>input_sequence_72644
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------------------------------------------ATGCACTCTACATGCATGCAGAACTTGTTCGTGGCGGG
CACGGACACAACATTGATCATGGTGGAGTGGGCCATGGCAGAGCTGATCCGGCACCCGGACACCCTGAAGCAGGCGCAGG
AAGAGCTGGACACCATCGTGGGCCGTGAGAGGCTCATCTCGGAGTCACACCTGCCGCGCCTCACCTTCCTGAGCGCGGTC
ATCAAGGACACTTTCCGGCTGCACCCATCGACGCCGCTCTTGCTACTGCGGATGGCCACTGAGGAGTGTGAGACCGCCGG
CTACCGCATTCCCAAGGGGACAGAGCTTCTAGTGAATGTGTGGGGGATCGCCCACGATCCGGCCCTGTGGCCCGACTCGC
TGGAGTTCAGGCCTGCCTGGTTCCTCCCCGGAGGGTCGCATGCTGACGTCGACGTCAAGGGAGGTGACTTCGGGCTGATA
CCATTTGGGGCGGGCCGGAGGATATGCGCGGGCCTCAGCAGGGGCATTAGGATGGTTGCCGTGACCACCGCCACGTTGGT
GCACTCGTTCAACTGGGAGCTGCCAGCAGGCCAGACGCCGG---------ACATGGAGGGGACATTTTCTCTGCTGCTGC
AGCTGGCCGTGCCATTGATGGTCCACCCGGTGCCTAGGCTGCTCCCATCGGCATACCAAATCGCATAA------------
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>chr6D_1_TraesCS6D01G015300
AGGGGGGTGCAAGGAGAAGCACCCCTACGGTACAGATCAGTTGCGACCGGCATAGGTCACATCTACTATATATATCCTTT
GTAAGCCACTGCA-TGAGATGAGATCATCGTTGTAAATCCCAGCATTTGTAAACTCTCATTATACAGTGAAGATTTGGTG
GCTGGTGTCTGTAGTTTTTTCCCTTCATGTTAGGGAGCCTTTTCACATTAAAATCATCGTGTCCCCTGGGTTTGATTCGT
TCTTTGTCATTGGTTTTGCCTGC-GTATCATTAATAAGTGGCATCACAGTCTTGTTTCTGTTTAGGGTTTCGATGACATG
GCATCGATGAACTCTGATCTACCGTTGCTGGATTACAACATAAGGTTTTCAATGAATCTGTTATGTATCATAACAGCTTG
TCCACAGATGTTTCGTCAGATACTTCTGAAGTGCCACAACAAGTTACTGTGTAGGTGCGGCACCTTGATGAGGAGGAAAA
TGTAATTGTTGATAATGATGATGATGCTCCAGATGCATCGACTAATGATAATGACGCTCCAGATAGACAAATTCATGATA
ACGATGTTGTGCAGCACTCACCGCGCTTTTGCAGCAATAAAATCAGTCTCTTGCAGCTAGCATGCGAAAGAGGATCATTA
ACAAACCTAAATGCCTAATTGAATAGCATTACCTTGTTCATTATGCTTTTAGTTGTGCTGAACAAGTTGAGAACTATCAT
GAGACATCCACATACGCTAAAGCCGTTGTTTCCGGTGACCGCAAGAAGTGGAATTCTGCTATGCATGAAGAGATGTAGTT
ACTTGATAAAAATGACACATGAAATATGAATTGAGAATTGCCTCGCTAAATAAATCAGTGTACAACGTCTCGCTAATAGC
ACACTATAACGCTTTATAGCACGCTAATAACTTATTATGAGGCCGACGCTATTTTGCTGTACCATGCTATTTTTTTCCTT
GGTGGTAGCTCAACATGGCAAATTCATAACCTCATTCGTCTAATGCACTCTACATGCATGCAGAACTTGTTCGTGGCGGG
CACGGACACAACATTGATCATGGTGGAGTGGGCCATGGCAGAGCTGATCCGGCACCCGGACACCCTGAAGCAGGCGCAGG
AAGAGCTGGACACCATCGTGGGCCGTGAGAGGCTCATCTCGGAGTCACACCTGCCGCGCCTCACCTTCCTGAGCGCGGTC
ATCAAGGACACTTTCCGGCTGCACCCATCGACGCCGCTCTTGCTACTGCGGATGGCCACTGAGGAGTGTGAGACCGCCGG
CTACCGCATTCCCAAGGGGACAGAGCTTCTAGTGAATGTGTGGGGGATCGCCCACGATCCGGCCCTGTGGCCCGACTCGC
TGGAGTTCAGGCCTGCCTGGTTCCTCCCCGGAGGGTCGCATGCTGACGTCGACGTCAAGGGAGGTGACTTCGGGCTGATA
CCATTTGGGGCGGGCCGGAGGATATGCGCGGGCCTCAGCAGGGGCATTAGGATGGTTGCCGTGACCACCGCCACGTTGGT
GCACTCGTTCAACTGGGAGCTGCCAGCAGGCCAGACGCCGG---------ACATGGAGGGGACATTTTCTCTGCTGCTGC
AGCTGGCCGTGCCATTGATGGTCCACCCGGTGCCTAGGCTGCTCCCATCGGCATACCAAATCGCATAATGTTCTGTTGCT
TAGCCTTCGCGGCCGGGCACTGTGACATGGAAAATTACATCGTGTGCTGTTTTGACAAGTTTAATAAGCCACTGTGACAA
GGAAAATAACATTTGTAGGGTTAGCTTGTGTACGAAAGAAGATCTGCTTTGTTGTTTTGGGAAAACAACTTCGTTTTCCT
