>input_sequence_72704
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----------------------------------------CAATATAAGGAGCAGCCCCCAAATCCAGATCTCAACATCT
CCCGGGGGCGAGTTGAGCAGAAATCAG-ATCAACCGATGGCCGGCGTCGAGTGTGTCTGCCCTGGCAAACGAAAGGCGGC
GTCTTTTTCCGGCGAGGAGCGTTCCCCGACGGCCAAGAGGACGGCCGGCTGTTCCCGAGGAGAGGAGGCGATTCCGGCGG
CGAAGAAGATGTGGCGGCTGCCGCGGGAGGAGGTCGGCCGCATCGTCGACTGGCCGCCGTACTTCCCTCCGGCCCTGTAC
CGAGACCTGAAGCGCGACAACCCGTCGCTTCTGCCATCGCCGGAGGAGGAGAAGGACGAGCACAGGGTGGTCCTCTACCG
GTACGCGCGCGAGTTCTACGAGCAGATGGAGGAGTTCGCCGGGTTCCAGGCCAGGGTCCGCCGCGAGTACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGCCGAGGCCGTGGCGCAGAGGCGGGTCAACCAGGCACGCGGTGATGCT
TTCGGAGGCATCTTTGCTCATCTTTCTTCAGAGTTCGTCGTCGACGCCGACACGTTCCGGCAACTCAAAAGGAAATGGAT
GGAGTAGCAAGAAAGACACAGGCAGTAGGATTTATCTTCAGTTATCCACTGTCCA-------------------------
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>chr3B_1_TraesCS3B01G017700
AGTGTTGATGTAGTTCTAGAAAAATGTTTGCGACATTTAAAAAATGTTTAAACAATTAAAATATTTAATTTAGTTTAAAA
CAATGTTTCGTACCATTCTAAAAAATCTTCACACGTTTCAGAAATATGTTCATGAAATTTAACAAGCAACTACAAAACGT
GAAAACTCTTGGCATGGTTAAAAAAATGTATCACTCAAAAAACAAATCCAGCGTGCATTTGGAAAATGTTTAAATGCACT
CAAAAAAGAGTTCAAAACATGTATTTGAAAAATGATCAATGTGTGTTATGTGTCTACAAGAAATTAACAGAATGCGTTGG
ATAAATTAGACATGTATTAAAAAAACAAAAAAAATCATACTGTAAGACGTTTTTGCAGCCTAACATATAGCTTGTGAAAA
CATCTTATATTACGAGACAGAGGGAGTAGTAAAGAAAACTAGAAACTCCAGAAAACCCACATAAAGAAAGCGGATTTACT
CCTTGGCGAGCGAGCGCTGCGATGCTCGATTCCCATGCGGGAATTGTTGGAACCGTGGGCCCCTTTTTCTTTCCTAATAA
ATCTCCCCCTAATCTAACCGTGAGGTCTTTCCTCAAATAAATCTCTCTTTCTTCCCTGAGATCTCCCTCCAATCTCTCTC
TCTCTCCTCCCTCTAATCTATCTCTCCCCCTGATTTTAAGGGGGTGGGTGGGTGCATGCATCCTGCTTTTGTTTCATGGG
CCTTACTTATGTTTACGGTTTGCATGCAAATTAAAAAAAGGAAATAAAGGAAAAGGAAACAACACATGGAACCGCTTCAA
TCTGGAACACAAGGCTGGTCGGAAAGCGAGCGCTCCGACGCGCGAGCGCTAATTAGCAACGCCCGAAAGAAAGAGAGAAA
ACGAACAGAAAACCGAAGATCAGCGGCCGTTAAAAAAAAGAGTATGACTCAGATTCCCTCAAAAAAAAAAAAAGAGTATG
ACTCAGATAGCCCGACGCGTGGACGGGGCTGAAACCAAACCAATATAAGGAGCAGCCCCCAAATCCAGATCTCAACATCT
CCCGGGGGCGAGTTGAGCAGAAATCAG-ATCAACCGATGGCCGGCGTCGAGTGTGTCTGCCCTGGCAAACGAAAGGCGGC
GTCTTTTTCCGGCGAGGAGCGTTCCCCGACGGCCAAGAGGACGGCCGGCTGTTCCCGAGGAGAGGAGGCGATTCCGGCGG
CGAAGAAGATGTGGCGGCTGCCGCGGGAGGAGGTCGGCCGCATCGTCGACTGGCCGCCGTACTTCCCTCCGGCCCTGTAC
CGAGACCTGAAGCGCGACAACCCGTCGCTTCTGCCATCGCCGGAGGAGGAGAAGGACGAGCACAGGGTGGTCCTCTACCG
GTACGCGCGCGAGTTCTACGAGCAGATGGAGGAGTTCGCCGGGTTCCAGGCCAGGGTCCGCCGCGAGTACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGCCGAGGCCGTGGCGCAGAGGCGGGTCAACCAGGCACGCGGTGATGCT
TTCGGAGGCATCTTTGCTCATCTTTCTTCAGAGTTCGTCGTCGACGCCGACACGTTCCGGCAACTCAAAAGGAAATGGAT
GGAGTAGCAAGAAAGACACAGGCAGTAGGATTTATCTTCAGTTATCCACTGTCCAATTAAGAGAGAAATCAGTAGTGCAC
