>input_sequence_72687
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------------------------------------------ATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACAC
CCTCGCAGGGTATGTGCAGAT-----------TGAATCTTTTTCTTGTTCGGTTCTTGTTCATAG---------TGAGCT
CGACTGACGGGTGCGGCCATTTGCTCGTGTTCTC---TGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGTTGTATG
CGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTC
ACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAGGCAAATCAAGCAAGTCCATGGCCGCTT
TTCTTGTTTGATTTCT-----------------GTGGTGGCTTACTCTGCTTCTCACTCTCAGGATACCGATCTGGTACG
AGCTGAAGCTACTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGG
GAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCAGCAGCGGCAGCAAGGAGGAGAACGGCGGCAA
GGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGTCGCTC
CCAAGAAAGACCACTGA---------------------------------------------------------------
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>chr5D_1_TraesCS5D01G074300
AACCTGGTGTTTATATAAACACAATCATCAGTAGACAACCCA---------GCAGGCCACCACATGCC------AAGCCC
CTCCCAATGCGCGTGCTGCCCGCAAGCGACGGGACGTGTGCTGATCT-GCCCCCCGCGCCGACCTGACGCCTTCTTTATG
ATCTCTCGC--CGCCCGAGGTCTGGTTGGCTGTGCGCGAGCGT---GTACGACTGCTGGTGGCTCCGTTACCCTTTGTGC
CCAACAA--------------AGGTTTTCTGGAGGACGCGCAAAAAAAGTGTTCTCATCACGGATGATGGGTGAGGTGAG
CTGATGACTCGGTTTCCGGTGAACCATCTCCACTTT-GTGCCCAACAAAAGTGTTCTCATCA---CGGGTGGGGTGAGGT
GAGCCGATGGCTCGGTTTCA---GGTGAGCAATCTCCACCGAGCATTGTTGTGCTTGGTGCCAACTCCAC-------ATG
TCTCTTCGATGTCATTTTAACTACTCCCT-AGCCATTGTCTTCCACAAAACCTTAGATTCAGCACAACACGCCAATAATA
CTGGAGGGCTTGATCTGGTT---------------------CTGAAGCACCAAAAAAACAGTTACTC-------------
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--------------------------------------------------------TATATCGGCCGTCCTCATAACGTA
TTGCAGGAGGAATCTGCCTCTTGACCTGATTTACATTTCCTAGATCTCTCACAGTAGATCCAATCCAAAGATAGTAT-AA
AAACCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--------TACTCCCACCTGACC-TGCCGACCTGGTCGTGGTC
GGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGACAAAAAGAAGCCCCTCCTTCAGTGGCGCCGCG
CCATGTGTCCTCCACTCCGCCCGGCCACGGTATTTGTTATAAATCCACAGCTTTCCCCTCCCCCG---CAACAACAACAA
CATCCAAATCCAAATCCAAACCCAAACCAAAACCAAGAAGACACACTGTTCTC------TCCATCAGTCTCCGCCTCAAC
TGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGA---GAAGATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACAC
CCTCGCAGGGTATGTGCAGAT-----------TGAATCTTTTTCTTGTTCGGTTCTTGTTCATAG---------TGAGCT
CGACTGACGGGTGCGGCCATTTGCTCGTGTTCTC---TGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGTTGTATG
CGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTC
ACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAGGCAAATCAAGCAAGTCCATGGCCGCTT
TTCTTGTTTGATTTCT-----------------GTGGTGGCTTACTCTGCTTCTCACTCTCAGGATACCGATCTGGTACG
AGCTGAAGCTACTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGG
GAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCAGCAGCGGCAGCAAGGAGGAGAACGGCGGCAA
GGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGTCGCTC
CCAAGAAAGACCACTGAAGGAGATTGGAGCAGCAACCAGAGATCCCAGCAGCTAGCTTCTTGGCTTGTGGTG----TTTT
CTTGGTTTGTTTGAGATTTTAGATTGTGGTGTT-GAGAGTATTTACATATCTTGTCAGAAAAAAATTGTACTACGACTCC
