>input_sequence_72683
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-----------------------------------ATGTTAATTATTTTTCGGGACTCTAGCAACTATCAGAAGGTAAGA
CAGTGATATGTTAAAGAG-GTCATTAAAGAAAGACTAGAGAAACCTGGCATACTAGACCACCACCACCACTTGATATCTC
CGTTGCCATTTCATTTCATCGCGGCAGCTTCGACGGAGGTTCACAATGGATATAATTGTTCCTGCAGTCGTAGGTGATAT
TGTCAACAGAGCTGTATCCTTTGCCATCAAGAAATGCTTGCAGCTTCCAAACGTCGACAAGAATCTGGAGCGGCTAAATC
AGTTGCTTCTAAGAGCCCATACCATCACCGAGGAGGCGGAGGGAAGGCTTATCAACAATCGAGAGATGCTCCAGCAGCTG
GGGATATTGATAGAAGGGATGCAGAGAGGCCACTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGG
GGATGAGCATGAGGTGAGTCACTTCTCTGGATTATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTCGTCCAATAACTACA
GAAAATCAGTGCTCTTTGGCAGTAACAACATAGAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGAC
TTGAAGGAGTTTGTTATTTTTCTGGGGAACTATCCTCCAATCTGCCGCTAG-----------------------------
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>chr3D_1_TraesCS3D01G286800
ATTGGTACAGAGCAGTCGACTAGTCGAGCGCGGCAAGATGTGACATGTCATCTGTCTACCACTA-------------TCT
CAGTGTCATTCTTCGATGATAACGTATCAGTAACCTCCGGAAGATGTAAACCGTGATG----------------------
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------------------------------------------------------TCTATTAGCTTTCGATTTGAGCCTAG
CAGCTACGGGCAGCTGCTACATTTTTACAAGATTGATGTGAGTGCTGAGTAAAA-AATAC--------------------
--------AGGTC-TTTTATGCGTAGAGGACTCGATATATGA---TGGATATCTGGCTGCT---TATTTCACTTCCTAGG
TTTTG-------------------CGCCTTCTTGACGTGATCTTATAGTACAAGTACAAAACCAGCATGTATGATTGTTA
GGATCTATGTTAATTTCTTCTGGCGTCCAAACCACCAACTGCCCCTTTCCAGTCACCAC-------TCTGTTTTGCTGTC
TGTTGGTGCCATCCTTCCCCTTTCCGACGTCGATCCATCCACCCTGAAAGGGATTGGCAAAGCTCTGCTAGACCGTAGGA
GCACTCTAGCACTAATTGTAGCACAGCTCACGTTCCTTTTCGGACGCAGTAGTCCATAATAGTGGTAAGTACACTGACAC
TG--CAGTTTTCTGAACTCTCAAGGCAATGTAGAGGGTTCATTTCCTTCTGATGTATACCTGCCGTCTTGGTTCGTCTCC
TCGAAATAAAAGCAGCTACATGTTCTGATGTTGCTCGGTAATAAGACAAACAGGCAACCGCCACATCCAAGACAACGCTA
CTTTGCACGAGGA-G-TTTATTCTTTCTTGGAGGCGTTGCCGCGAAAGAAATCGATCTAGGTGTAGGTGTTCATTTCATA
TCTTGTAATGGTTTGACCGTGGTTGCCCATGTTTTATACTCTGCTTGTTGATGTTTTTGGCCTCGTTGCCTTACATCAAC
TATAATAAAATATGGCTGTGTGCATCAATGATTGGGGGTTTCAACATCCTTTTCGAAAAGAAAAAAACAGTTGATCTTGG
TTCTGGGACTCTACCAACTAGCAGAAGAGCTATTGATGTTAATTATTTTTCGGGACTCTAGCAACTATCAGAAGGTAAGA
CAGTGATATGTTAAAGAG-GTCATTAAAGAAAGACTAGAGAAACCTGGCATACTAGACCACCACCACCACTTGATATCTC
CGTTGCCATTTCATTTCATCGCGGCAGCTTCGACGGAGGTTCACAATGGATATAATTGTTCCTGCAGTCGTAGGTGATAT
TGTCAACAGAGCTGTATCCTTTGCCATCAAGAAATGCTTGCAGCTTCCAAACGTCGACAAGAATCTGGAGCGGCTAAATC
AGTTGCTTCTAAGAGCCCATACCATCACCGAGGAGGCGGAGGGAAGGCTTATCAACAATCGAGAGATGCTCCAGCAGCTG
GGGATATTGATAGAAGGGATGCAGAGAGGCCACTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGG
GGATGAGCATGAGGTGAGTCACTTCTCTGGATTATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTCGTCCAATAACTACA
GAAAATCAGTGCTCTTTGGCAGTAACAACATAGAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGAC
TTGAAGGAGTTTGTTATTTTTCTGGGGAACTATCCTCCAATCTGCCGCTAGCCTTTTCCACATACTTTATTTTGGGAAAT
TGGTTGTTCTTTTGCCTGAAGGGATGTGAATGGTTGAACAACAGAAGCTCTTGGGTTAGAGTTTGCTTGCATCAAGAAGC
TTACTGGTAGATTTTCAGGATGCTTGCATTTGGAAGCGCAAATCCTGACCTGATGAGCAACCAACACCTGCATGGTTAGC
CACAGTT-------ATTGCAACAGAGTCTGAGGGTCCTCCCTTGCCTTCATACATGATTCGTTGATCAGCAAGAGACAAT
T--AGTGCTCGAGTCTGGTGCTTGGCTCGTGGATATCTGATGGCATACACAGACAGGCAGCTCCTTCTGTTTGGTGAACG
CCCGAATGAACTTCTGTTGAGAGATCAACCATTACATTGCTTGAGAATTGCCTGAATCCAGTGATGTGTTCTGGATTTCA
GACTACTACTCCATGGCGCTTTCCAGGCAGAACCAACTCCTCCAAGAGCAAGATCACTTTGTCAG----ATTCATGTCAG
GATGTGATATGCACTATTGCCTATACGAGAGATTTGATGCTCCAGGCCACGGGTGCTGAAAGGCGAGGGTGGAGAACGAG
AACACGCCGTGGGCAGGAACAGGAAGAAGAGCAGTATAAAAGCTGCATTTGATCTCTATTGTAAAAGCTGCACTTGCTGA
GTATTCTAAAAGCTGCAGTTGATGTATG-TAATTAGTTGTGTGAGTAGTAAATGGTGATTACTGATTGTGATGTATGCT-
--ACTCAAGCATTTGCTGGAAAT---ATATA-------------------------------------------------
----------------------------------------------------------------------------TATC
TGTGGCATTTTGGCTTTGTTCTATGTCTG---TGTTTCTATGTTCTTGGCGTGTGTGTCAC-------------------
------CTCATAATTTGTGTACTGGGCCTCAGCCGGAGGGGCGCTGCTGCG------CCGTGAGCTCGCCGGCAAAACAG
CCATCGCACT---GCTGCTGCTGCTGCTGGGCCTTCTCTGATGGCGCCAGTCAGGAGAAACACAGCCAAAAATCCTGAGC
GCACCCGACCTGCAGAAATGCACCAACAGCGCC
>chr3B_5
----GTATAGTGCAGTCGACCGGTCGAGGGTGGCAAGATGTGACATGTCATCTGTCTACCGCTCTACTATCTCAGATTCT
CAGTGTCATTCTTTGATGATAACGTGTCAATAACCTCCCGCAGATGTAAACCATAATACTCTCCATTCACAAATATAAGA
TGTTTTAACTTCTTCTTTTTTTTTGAATTGGACCTATATAGACACGCTTTAGTGTGTTTGTTCACTCATTTCAATCCGTA
TGTAGTCCATATTGAAATATCTAAAACATCTTGTATTTGTGAATGGTGGGAGTATCGATTAGCTTTTGATTTGAGCGTAG
TAGCTACGGACAGCTGCTGCATTTTCATCAGATTGATGTTAGTGTCCAGGAGAGCAATACAGGTCTTTTTATGTGTTTTT
CAAGGGATAGGTCTTTCTATGTGTAGAGGACTAG--ATATGACGATGGATTTCTGGCTAC----TATTTCACTTCCTAGG
TTTGGTAATTGGTATCGTATTTTACGCTTTCTTGACGTGTTCCTATAG------TACAAAACCAACATGTATGATTATTA
GGATCTATGTTAATTTCTGCTGGCATCCAAACCACCAACTGCCCCTTTCCAGTCACCAGTCACCAGTCTGTTTTGCTGTC
TGTTGGTGCCATCCTTCCCCTTTCCGACGCCGATCCATCCACCCCGAAAGGGATTGGCAAAACTCTGCTAGACCGTAGGA
GCACTCTAGCACTAATTGTAGCACAGCTCACGTTCCTTTTCCGACGCAGTAGTCCAAAATAGTGGTAAGTACACTGACAC
TGTGCAGTTTTCTGAACTCTCAAGGCAATGTAGAGGGTTCATTTCCTTCTGATGTATACCTGCCGTCTTGGTTCTTCTCC
TCGAAATAAAAGCAGCTACATGTTCTGATGTTGCTCGGTAATAAGACAAACAGACAAGCGCCACATCCAAGACAATGCCA
CTTTACACGAGAACGTTTAATTCTTTCTTGGAGGCATCGGTGCGGTAGAAATCAACTTAATCATAGGTGTTCATTTCATG
TCTTGTACTGGTTTGACCGTGGTTGCCCATGTTCCATACC------GTTGATGTTTTGGGCCTCGTTGCCTTACATCAAC
TATAATAAAATATGGCTATGT---------------GGTTTCAACCTCCTTTTCGGAAGG----AAAAAGTCTATCTTGG