AAACCTATTGCTGCTGCTTTGCTTTCTTTTTTCTGAAATCGACATATTGCACTGATCGGATGAGTCATGCTGTGACAGGG
CACAAACCAGTATAATCGATCACTTTTGGGACGGAGCATACACCTAGGCCTAGCTAGCTCCCTCATAA---TAATAA---
----------------TACTCCATTAGAGCCACTGGTCTGACTG----CAAACAGCATCAGACATATGATCGAGTTGGGT
TTCAGTCAGAACTCAGAAACCG----------------------------------------------------------
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------------------------TCCATCATTTTCCTCCTGAGTTGCCGGAACGTGCCGGCGTCGACGAGGACGCCTGA
AGAAAGATGAGCAACGATGGCTCCGAAAGCCTCACCACGTGCCTGGTTGACCCGCCTCCGCGCCTAGGCCTCGCCGCCGA
CGCAGTCGTAGTCGACCTCCACGAATCCTTTGGAGGCGTGCTCGCGGCGGACCCTGGCCTGGAACCCGGCTAACTCCTCC
ACGTGCTCGTA-CACTCGCGCGCGCGCCGGTAGAGGAGCGCCGTTGGCTCGTCCTCCTCCTCCTCCGGCGACGGCAGAAG
CGACGGGTTGCCGCGCTTCAGGTCTCGGTACACGGCGGGAGG---------CGACCAGTCGACGATCCGGTCGACCTTCT
CCCGCGGCAGCCGCCACATCTTCTTCGCCCCGTCCACGCGTCGTCAAACCGAAATGCCTGCTATCTGTAAAACCATGATG
CATGCGTGATTAACTGAATCGATTGCGAAGGGAGTACCTACTAGATCCATCAAGTGGAGGGGCCGGATCCAAGTCCAAGT
CGCACACGCTCCCCGCACGCGGATGGACGACTACTTCTTTCATATATAGAGAGAGTTGTCAGGCATCATGGTGGAGAGAA
CAAGGAGGGGAGGGAATGGTCCATGGCATAGCCGGAGGGAAGGCCGTACCACGGAGGGCATCCACATTCATTTCATTCAC
CGGGAACACAATTAAAGGACACAGGTTTCTCATCACACCGGGGCACGTCGTTC
>chr3D_1012
GCAGC---------------------------------------------------------------------------
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---------------------------------------------------------CCCCAATCCAGATCTCAACATCT
CCC---GGCGAGTTGAGCAGAAATCAGAATCAGCCGATGGCCGGCGTCGAGTGTGTCTGCCCTGGCAAACGAAAGGCGGC
GTCTTTTTCCGGCGAGGAGTGTTCCCCGAAGGCCAAGAGGATGGTCGGCTGTTCCCGAGGAGAGGAGGGGATTCCGGCGG
CGAAGAAGATGTGGCGGCTGCCGCGGGAGGAGGTCGACCGGATCGTCGACTGGTCGCCCTACGTCCCTCCCGCCGTGTAC
CGAGACCTGAAGCGCGACAACCCGTCGCTTCTGCCATCGCCGGAGGAGGAGAAGGACGAGCACACGGTGCTCCTCTACCG
GCACGCGCGCGAGTGCTACGAGCATCTGGATAGGTTCGCTGGGTTCCAGGCCAGGGTCCGCCGCGAGTACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGCCGAGGCCGTGGCGCAGAGGCGGATCGACCAGGCACGTGGTGAGGCT
TTCAGAGCCATCGTTGCTCATCTTAAATCAGAGGTCGTCGTCGACGCCGACACGTTCCGGCAACTCAAAAGGAAAATGAT
GGA-----------------------------------------------------------------------------
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>chr3A_1012
GCAGC---------------------------------------------------------------------------
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---------------------------------------------------------CCCCAATCCAGATCTCAACATCT
CCC---GGCGAGTTGAGCAGAAATCAG-ATCAGCCGATGGCCGGCGTCGAGTGTGTCTGCCCTGGCAAACGAAAGGCGGG
GTCTTTTTCCGGCGAGGAGTGTTCCCCGAAGGCCAAGAGGATGGTCGGCTGTTCCCGAGGAGAGGAGGAGATTCCGGCGG
CGAAGAAGATGTGGCGGCTGCCGCGGGAGGAGGTCGACCGGATCGTCGACTGGTCGCCGTACGTCCCTCCCGCCGTGTAC
CGAGACCTGAAGCGCGACAACCCGTCGCTTCTGCCATCGCCGGAGGAGGAGAAGGACGAGCGCACGGTGCTCCTCTACCG