ATATATGAGGCCCTCGGTTGCAGGCTAGCTAGATGGTGGGTGGCTTGTGGTGTTGTAG---TATTAC--ATATCTGTCCA
AAAAAATGTAGTACTGAGATTGGAGCAGTAACCAGAGATTTCATCTCATTTCGTCCCTTCGGCTAAGCTAGCTTGTGATG
TTCATTCTTGAGATTTGGCTAGCTGATTTGATGTGAAGCTTACACATATAGAATAGATCAAGTTGAACTTTTCATAAGAC
GGCAGATGTAAGGCCA--------CTACCTCTGTACACTAATATACA-CATTTTTGCAGTTTAATTTGAACTGCAAAAAC
GTTATTAAATACGGAATAGTTGATTAGCTAAGAAAATATTTAGACCCAAAATAAACGAGTATACCATCAATTCTTAGTGT
AGAAAGCCTTTAACTTAGGCCCTGTTTGTTTCAGCTTGCTTGATCCAAGTGTGGATTTGCTTTAGTGGCAGTCAACTTTG
TCACCGAAGTACGTTTCAGCTTGCTTGATCCACATGTGGATTTGCTTTAGTGGCAGTCAACTTTGTCACCGAAGTACACT
CTGAGATGCTTCAGATAATTACACTAAAAATGGCCAAATCCAGAACC---------TCTGAGATGCTTCAAGTAATTACA
CTAAAAATGGCCAAATCCAGAACCGAAGTACACTCTGAGATGCTTCAGGAAATTACAATAAAAACGGCCAAATCTAGATT
CAATTTCACTGATAAAGCTGATTCCAAATAGCTGTTTGTTTTCATATTCTAGATTCGACTCTGCCAGCTGATTCCAAATA
GCTGGTTGTTTTCAGATTCCAGATTCACTTC-ACTGGGCAAAGTTGAATCTCGTCCCATAACATAATCCAAACAAACACA
GACTTA
>chr5B_1
AACCTGATGTT--TATAAACACAATCATCAGTAGACAATTGATAACCCAGCGCAGGCCACCACATGTT------GAGCCC
CTCCCAATGCGCGTGCTGCCCGCAAGCGACGGGACGTGTGCTGATCCGG-CCCCCGCGCCGACCTGACGCCTTCTTTATG
ATCTCTCGC--CGCCCGAGGTCTGGTTGGCTGTGCGCGAGCGT---GTACGACTGCTGGTGGCTCCGTTGCCCTTTGTGC
CCAACAA--------------AGGTGTTCTGGAGGACGCGCAAAAAAAGTGTTCTCATCACGGGTG--GGGTGAGGTGAG
CTGATGACTCGGTTTCCGGTGAACCATCTCCACTTTTGTGCCCAACAAAAGCATCCTCATTTTCGCGGGTGGGGTGAGGT
GAGCCGATGGCTCGGTTTCATCAGGTGAGCAATCTCCACCGAGCGTTGTTTTGCTTGGTGCCAACTCCAC-------ATG
CCTCTTCGCTGTCATTTTAACTGCTCGCTTAGCCATTGTCTTCCACAAAACCTTAGATTCAGCACAACACGTCAAAAATA
CTTGA-GGCTTGATCTGGTT---------------------CTTAAGCACCAAAAAAACAGTTACTC-------------
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--------------------------------------------------------TATATCGGCCGTCCTGATAACGAG
TTGCAAGAAGAATCTGCCGCTTGACCTCACTTCCGTTTCCTAGATCTCTCGCAGTAGATCCAAAGA--------TAT-AA
AACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAG--------TGCTCCCACCTGACCTTGCCGACCTGGTCGTGGTC
GGTGCTCCATCTCGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGACAAAAAAAAGCCCCTCCTTCATTGGCGCCGCG
CCATGTGTCCTCCACTCCGCCCGGCCACGGTA-TTGTTATAAATCCATAGCTTTCCCCTT-CCCG---GAACAACAACAA
CATCCAAATCCAAATCCAA-----------------GAATACGCACTGTTCTC------TCCATCAGTCTCCGCCTCCAC
TGATTCGTCCAACCAAGAAGAAGAAGAGCTACAGAAGAGAAGATGAGCAAGCTCTGGACGATCCTCACCCACCTCCACAC
CCTCGCAGGGTATGTGCAGAT-----------TGAATTTGGTTTCCCTTCGGTTCTTGTTTGTGCAGTTCTTGCCGAGCT
CAACTGCCGCGTGCGGCCATTTGGTGTTGTTCTCTGTTGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCCCTGTATG
CGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTC
ACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAAACGACAACCAAATCAAGCAAGCTCATGGCTGCTT
TTCTTATTTGATTTCT-----------------GTGGTGGTTTATTCTTCTTCTTGTTCTCAGGATACCGATCTGGTACG
AGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGG
GAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCGGCAGC---A------AGGAGAACGGCTGCAA
GGTCGACAAGTCGTCCTCGCCGTCGACGTCTCCCAAGGAGAAGGAGAGCGCCAAGAGCAGGTTCCTCTCCTTCGTCACTC
CCAAGAAAGACCACTGAGTGAGATTGGAGCAGCAACCAGAGATCCCAGCAGCTAGCTTCTTGGCTTCTGTTTTTTTTTTT
TTTGGTTTCTTTGAGATTTTAGCTTGTGGTGCT-GGAGTA--TTACATATCTTGTCCAAAAAATTTGTACTAT-GACTCC
ATATATGAGGCCCTCGGTTGCAGGCTAGCTAGAT----GGTGGCTTGTGGCGTTGTAG---TATTACATATATCTGTCCA
AAAAAATGTACTACTGAGATTGGAGCAGTAACCAGAGATTTCATCTCATCT-ATCCCTTCGGCTAAGCTAGCTTGTGGTG