TTCCTGGACTCTGGCA----------------------TTAATTAA-TTTTGGGACTCTAGCAACTATCAGAAGGTAAGA
CAGTGATATGTTAAAGGGGGTCATTAAAGA--------------------------------------------------
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>chr3A_129
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---------------------------------------------------------ATTAGCTTTTGATTTGAGCGTAG
TACCTAAGGGCAGCTGCTACATTTTCATCAGATTGTTGTTAGTGTCCAGGAGAGCAATAC--------------------
--------AGGTCTTTTTATGTGTAGAGGACTAGATATATGACGATGGATTTCTGGCTACTTAGTATTTCACTTCCTAGG
TTTGGTAATTGGCATCATATTTTACGCCTTCTTGACGTGTTCTTATAA------TACAAAACCAACATGTATGATTATTA
GGATCTATGTTAATTTCTTCTGGCATCCAAACCACCAACTGCCCCTTTCCAGTCACCAC-------TCTGTTTTGCTGTC
TGTTGGTGCCATCCTTCCCCTTTCCGACGCCGATCCATCCACCCCGAAAGGGATTGGCAAAACCCTGCTAGACCGTAGGA
GCACTCTACCACTAATTGTAGCACAGCTCACGTTCCTTTTCGGACGCAGTAGTCCAAAATAGTGGTAAGTACACTGACAC
TGTGCGGTTTTCTCAACTCTCAAGGCAATGTAGAGGGTTCATTTCCTTCTGATGTGTACCTGCCGTCTTGGTTCTTCTCC
TCGAAATAAAAGCAGCTACATGTTCTGATGTTGCTCGTTAATAAGACAAACAGGCAAGAGCCACATCCAGGACAACGCTA
CTTCACACGCGGATG-TTTATTCTTTCTTGGTGGCATTGCTGCGGAAGAAATCAATCTAGTCGTAGGTGTTCATTTCATA
TCTTGTAATGGTTTGACTGTGCTTGCCCATATTCTGTACTCTGCTTGTTGATTTTTTTGGCCTCGCTGCCTTACATCAAT
TATAATAAAATATGGCTGTGTGCATCAATGATTGGGGGTTTCAACCTCCTTTTTG--------AAAACAGTTGATCTTGG
TTCCGGGACTCTACCAATTAGCAGAAGAGCTATTGATGTTAATTATTTTTCGGGACTCTAGCAACTATCAGATGGTAAGA
CAGTGATATGTTAAAGAGGGTCATTAAAGAAAGACTAGAGAAACCTGGCATATTAG---ACCACCACCACTTGATATCTC
CGTTGCCATTTCATTTCATTGCGGCAACTTCGACGGAGGTTCACAATGGATATAATTGTTCCTGCAGTCGTAGGTGATAT
TGTCAACAGAGCTGTATCCTTTGCCATCAAGAAATGCTTGCAGCTTCCAGACATCGACAAGAATCTGGAGCGGCTACATC
AGTTGCTTCTAAGAGCCCATACCATCACCGAGGAGGCCGAGGGAAGGCTTATCAACAATCGAGAGATGCTTCAACAGCTG
GGGATATTGATAGAAGGGATGCAGAGAGGCCACTATATGCTTGATAACTTCAAATGTCGAGCCCTTCAACAAGGGAGAGG
GGATGAGCAGGAGGTGAGTCAGTTCTCTGGATTATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTTGTCCAATAACTACG
GAAAATCAGTGCTCTTTGGTAGTAACAACATAGAAGATCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGAC
TTGAAGGAGTTTGTTATTTTTCTGGGGAACTATCCTCCAATCTGCCGCTAGCCTTTTCCGCATACTTTATTTTGGGAAAT
TGGTTGTTCTTTTGCCTGAAGGGATGTGAATGGTTGAACCACAGAAGCTCTTCGGTTAGATTTTGCTTGCATCAAGAAGC
TTACTGGTAGATTTTCAGGATGCTTGCATTTGGAAGCGCAAATCCTGACCTGATGAGCAACCAACGCCTGCATGGTTAGC
CACAGTT-------ATTGCAACAGAGTCTGAGGGTCCTCCCTTGCCT-------TGATTCGTTGATCAGCAAGAGACAAT
TTCAGTGCTCGAGTCTGGTGCTTGGCTCGTGGATATCTGATGGCATACACACACAGGCAGCTCCTTCTGTTTGGTGAACA
CCCGAATAAACTTCTGTTGAGAGATCAACCATGACACTGCTTGAGAATTGCCTGAATCCAGTGATGTGTTCTGGATTTCA
GATTACTACTCCATGGCGCTTTCCAGCCAGAACCAACTCCTCCAAGAGCAAGATCACTGTGTCAGTAGGATTCATGTCAT
GATGTGATATGCGCTATTGCCTATATGAGAGATTTGATGCT--------------CTGAAAGGCGAGGGTGGAGAACGAG