GCACGCGCGCGAGTGCTACGAGCATCTGGATAGGTTCGCCGGCTTCCAGGCCAGGGTCCGCCGCGAGTACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGCCGAGGCCCAGGCGCGGAGGCGGATCGACCAGGCACGTGGTGAGGCT
TTCAGAGCCATCGTTGCTCATCTAAAATCAGAGGTCGTCGTCGACGCCGACACGTTCCAGCAACTCGAAAGGAAAATGAT
GGA-----------------------------------------------------------------------------
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>chr3A_1012
GCAGC---------------------------------------------------------------------------
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---------------------------------------------------------CCCCAATCCAGATCTCAACATCT
CCC---GGCGAGTTGAGCAGAAATCAG-ATCAGCCGATGGCCGGCGTCGAGTGTGTCTGCCCTGGCAAACGAAAGGCGGG
ATCTTTTTCCGGCGAGGAGTGTTCCCCGAAGGCCAAGAGGATGGTCGGCTGTTCCCGAGGAGAGGAGGAGATTCCGGCGG
CGAAGAAGATGTGGCGGCTGCCGCGGGAGGAGGTCGACCGGATCGTCGACTGGTCGCCGTACGTCCCTCCCGCCGTGTAC
CGAGACCTGAAGCGCGACAACCCGTCGCTTCTGCCATCGCCGGAGGAGGAGAAGGACGAGCGCACGGTGCTCCTCTACCG
GCACGCGCGCGAGTGCTACGAGCATCTGGATAGGTTCGCCGGCTTCCAGGCCAGGGTCCGCCGCGAGTACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGCCGAGGCCCAGGCGCGGAGGCGGATCGACCAGGCACGTGGTGAGGCT
TTCAGAGCCATCGTTGCTCATCTAAAATCAGAGGTCGTCGTCGACGCCGACACGTTCCAGCAACTCGAAAGGAAAATGAT
GGA-----------------------------------------------------------------------------
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>chr3B_1194
CGGGG---------------------------------------------------------------------------
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CGAAGAAGATGTGGCGGCTGCCGCGGGAGAAGGTCGACCGGATCGTCGACTGGTCGCC---------TCCCGCCGTGTAC
CGAGACCTGAAGCGCGGCAACCCGTCGCTTCTGCCGTCGCCGGAGGAGGAGGAGGACGAGCCAACGGCGCTCCTCTACCG
GCGCGCGCGCGAGTG-TACGAGCACGTGGAGGAGTTAGCCGGGTTCCAGGCCAGGGTCCGCCGCGAGCACGCCTCCAAAG
GATTCGTGGAGGTCGACTACGACTGCGTCGGCGGCGAGGCCTAGGCGCGGAGGCGGGTCAACCAGGCACGTGGTGAGGCT
TTCGGAGCCATCGTTGCTCATCTTTCTTCAGGCGTCCTCGTCGACGCCGGCACGTTCCGGCAACTCAGGAGGAAAATGAT
GGACGG--------------------------------------------------------------------------
------------------------------TTTCTGAGTT----------------------------------------
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-------------------------------------CTGACTGAAACCCAACTCGATCATATGTCT----GATGCTGTT
TGCAGTCAG---ACCAGTGGCTCTAATGGAGTATTATTATTATGAGGGAGCTAGCTAGGCCTAGGTGTATGCTCCGTCCC
AAAAGTGATCGATTATACTGGTTTGTGCCCTGTCACAGCATGACTCATCCGATCAGTGCAATATGTCGATTTCAGAAAAA
AGAAAGCAAAGCAGCAGCAATAGGTTTGTGCACTACTGATTTCTCTCTTAATTGGACAGTGGATAACTGAAGATAAATCC
TACTGCCTGTGTCTTTCTTGCTACTCCATCCATTTCCTTTTGAGTTGCCGGAACGTGTCGGCGTCGACGACGAACTCTGA
AGAAAGATGAGCAAAGATGCCTCCGAAAGCATCACCGCGTGCCTGGTTGACCCGCCTCTGCGCCACGGCCTCGGCGCCGA
CGCAGTCGTAGTCGACCTCCACGAATCCTTTGGAGGCGTACTCGCGGCGGACCCTGGCCTGGAACCCGGCGAACTCCTCC
