>input_sequence_72684
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ATGGATCCGTCGGCGTCGGCGTCG------CTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTGCGGAGCCGGCG
GCCGCAGTTCGGTCGGCCGGAGCGGGAGCGGAACCCGCCTCG---GCGGGGGAGGGA---GGCGTCGGGGCCCAAGCCGT
CGGAGGTGTACGGGTTCGTGGGGTCCATCACCGTGGTGACGGCGACGGCGGTGTACCTGGCGTGGGCCTACGCGCCGGAG
CCGGCCCTCCGGTCGCTGGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTCGCCATGGTCGC
CCTCGCCCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTCGTCGCCACCCCTCCCCCCACCTCCTTCTCCACCATCTTCG
GTAACCACTTTCTCCGGCGACATTG-------------------------------------ATTGATGCGCTCAATTTG
TA-GTTAGTTTGCTCACCTTTCATCCACTTGTTGTTGCTCATTTGATCATTTA--------CATCCAT--------CCAG
ACGAGTACAGCCGCGAACGCCCCGGCGCCGCCGCCGCGGTTCATGTGGATGCCGCGACGGCGCAAGGAGATGAGGAGGAA
GAAGAAGCGGAGAGGCCGATCGAGCCCATTTCGGACATCAGCATCCATCACATCAACAACCTCATGTTTGGTGATCACTG
A-------------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G379700
CGTGTGCGCTCTGCAGCACCCTCTCTTTTACGACTCTGATTCTATCGTCGCTTAGGCGGGCGGCATCCTTGGATAACAGC
TCGTCAGCCATACTTGAGATGTCATGTTGTTGGAACTGAAAGTGAGATAACAGG---ATTACTATGTGATGATGGTTATA
ACTGTTCTGAAGAAGTGAGTAGTTCAATAGGCAA--------------------------TACCAGGATCTTGCCGGGCT
GGCCGCACAGCACACGGGCGTGTTCATCGCAGATTCTGTGCTGGAGCAACTCTGACTGCAAGTAGGTTGTGTAGAGGTTA
ATGATAATGTGTATAATCATGTGGATGTGGATGTAGGCAAGAGAAATGGGGTCAGGTTAGGTCAGGGCAGCAGGGCAGTA
CGATCTTGTTGGCGGTGTGGGTGAGCAGGCCGTCCTCCACGCACACCCTGCCGCGTCTCTTGAACCCCTCGACGCACCGC
AGCTCGCCGTCGACGCACCGGCCGTTCTCCGGGCAGGGCTCGCACGAATCTGCACAAGCAAACACAGCACA---------
-----------AGATTAACAA---AGGGATTTGCTTCTCATGGTAAGTAATTGAACTT-------------GAACCAAGC
AAAGGGGGGTTCTTTTTCTGAGCTCGAGCAAGGGGGAATCGACGGCTCACCGTAGGCGGCGGAATAGGGGTCGTCGGAGT
CGCAGAAGGGGGCGGGGCGGCGGTTGAGGACGCTGCAGGCGGCAGCGACGGCGGCGGCGATGGCGAGCACGGCGAGCAGG
CGGAGCAGGTCGTGGATTCCGGCGGGGAAGAGGCCCGGCGGCGGCTCGGCCC------ACCGCGGCTCCGGCCGGCTCCT
CCCCGTCCGCCGCGCCATG---CTCCGCTCCGTCCTCCCTCTTCTGTCT--------TCTCCCCCTCCTCCTCCGGCCTT
TTCCCCCCTTGGCGGGCCGCTGCAGGGCCCATCTGACCTGAGGCCT----GA-GATCAAACCCACCGCAGAGCCCAAATA
GCCCGTCGTTCTCGCTGTCACTCTGTCTCGCCTGCTCCT---------------------------------CAGATCGG
ATGGATCCGTCGGCGTCGGCGTCG------CTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTGCGGAGCCGGCG
GCCGCAGTTCGGTCGGCCGGAGCGGGAGCGGAACCCGCCTCG---GCGGGGGAGGGA---GGCGTCGGGGCCCAAGCCGT
CGGAGGTGTACGGGTTCGTGGGGTCCATCACCGTGGTGACGGCGACGGCGGTGTACCTGGCGTGGGCCTACGCGCCGGAG
CCGGCCCTCCGGTCGCTGGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTCGCCATGGTCGC
CCTCGCCCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTCGTCGCCACCCCTCCCCCCACCTCCTTCTCCACCATCTTCG
GTAACCACTTTCTCCGGCGACATTG-------------------------------------ATTGATGCGCTCAATTTG