AACACGCCGTGGGCAGGATGAAGAG-------AGTCTAAAAGCTGCATTTGATCTCTG-TGTAAAAGCTGCATTTGCTGA
GTAGTCTAAAAGCTGCAGTTGATATATGCTAATTAGTTGTGTGAGTAGTGAAGAGTGATTAGTGATTGTGATGCATGCTA
GCACTCAAGCATTTGCTGGAAATGCTATATA-------------------------------------------------
----------------------------------------------------------------------------TATC
TGTGGCATTTTGGATTCATTCTATGTCTCCATTTTTACTGTGTTCTTGGCGGGTTTTGTGTGTGTGTGCGCGCACGCGCG
TGCGCTCTCATAATTTGTGCACTGAGCCTCAGCCGGTGCGGCGCTGCTGCGCCGTGACCGTGAGCTCGCCGGCAAAACAG
CCATCGCTGCAGCGCTGCTGCTGCTGCTGGGCCTTCTCTGATGGCGCCAGTGAGGAGAAACACAGCCAAAAATCCTGAGC
GCACCCGA-------------------------
>chr3B_1066
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---------------------CATTAAAGAAAGACTAGGGAAACCCGGCATATTAG---ACCACCACCACTTGGTATCTC
CGCTACCATTCCATTTCATCGCGGCAACTTCGACGGAGGTTCACAATGGATATGATTGTCCCTGCAGTCATAGGTGATAT
TGTCAACAGAGCTGTATCCTTTGCCATCAAGAAATGCTTGCAGCTTCCAGACGTCGACAAGAATCTGGAGCGGCTAAATC
AGTTGCTTCTAAGAGCCCATACCATCACTGAGGAGGCCGAGGGAAGGCTTATCAACAATCGAGAGATGCTCCAGCAGCTG
GGGATATTGATAGAAGGGATGCACAGAGGCCACTATATGCTTGATAACTTCAAATGTCGAGACCTTCAAGAAGGGAGAGG
GGACGAGCATGAGGTGAGTCACTTCTCTGGATTATCTATGTTCAGTGCAGCAAAGTGTCTTCGTTCGTCCAATAACTACA
GAAAAGCAGTGCCCTTTGGTAGTAACAACATAGAAGACCTACAAGGTATGATTGCTACCCTAGAAAAGGCCATTGCTGAC
TTGAAGGAGTTTGTTATTTTTCTGGGGAACTATCCTCCAATCTGCCGCTAGCCTTTTCCACATGTATTGTTTTGGGAAAT
TGGTTGTTCATTTGCCTGATGGGATGTGAATGGTTGAACAACAGAAGCTCTTGGGTTAGATTGTGCTTGCGTCAAGAAGC
TTACTGGCAGATTTTCAGGATGTTTGCATCTAGAAGCACAAATCCTGA-----TGAGCAACCAAGATTTGCATGGTTAGC
CAGTAGCCACGGTGATTGCAACAGAGTCTGAGGTCCTTT-CTTGTCCTCATACATGATTGGTTGATTACCGACAGGCAAT
TTCGTTGCTCAATTCTGGTGCTCGGCTCGTGGATATCGGATGGCATACACACACAGGCAGCTCCTTCTGTTTGGTGAACA
CCCGAATAAACTTCTGTTGAGAGATCAACAATTACATTGCTTGAGAATTGCCTGAATCCAGTGACGTGTTC----TTTCA
GATTACTACTCCATGGCGCTTTCCAGCCAGAACCAACTCCTTCAAGAGCAAGATCACTGTTGTC--AGGATTCATGTCAG
GAT-----------------------------------GCT--------------CTGAAAGGCGAGGGTGGAGAACCAG
AACACACCGTGGACGGG--CAGGAAGAAGAGCAGTCTAAAAGCTGCATTTGATCTCTG-TGTGAAAGCTGCATTTGCTCA
GCAGTCTAAAAGCTGCAGTTAATGTATGTTAATTAGTTGTGTGAGTAGTGAAGAGTGATTAATGATTGTGATGTATGCTA
GCACTCAAGCATTTGCTGGAAATACTATATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGGATGT
ATCTAGACATATTTTAGTTATAGATACATCCCTTTCTATCCATTTTGATGACGAGTATTTTCGGACGGAGGGAGTATATC
TGTGGCATTTTGGCTTCGTTCTATGTCTCCGTTTTTATTTTGTTCTTGGCGGGTTTTGTGTGCACTGA------------
------------------GCACTGGGCCTCAGCCGGAGCGGCGCTGCTGCGCCGTGACTGTGAGCTCGCCGGCAGAACAG
CCATTGCTGCGGCACTGCTGCTGGTGCTGGGCCCTCTCTGATCGCGCCAGTGTGGAGAAACACAGCCAAAAATCCTGAGC
GCACCCGA-------------------------
>SNPs
SSSS---S--S---------SS------S-S-----------------------------S--S----------------
-------------S-----------S---S--------S-S-----------S-S--S----------------------