ATCTGCTCGTAGAACTCGCGCGCGTACCGGTAGAGGACCACCCTGTGCTCGTCCTTCTCCTCCTCCGGCGATGGCAGAAG
CGACGGGTTGTCGCGCTTCAGGTCTCGGTACAGGGCCGGAGGGAAGTACGGCGGCCAGTCGACGATGCGGCCGACCTCCT
CCCGCGGCAGCCGCCACATCTTCTTCGCCGCCG-----------------------------------------------
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>chr3A_1692
GCTGCATTC-----------------------------------------------------------------------
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----------------------TTTCTTTCTTTCTGAATCGACAAATTGCATTCATTGGATCAATGATGTTGTGACAAGG
CACAAACAAGCACAATCGATCAC--TTGGGACGGAGCATACACCTAG------CTAGATCCCTCGTAATGCTAGTAC---
----------------TACTACATAAGAGTCACTGGCCTGACTG----CCAGA-------------T----GAGTTTGGT
TTCAGACAG---TCAGAAACCG----------------------------------------------------------
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------------------------TCCATCATTTTCCTTTCGAGTTGCTGGAACGTGTCGGCGTCGACGACGACCTCTGA
TTTTAGATGAGCAACGATGGCTCTGAAAGCCTCACCACGTGCCTGGTCGATCCGCCTCCGCGCCTGGGCCTCGGCGCCGA
CGCAGTCGTAGTCGACCTCCACGAATCCTTTGGAGGCGTACTCGCGGCGGACCCTGGCCTGGAAGCCGGCGAACCTATCC
AGATGCTCGTAGCACTCGCGCGCGTGCCGGTAGAGGAGCACCGTGCGCTCGTCCTTCTCCTCCTCCGGCGATGGCAGAAG
CGACGGGTTGTCGCGCTTCAGGTCTCGGTACACGGCGGGAGGGACGTACGGCGACCAGTCGACGATCCGGTCGACCTCCT
CCCGCGGCAGCCGCCACATCTTCTTCGCCGCCG-----------------------------------------------
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>chr3D_1696
CT----TTC-----------------------------------------------------------------------
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----------------------TTTCTTTCTTTCTGAATCGGCAAATTGCATTCATTGGATCAATGATGCTGTGACAAGG
CACAAACAAGCACAATCGATCAC--TTGGGACGGAGCATACACCCAG------CTAGATCCCTCATAATACTAGAGTCGA
GTTGAGACGGAGGGAGTACTACATAAGAGTA---------ACTG----CCAGA-------------T----GAGTTTGGT
TTCAGACAG---TCAGAAACCG----------------------------------------------------------
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------------------------TCCATCATTTTCCTTTTGAGTTGCCGGAACGTGTCGGCGTCGACGACGACCTCTGA
TTTAAGATGAGCAACGATGGCTCTGAAAGCCTCACCACGTGCCTGGTCGATCCGCCTCTGCGCCACGGCCTCGGCGCCGA
CGCAGTCGTAGTCGACCTCCACGAATCCTTTGGAGGCGTACTCGCGGCGGACCCTGGCCTGGAACCCAGCGAACCTATCC
AGATGCTCGTAGCACTCGCGCGCGTGCCGGTAGAGGAGCACCGTGTGCTCGTCCTTCTCCTCCTCCGGCGATGGCAGAAG
CGACGGGTTGTCGCGCTTCAGGTCTCGGTACACGGCGGGAGGGACGTAGGGCGACCAGTCGACGATCCGGTCGACCTCCT
CCCGCGGCAGCCGCCACATCTTCTTCGCCGCCG-----------------------------------------------
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>chr3A_1699
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-------------------TGCATTCTTTCTTTCTGAATCGGCAAATTGCATTCATTGGATCAGTGACGTTGTGACAAGG
CACAAAGAAGCACAATCGATCAC--TTGGGACGGAGCATACACCTAG------CTAGATCCCTCATAA------------