TTCATTTTTGAGTTTTAGCTAGCTGATTTGACGTGAAGCTTAAAAATTGAAATGGAC-CAAGTTGAATTTCTCATAAGAT
AGCAGATGTAAGGCCA----------------------------------------------------------------
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>chr5A_23
----------------------AATCATCAGTAGACAACCCA---------GCAGGCCGCCACATGTGAAGGTGAAGCCC
CTCCCAATGCGCGTGCTGCCCGCAAGCGCCGGGATGTGTGCTGATCT-G-CCCCCGCGCCGACCTGACGCCTTCTTTATG
ATCTCTCTCGGCGCCCGATGTCTGGGTGGCGCTGCGCGAGCGCGTAGTACGACTGCCGGTGGCCCCGTTGCTCTTTGTGC
GGGAGCAGGCAAGCCCCGTCCAGGTGGTCTGGACCCGCAC--AAAAAAGTGTTCTCATCACGGGTG--GGGTGAGGTGAG
CCGATGACTCGGTTTCCGGTGAACAATCCCCACTTT-GTGCCCAACAAAAGCATTCTCATTTTCGCGGGTGGGGTGAGGC
GAGCTGATAGCTCGGTTTCATCAGGTGAGCAATCTCCACCGAGCATTGTTTTGCTTGGTGCCAACTCCACTCTCCACATG
TCTCTTCACTGACATTTGAACTACAATTTGTTAGAGAAACCCTGAGTTGATATCTCATTAAGAAGATGGCCTTTAGTTAG
TAGGAGCAGCCTAGATGTACAACCAACTCACTAACCAAACCCTGAAGCAGCAAAAAAATACTCCCTCCATTTCAAAATAT
AGTGCTCCTGCATTTTTCGAGGTTCAACTTTGACCATAAATTTAACCAACGAGATCAACTGCGGCGGAAGAAAAAATTAT
ATAATTGAAAACTTCTTTCGAATACGAATTCACTGATATAATTTTTGCTCCCGCTACAATCGGTCTTGATAGTTAAATTT
ACGGTCAAAGTTGAAGCACGACCACTATATTGTGGAATGGAGGGAGTAGTTAGTTATATATCGGCCGTCCTCCCAACGAA
TTGCAGGGAGAATCTGCCTCTCGGCCTCACTTCCGATTCC---------------------AATCCAAAGAAAATAAAAA
AACCCTCCGGAGAAGATTTCGATGCATCACAAAGTAGGAGTATAGTACTCCCACCTGACC-TGCCGACCTGGTCGTGGTC
GGTGCTCCATCCTGTCGCCACGTGTACTGTCCCCATCAAACGCGTAGACAAAA-GAAGCCCCTCCTTCAGTGGCGCCGCG
CCATGTGTCCTCCACTCCGCCCGGCCACGGCA-TTGTTATAAATCGACAGCTTTCCCCTCCCCCGGAACAACAACAACAA
CATCCAAAAT-----------CCAAACCCAAGCCAAGAACACACGCTGTTCTGAATCTGTCCATCAGTCTCCGCTTCCAC
TGATTCGTCCAGCCGAGAAGAAGAAGAGCTGC--A---GAAGATGAGCAAGCTCTGGACCATCCTCACCCACCTCCACAC
CCTCGCAGGGTATGTTATGTGCAGCAGATTGATGAATTTGTTTTCCCTTCGGTTCTTGTTTGTGCAGTTCTTGCTGAGCT
CAACTGACCATTTCA------TGCTCTTCTCTGC---TGCTGCTGCAGGCCTGGCGTGATGCTCCTGTACCCGCTGTACG
CGTCGGTGCAGGCGATGGAGAGCCCGTCGAAGCTGGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCGTC
ACGCTCGTCGAGATGGTCCTCGAGTCCCTCATCTACTGGTAATTAACCAGCAAGAAAATCAACCAAGCTCATGGCCGCTT
TTCTTGATTTCTGCCATGGTTTTGATGTTAACCGTGGTGGCTTATTCTTCTTCTCACTCTCAGGATACCGATCTGGTACG
AGCTGAAGCTGCTGTTCCTGGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCGGCCTTCATCTACGACAGGTTCGTCAGG
GAGCAGCTCAGGAAGCACGGCCTCACCAACCACCCCGGCAGCGGCATCAGCAGC---AGCAAGAAGGAGAACGGCGGC--
-------AAGTCGTCCTCGCCGTCGACGTCCCCCAAGGAGAAGGAGAACGCCAAGAGCAGGTTCCTCTCCTTCGGCGCTC
CCAAGAAAGACCACTGAAGTAGATTGGGGCAGTAACCAGAGATCCCTGCGGCTAGCTTCTTGGCTTGTGGTG----TTTT
TCTGGTTTGTTTGAGATTTTAGCTTGTGGTCTTGGGAGTA--TTACATGTCTTGTCCAAAAAAGTTGTACTAGC-ACTCC
ATAGATGAGGCCCTCGGTTGCAGGCTAGCTAGAT----GGTGGCTTGTGGTGTTGTAGTATTATTACATATATCTGTCCA
GAAAAATGTACC---GAGATTGGAGCAGTAACCAGAGATTTCATCTCATCTCATCCCTCCGGCTAAGCTAGCTTGTGGTG
TTCATTTCTGAGATTTAGCTAGCTGATTTGATGTGAAGCTTACACATTGG--ATGGATCAAGTTGAACTTTTCATAAGAC
GACACATGTAAGGCCAGTAGGCCACTACCTCTGTACACTAATATACGGCATTTTTGCAGT---------ACCGCAAAAAC
GTTATTTAAGAGGGAATAGTTGATTAGCTAAGAAAATATTTAGACCCAAAATAAACGA-TATACCGTCAATTCTTGGTGT
AGA-----------------------------------------------------------------------------
---------------------------------------------------GGCAGTCAACTTCGTCACCGAAGTACACT
CTGAGATGCTTTAGGAAATTACACT-AAAATGGCCAAATCCAGAACCGAAGTACACTCCGAGATGCTTAAGGAAATTGCA