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--------------------------------------------------------S---------S---------S---
S------------------------S-SS----------S----SSS--S-S-S--------------------------
---------------------S----------S-----------------S-------S---------------------
---S-----------------------------------S--------SSSSSS----------S-----------S---
------------------------S-------------------------------------------------------
-----------------------------S--------------S----------------S------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------------S----------------------
----S------------------------------S----S---S--------S------SS------------------
---------------------------------S----------------------------------------------
---------------------------------------------S---------S--S-SSS-----------------
---S-------------S--------------------------------------------------------------
----------------------------------------------------S---SSS---------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------S------------------------------------------
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-------------------S------------------------------------------------------------
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------------------------------------------------------------S-------------------
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---------------------------------------------------S---------------------------S
-------S------------------------------------------------------------------------
--S-----------------------S-------------------------------S---------------------
------------S------------S---------------SSSSSSSSSSSSSS-------------------------
------------------S----------------S---------------------SS-------------S-------
---S---------------------------------------------S--SS-------S------------------
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----------------S-----------S----S--S--S-----------S--S-SSSSS-------------------
-------------------S------------------S-----------------------------------------
-------SSS-----------------------------------------S----------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_875
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-------------------------------------------------------ATACCTGCCGTCTTGGTTCG-----
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>reverse_2840
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---------------------------------------ATGTTCTTGGCGTGTGTGTC---------------------
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