TA-GTTAGTTTGCTCACCTTTCATCCACTTGTTGTTGCTCATTTGATCATTTA--------CATCCAT--------CCAG
ACGAGTACAGCCGCGAACGCCCCGGCGCCGCCGCCGCGGTTCATGTGGATGCCGCGACGGCGCAAGGAGATGAGGAGGAA
GAAGAAGCGGAGAGGCCGATCGAGCCCATTTCGGACATCAGCATCCATCACATCAACAACCTCATGTTTGGTGATCACTG
ACGACCCGCTCGCATCAAAATTCAGTTCCATTCCCCGCCGTCGCGACGATTTTTCTGTAACTATGATAGTAGCTGATAGT
GCAGTAATGCTGTTCTTCTTCTTACAGTGCTTGCTCGCCAAATTCTGTTAAAGAAATATTTGCCTTGTCTTAGTATACTG
TGATTTCTCAGCAAGAAAGTTCTTGAGCTTCTTCTTGGGTCTATACATAGCCCAGTGGTGGATAAATGAATTGGTCCAAG
AATGGGGATTGGAAAATA-TTAAGGTGCCATCATGGGCATCGCCAGGCAGGGCACAAGCCTCCGATAATGGCTCCCCTCC
GCTCTGCCATGCCAGCCTCATCCTTATTTAGCTTTGCTTTTGCTTCCCTCATAATTTTAACAAGTTATTTTTGGCAAACA
AGAAGAGTTTCGAATCAATGAAGACATCGACGACGACGACGCCTGCTCTCACCGCCACGGTGCTGGCGGCGGCGGCCTTG
ATCCTGGGCGCCCGCAGCGTCGACGCGGCGGTGGCAGACACGTGCAAGGCGGCCGCGGCCAGCGACGTGCGCGTCAACGT
GGACCTGTGCATGTCGAAGCTGGGCAGCCACCGCGGCAGCCTCGAGGCGGCGGACGCCTGGGGCCTGGCCAAGGTGGCCT
CGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCGGCGGACGTCAAGGCCCAGGAGGCCGCGGACCCCAACGTGCGCGTG
AAGCCGGCGCTCGCCAGGTGCGGCACGCTCTACAAGGACGTGGGCATGTGGTTCGCGGGCGCGCACGACCAGATCAGCAA
CCACGCCTACCCCGCGGCCAAGCAGAGGCTGGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGCCGCGTTCGCGGCCG
CCGGCGTGACCCTGCCGCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATCGCCGGCGCCATCACC
AACCTCATCAAGTGACTTCTCCTTTTCTTCAGCTAAGTACAG
>chrUn_3
--TGTGCGCTCTGCAGCACCCTCTCTTTTACGACCTTGATTCCATCGTCGCTTAGGCGGGCAGCATCCTTGGATAACAGC
TCGTCAGCCATACTTGAGATGTCATGTTGTTGGAACTGACAGTGAGATAACAGAATAATTACTAGATGATGAGGGCTATC
AGTGTATTCAACAAGTGCTGCATCCATCTCAGTATAGTAGTACTTGTGACAAGAAGCAATTACCAAGATCTTGCCGCCTT
GGCCGCATAAAGCGTGGGCATGCTCGTCGCAGATCCTGTGCTGGAGCAACTCTGACTGCAAGTAGGTTGTGCAGAGGTTA
ATAATGTGGATAATC---------ATGTGGATGTAGGCAAGAAAAATGGGGTCAGGTCAGGT-----CAGCAGGGCAGTA
CGATCTTGTTGGCGGTGTGGGTGAGCAGGCCGTCCTCCACGCACACCCTGCCGCGCTTCTTGAACCCCTCGACGCACCGC
AGCTCGCCGTCGACGCACCGGCCGTTCTCCGGGCAGGGCTCGCACGAATCTGCTCAAGCAAACACAGCACA---------
-----------GGATTAACAAGGTAGGGATTTGCTTCTCATGGTAAGTAGTTGAACTTCTGCCGTCGAATTGAATCAAGC
AAGGGGGAA------TTCTGAGCTTGAGCAAGGGGGGATCGACGACGCACCG------------TAGGGGTCGTCGGAGT
CGCAGAAGGGGGCGGGGCGGCGGTTGAGGACGCTGCAGGCGGCGGCGACGGCGGCCGCGATGGCGAGCACGGCGAGCAGG
CGGAGGAGGTCCTGCGCGCCGGCGGGGAAGAGGCCCGGCGGCGGCTCGGCCAGCGACAACCGCGGCTCCGGCCTGCTCCT
CCCCTGCCGCCTCGCCATGCTCCTCCGCTGCGCCCTCT-------------------------CCTTCTCCTCCGGCCTT
TTTCTTCCTTGGCTGGCCGGTTAAGGGCCCATCTGAGCTGAGGCCCGCTCGA-GATCAAGCCCACCGCACAGCCCAAATA
GCCCGTCTCCC--------------TCTCGCCTGCTCTGCATCTCGACGGAAGGGAAGGGAGCGGGGCGGAGCAGATCGG
ATGGATCCGTCGGCGGCGGCGTCG------CTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTGCGGAGCCGGCG
GCCGCAGTTCGGTCGCCCCGAGCGGGAGCGGCAGCGGAACCCGAAGCGGGGGAGGGAGCCGGCGGCGGGGCCCAAGCCGT
CGGAGGTGTACGGCTTCGTGGGGTCCATCACCGTGGTGATCGCGACGGCGGTGTACCTGGCGTGGGCCTACACGCCGGAG
CCGGCGCTCCGCTCGCTCGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTCGCCATGGTCGC
CCTCGCGCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTCGTCGCCACCCCTGCCCCCACCTCCTTCTCCACCATCTTCG
GTAACCATTTTCTATGGCGACATTG-------------------------------------ATTGATGCGCTCAATTTG
CTGGTTAATTTGCTCATCTTGCATCCATTTGTTGTTGCTTATT-GATCATTTACATCCATCCATCCAT--------CCAG
ACGAGTACAGCCGCGAACGCCCCGCCGCCGCCACCGTGCCG---GTTGATGCCGCAACGGCGCAAGAAGATGAGGAGGAA
GAAGAAGCGGAGAGGCCGATCGAGCCCATTTCGGACATCAGCATCCATCACATCAACAACCTCATGTTTGGTGATCACTG
ACGACCAGCTCGCATCAA--TTCAGCTCCATTCCCCACCGTTGCGACGATTTTTCTGTGACTATGA---TAGCTGATAGT
GCAGTGGTGCTGTTCTTCT---TACAGTGCTTGCTCGCCAAATTCTGTTAAAGAAATATTTGTCTTGTA--AGTATACTG
TGATTTTTTAGCAAGAAAGTTCTTGAGCTTC----TGAGTCTATACATAGCCCAGTGGTTGATAAATGAATTAGTCCAAA
AATGGGGATTGGATACTA-AGAAGC------CATGGGCATCGGCAGGCAGGGCAGAAGCCTCCGACAATGGCTCCCCTCC
GCTCTGCCATGCCAGTCTCATCCTTATTTAGCTTAG--TTTGCTTCCCTCATAATTTTAACAAGTTATTTTTGGCAAACA
AGAAGACTTTCGAATCAATGAAGACAGCGACGACGATGACGACGGCCCTCGCCGT---CGTGCTGGCGGCGCTGGCCTTG
ATCATGGGCGCCCGCACCGTCGACGCGGCGGTGGCGGACACATGCAAGGCGGCCGCGGCCAGCGACGTGCGCGTCAACGT
GGACCTGTGCATGTCGAAGCTCGGCAGCCACCGCGGCAGCCTCGAGGCGGCGGACGCCTGGGGCCTGGCCAAGGTGGCCT
CGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCCGCCGACATCAAGGCCCAGGAGGCCGCCGACCCCAACGTGCGCATG
AAACCCGCGCTCGCCAAGTGCGGCACGCTCTACAAGGACGTGGGCATGTGCTTCGCGGGCGCGCACGACCAGATCAACAA
CCACGCCTACCCCGCGGCCAAGCAGAGGCTCGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGCCGCGTTCGCGGCCG
CCGGCGTGACCCTGCCTCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATAGCCGGCGCCATCACC
AACCTTATCAAGTGATCTCTTCCTTTCTTCAGCGAGTACAG-
>chr5A_3
--TGTGCGCTCTGCAGCACCCTCTCTTTTACGACTTTGATTCCATCGTCACTTAGGCGGGCGGCATCCTTGGATAACAGA
TCGTCAGCCATACTTGAGATGTCATGTTGTTGGAACTGAAAGTGAGATAACAGA---ATCACTAGATGATGAGGGTTACA
GCTGTTCCGCAGA----AGTAGTTCAATAGGCAA--------------------------TACCAAGATCATGCCGGGCT
GGCCGCACAGCACACGGGCATGCTCATCGCAGATCCTATGCTGGAGCAACTCTGCCTGCAAGTATGTTGTGTAGATGTTA
ATAATAATGTGTATAAGCC------TGTGGATGCAGGCAAGAAAAATGGGGTCAGGTCAGGT-----CAGCAGGGCAGTA
CGATCTTGTTGGCGGTGTGGGTGAGCAGGCCATCCTCCACGCATGCCCTGCCGCGTTTCTTGAACCCCTCTACGCACCGC
AGCTCGCCGTCGACGCACCGGCCGTTCTCCGGGCAGGGTTCGCACGAATCTGCAGAGGCAAACACAGCACATGAGGAATT
TTCATTCGGACAGATTAACAAGGTAGTGATTTGCTTCTCATGGTAAGTAATTGAACTGCTGCCGTGAGCTTGAATCAAGC
AAGGGGGGGTCGAGGAATCACCGTA--------------------------------GGCGGAATAGGGGTCGTCGGAGT
CGCAGAAGGGGGCGGGGCGGCGGTTGAGGACGCTGCAGGCGGCGGCGACGGCGGCCGCGATGGCGAGCACGGCGAGCAGG
