACAGATATGCCGTATTTGACAAAACCTTCAGCGAGGCTG
GTCATCCTCCCACCGTGAAGGCCGTCGACGCATTGGAGTATTCCTTCAAGGAGGCCATTGGTGATGTCGTCGCTGCTGCC
CCAGCACCACAGCAGGACGAAATGAAAGCCCTCGTGTTCCAGCAGACCGTCGTCGCTGCCAACAAGCTTGCCCAGTCTGC
AAAGGACAAGAAGGTATTTGCTGCGGTTACCACTGCCTACAAGGTGGCTTCTGATGCAGTCCTTGCCGCTGCGCCCGCCG
ACAAGTATTCCGTAATGGAAAAAACCTTCGCGGAGGCTGCTGATGTCAAAGCAGCATGAGTGGCACCTCGATCGTCCGGC
CTTCGATGCACAAGACCACCAGCAGATTGATCACTTGATGTTATTGATTTTG-TTCCCATGCATGGAAACATGCAATAGT
TCTTTTTTAAGTTTTCTCTTGTATTGGCGATTTTTAGCACCCCTGATGCAGATACTGGAAACCCTCATGGCCCGCCACCA
TGTACTTAGATTCCCCCCCAATGTATCAATATA-----------------------------------------------
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---------------------------------------------------------AATTACAGTACATTTTCATATAT
ATTTACTTATTTCTGTGGTTGATGCATGTGATTTCTGATGGCATAAAGACTAC---------------------------
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------------------------------------------------------------TAGTACTTTGATATAAATTG
CTTAGACTATCATAATTACGTTTCGCCTCACAATTTAGCGTGCTACGATGTCGTCGCTGATCTTCCGACACATTGACAGT
TTGACACTATCTTCTCCTGTGTGATCCCTATGTTTTGCCTCTG-CGTGTATCAATGTTTTTTGTCAAGAACCAGCTTTAA
ACACTTTATTATTCAGGTGGTTACTATCGTACAATTTCAAGCACGTACAATGGAATTACAACAACGGTACTGATATTAAC
GTCGAGCTTTAAAGCCTCCTTGCAGGCATGGGCCGCACTATTAGCATATCTACTTCTCTCCTGTAGTTTAAATTCTCGCA
GATTTGTGAGGCAAGACCTCATCTCTGAAGATCATGAATCCTGTCGACAACTCTCCCTCTCAAGGCATCCATAGTGTGAG
AAATCTCTGCCTTTAAAGCCGCCTCCAATGCTTTAGCACCGCCTCTCAGGGCAGCTGCTGCCTCCAAGCCCAAAATGCTT
AGCATCGACGCTATGGCTAGAGG--------------
>SNPs
-----------S----------------SS---------S----------------------S-----------------
----------------------------S-------------S----S----------------S----S----------
------------------SS-S-----------------------------S----S-----------------------
--------------------------------S--S-S--------------S---S---------S-------------
----------------------------------------------S---------------------------------
--------------S--------------------------------SS--S------S-------S--------S----
----------------S--------------------------------------------------S----------S-
----------------------------------S---------------------------------------------
--------------------------------------------S-----------------------------------
-------S------------------------------------------------------------------------
-------------------------------------------------------S-------------------S----
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-----------------------------------------------------S--------------------------
-S-----------------------------------------------------------------------------S
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--------------------------------------------------S------------S--------------S-
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----------------------------------------------------------------S---------------
-------------------S------------------------------------------------------------
----------------------------------------------------------------------------S---
------------S-------S--S---------------------------SS------------------S--------
-------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-----------------------------------------------S--------------------------------
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-------------------------------------------------------------------------S------
---------------S------------------S----------S---------SS-----------------------
---------------S---------------------------S---------S--------------------------
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-----------------------------------------S---------------S----------------------
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----------S---------S---------------------------------S----S--------------------
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>forward_307
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-----------------------------------------------TTCCCACAGCTGCTCATCTG-------------
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>reverse_1120
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-------------------------------------------------------------------------------G
CATCCATCAAGAAGGCCTT-------------------------------------------------------------
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>forward_459
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---------------------------------------ACATGCTCCTCCGGAAAGAG---------------------
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>reverse_1733
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----------------------------------------------------TTTCCCATGCATGGAAACAGG-------
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