CTAAAAATGGCCAAATCCAGAACCGAAGTACACTCCGAAATGCC-CAGAAAATTACATTAAAAATGGCCAATTCTAGATT
CAGTTGCACTGATAAAGCTGATTTCAAATAGCTGTTTGTTTCCAGACTCTAGATTCGACTTTGCCAGCTGATTTCAAATA
GCTGGTTGTTTTCAGATTTCAGATTCGGCTTTACTGGGCAAAGTTGAATCTCGTCCCATACCAGAATCCAAACAAATACG
ACCTTA
>SNPs
------S----SS-----------------------------------------------------SS------------
-------------------------------------------------S------------------------------
---------------------------------------------------------------------S----------
-------------------------S-------------------------------------S--SS------------
---------------------------------------------------SS-------SS------------------
--------------------------------------------------S-----------------------------
--------S-----------------S--------------------------------------------S---S----
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------------------------------------------------------------------------------S-
--------S------------------S-S--S-S---------------S--------------------S-S------
--S-----------------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
-------------------SS-------S--S-------S-------------------------------------S--
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-------------------------------------S-S---SSSS-------------SS-SS---------------
-S-------S----------------S----------------------------------------------S------
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----------------------------------------------------S--------------SS-----------
--------------------------------------------S---S-------------------------------
----------S---------------------------------------------------------------------
------------------------------------------------------SSS------S----------------
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S---------------------S------------SSSSSSS--------------SS-----SS-SSSSSSS-------
----------------------------------SSSS------------------------------------------
----------S--------------------------------------S--S------------------------S--
------S---------S------------------------------SS-S---S-------------------------
----------------------------------------------S-------------SSSSSSSSS--S--------
------S--S-S----------------------------------------------S------S---------S----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----------------
-----------S--SS---------S--------------------------------S---------S-S-S----S--
-----------------------------------S--S----SS---S--------S------S------S--------
--S--S-----------------S-----------------S--S-S-------------S------------S------
------------------S-------SSS-S-----------------------------S--S------------S--S
SS----
>forward_556
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--------------------------------------------------------ATTCAGCACAACACGCCAAT----
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>reverse_2577
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----------------AGGCCCTGTTTGTTTCAGCT--------------------------------------------
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