----------------TACTACATAAGAGTAACTGGCCTGACTG----CCAACAGCATCAGACATCT----GAGTTTGGT
TTCAGACAG---TCAGAAACCG----------------------------------------------------------
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------------------------TCCATCATTTTCCTTTCGAGTTGCTGGAACGTGTCGGCGTCGACGACGACCTCTGA
TTTTAGATGAGCAACGATGGCTCTGAAAGCCTCACCACGTGCCTGGTCGATCCGCCTCCGCGCCTGGGCCTCGGCGCCGA
CGCAGTCGTAGTCGACCTCCACGAATCCTTTGGAGGCGTACTCGCGGCGGACCCTGGCCTGGAAGCCGGCGAACCTATCC
AGATGCTCGTAGCACTCGCGCGCGTGCCGGTAGAGGAGCACCGTGCGCTCGTCCTTCTCCTCCTCCGGCGATGGCAGAAG
CGACGGGTTGTCGCGCTTCAGGTCTCGGTACACGGCGGGAGGGACGTACGGCGACCAGTCGACGATCCGGTCGACCTCCT
CCCGCGGCAGCCGCCACATCTTCTTCGCCGCCG-----------------------------------------------
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>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------
---SSS--------------------------S-----------------------------------------------
-------------------S---------S-----------S--S-----------------------S-----------
------------------------------------S---S------------S--------S-------S---S-----
----------------------------------------------------------------S----S----------
-S------------S---------SS------------------------------------------------------
----------------------------------------------------------------------S-----S---
-------S----S--------------------S-----------------------------------------SS---
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----------S--SSSS--------S------S-S--S----S---S-----------S--
-------S--S-S----------SS----------------------SSSSSS----S---------------S--S---
--------------------S---S----S------S------------S---------------S-SSSS-----S---
---------SSS--------------------------------------------------------------------
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--------------------------------------SS-----------------S------------S---SS----
-----------------------------------------------------------------S-------S------
---------------------------------------S------------------------------S---------
-SS---------------------S--------------S----SS---------S---------------S--------
----------S------------------------------------------------------------------S--
-----------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_540
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----------------------------------------GAATTGTTGGAACCGTGGGC--------------------
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>reverse_1785
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------------------------TTTGGGACGGAGCATACACC------------------------------------
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