CGGAGGAGGTCGTCGATGCCGGCGGGGAAGAGGCCCGGCGGCGGCTCGGACC------ACCGCGGCTCCGGCCTGCTCCT
CCCCTGCCGCCGCGCCATG---CTCCGCTCCGTCCTCCCTCTTCTCCCCGGTGAGCCTCTCCTTCTCCTCCTTCGGCCTT
TTTCCTCCATGGCGGGCCCGTCCATGGCCCATCTGATCTGAGCTTAGGCCCACGAACAAGCCCACCGCATAGCCCAAATA
GCCCGTCTC------------------TCGCTTGCGCCGCATCTCGACGGAAGGGAACA----------GAGCAGATCGG
ATGGATCCGTCGGCGGCGGCGTCGGCGTCGCTGGTGGTGCGGAGCCCGCGGCAGACGGTGAGCCTGCTGCGGAGCCGGCG
GCCGCAGTTCGGGCGGCCGGAGCGGGAGCGGCAGCGGAACCCGAAGCGGGGGAGGGAGCCGGCGGCGGGGCCCAAGCCGT
CGGAGGTGTACGGGTTCGTGGGGTCCATCACCGTGGTGATCGCGACGGCGGTGTACCTGGCGTGGGCCTACACGCCGGAG
CCGGTGCTCCGCTCGCTGGGCATCACCTACTACCCCACCAAGTACTGGGCGCTGGCCGTGCCGTCGCTCGCCATGGTCGC
CCTCGCGCTCTCCCTCCTCGCCTACCTCGGCTCCAACTTGGTCGCCACCCCTCCCCCCACCTCCTTCTCCACCATCTTCG
GTTCGTCGTCTACCACCATCTTCACTTCAGCAACCAAATTACTTCTGCTCTCTAGCTACAACATTGATGCTCTCAAT---
----------------------------TTGTTGTTGCTCATTTGATCATTTC--------CATCCATTCATCCATCCAG
ATGAGTACAGCCGCGAGCGCCCCGCCGCCGCC---GTGCCG---GTTGATGCCGCGACGGCACAAGAAGAGGAGGAAGAA
GAAGAAGCGGAGAGGCCGATCGAGCCTATTTCAGACATCAGCATCCATCACATCAACAACCTCATGTTTGGTGATCACTG
ACGACC----------AA--TTCAGCTCCATTCCCCACCGTTGCGATGATTTTTCTGTCACT---ATGGTAGCTGATAGT
GCAGTAGTGCTGTTCTTCT---TACAGTGCTTGCTCACCAAATTCTGTTAAAGAAATGTTTGTCTTGTA--AGCATACTG
TGATTTTTCAGCAAGAAAGTTGTTGAGCTTCT---TGAGTCTATACATAGCCCAGTGGTGGATAAATGAATTAGTCCCAA
AATGGGGATCGGAATATTGAGAAGC------CATGGGCATCGCCAGGCAGGGCAGAAGACTCCGATAATGGCTCTTCTCC
GCTCTGCCATGCCAGCCTCATCCTTATTTGGCTT------TGCTTCCCTCATAATTTTAACAAGTTATTTTTGGCAAACA
AGAAGACTTCTGAATCAATGAAGACAGCGACGACGATGACGACGGCTCTAT---CCACCGTGCTGGCGGCGGCGGCCTTG
ATCCTGAGCGCCCGCACCGTCAACGCGGCGGTGGCGGACACGTGCAAGGCGGCCGCGGCCAGTGACGTGCGCGTCAACGT
GGAGCTGTGCATGTCAAAGCTCGGCAGCCACCGCGACAGCCTCGAGGCGGCGGACGCCCGGGGCCTGGCCAAGGTGGCCT
CGCTCGTCGGCGTCGACAACGCCAACCTCGCCGCCGCCGACGTCAAGGCCCAGGAGGCCGCCGACCCCAATGTGCGCATG
AAGCCGGCGCTCGCCAAGTGCGCCACGCTCTACAAGGACGTGGGCATGTGCTTCGCCAACGCGCACGACCAGATCAACAA
CCACGCCTACCCCGCGGCCAAGCAGAGGCTCGACGAGGCCCTGGCGCAGACGCAGCTGTGCAACGCCGCGTTCGCGACCG
CCGGCGTGACCCTGCCTCAGCCGCTGGCCCTGCACACCGTCGACTGCATCCAGATCGCCATCATCGCCGGCGCCATCACC
AACCTCATCAAGTGATCTCTTTC-TTCTTCAGCAAGTACAG-
>SNPs
SS---------------------------------S------S-------------------------------------
-----------------------------------------------------S----------SS------S-------
-----------------------------------------------------------------S--------------
-------------------S--S-----------S---------------------------------------------
--S-------------S-SSSSSS------------------S--------------S----SSSSS-------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--S-------SSSSS---------S-----------S-------S-S-----SSSSS-----------------------
-------------------------------------------S-----------S------------------------
-----S-----------S-------------------------------------------------------S------
----SS---------------------------------------SS-S-------------S-----------------
--S--S-------------S-S--------------S--------S-------------S---------S----------
-------SSS-SSSSSSSSSSSSSS-------------S-----------------------------------------
---------------S----------------------------------------------------------------
-------------------------------S-S-S-SSS-S----------------------S---------------
---------------------------------------SS------------------------------S--------
-----S-----S--------------------------------------------------------------------
------S-------------------------------------------------------------------------
-------S------S-----------------------------------------------------------------
SS-----S--------S---S------S----------------------------------------------------
------------------------S-------S---S-SSSSSS--S-------------------S-------------
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------S-----------SS-----S----------S----S----------------S--------S------------
------S------------SSS----------------------------------------S-----SSS---------
------S-------------------------SSS--S----------------------------------S------S
-------------------SS---SSSSSSS-----------------------S-------------------------
----------------------------------S-SS------------------------------------------
------S-------------------S---------S----S-S------S-------S---------------------
----------------S------------------S--------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------S--S-----------------------S---------------S--
----------------S---------------------------------S-------------------------S---
------------------------------S-------------------------------------------------
----------------S---------------------------------------------------------------
---------------SS---S-S----------S-SSSSSSS
>forward_1052
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------------------------------------------------------------------------CCCAAATA
GCCCGTCGTTCT--------------------------------------------------------------------
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>reverse_2073
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------------------------------------------------------------------------GGTCCAAG
AATGGGGATTGGA-------------------------------------------------------------------
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