GTCACGAATAAGAGATCATTGGGATTGGTGCGAATATGATTGCTGTTGTATATTTTCTTATCATTTTTTCATTGCTTCAG
GTTTTTTTTCCTTTTTACTCCACCAAGTCACCAACGCACATCCTGGGCCTTTTTTTTGCGGATAGAATAATTTCATTACT
TAGCCATTATGCGATTTGGTATTACTTAGCTAAGCAACAGAACATTATGCTTAGCCATTTTCCTTTTTACTGCTTCAGGT
TACTTGTATTATTTTTATGTGTGTACATTACTGTTGACTATTTTCATCCTTACTATGCAGAGGCTGGGTGTGTGATCATT
GTATCAGTACCCCTTATGCTTCATTTTATAAACTAATAAAGTTCACCCTTTGTCAGCAAAAATTAGCTGACTAAATAAAA
ACTACGTGTGGCCCCGTGTCTACCAGCCGGCGCCCCAGGTGGACTCGCAGTATGTGGTGGAGGATCAGATTAACTGCTGC
TTCATGGAGGCAGGGCCTGACATTCGCGTCCTGGAAGAGGAGCTCTCTCGCGCGGTCGTGGTCACCGTCGTGGGATTTCG
CCAGGCTGCGGATCTCGCCGCGGCGGCTGCGGCAATTGTGGAGGAATTCGAGCTCATGCCTTTGCATATGTCGATCAGGT
GCTACTACCCGCAGGATTTCCTTGTCCTCTGCCGTTTCGTGGAGCTGAGGAACAGGATGCTACACCGGGGCCGGGGCGGG
TCGCCTCTGTTTGATCTGTTGTTCTCTCCCTGGTCTCGCCTCTCTGGCGCCACTGGCATCTCCATGTCGTTCCTCGTGCC
GTTGGTCCTTCGTGGGGTTCCGGCGAAC
>chr6D_4
---GGGGTGCAAGTTGAAGCACCCCTGCGATATGGATCAGTTGCGACCGGCCTAGGTCACCTCTACTATATATATCCTTT
GTAAGGCACCGCACTGAGATAAGATCATCATTGTAAATCCCGGCATTTGTAAACTCTCATTATACAGTGAAGATTTGTTG
GCCGGTGTCCGTGGTTTTTTCCCTTCGTGTTGGAGAGCCATTCCACATTAAAATCCTTGTGTCTCTTGTGTTTGATTCGT
TCTTCGTCATTGGTTTTGCCTGTTGTATCTTTAACAAGTGGCATCATAGTCTTGCTTCTGTTTAGGGTTTCGATGACATG
GCATCTATGAAGTCCGATCTACCATTGCTGGATTACAACATAAGGTTTTCAATGAATCTGTTATGTATCATGACAGCTTG
TCCACAGATGTTTCGTCAGATACTTCTGAAGTGCCACAACAAGTTACTGTGTAGGTGCGGCACCTTGATGAGGAGGAAAA
TGAAATTGTTCATAATGATGATGCTGCTCAAGATGCATCGACTAATAATAATGATGCTCCAGATAGACAAATTCATGATA
ATGATGTTG-----------------------------------------------------------------------
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-------------------TGCAGCACTCACCCCCGCTTTTGCAGCAACAAAATCAGTCTCTAGCAGCT-----------
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------------------------------------AGCATGAGAAAGAGGAT---------------------------
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---------------------------------------------CATTAACAAACCTAAATGCCTAA------------
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>chr6D_828
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-----------------------------ATTAATAATTGCATCGCTAAATAAATCAGTGCACAACGTGTCGTTAATAGC
ACGCTATAGCGCAATATAG---------------TTTTGAGGCCGGCGCTATTTTGTTGTAGCATAGCAG---TTTCCTT
GATGGTAGCTCAACATGGCAAATTTATAACCCCATTCGTCTAATGCACTCTGCATGCATCCAGAACTTGTTCGTGGCGGG
CACGGACACGACATCGATCACGGTGGAGTGGGCGATGGCTGAGCTGATCCGGCACCCGGACATCATGAAACAGGCGCAAG
AAGAGCTGGACGCCATCGTGGGCCGTGAGAGGCTTGTCTCGGAGTCGGACCTGCCGCGCCTCACCTTCCTGAGCGCGATC
ATCAAGGAGACTTTCCGGCTGCACCCGTCGACGCCGCTCTCGCTGCCACGAATGACCACCGAGGAGTGCGAGGTCGCCGG
CTACTGCATCCCCAAGGGGACGGAGCTTCTAGTGAACGTGTGGGGGATCGCACGTGATCCGGCCCTGTGGCCTGACCCGC
TGGAGTTTAGGCCCGCCCGGTTCCTCCCCGGAGGGTCGCACGCAGACGTCGACGTCAAGGGAGGTGACTTCGGGCTGATA
CCGTTCGGGGCAGGCCGGAGGATATGCGCGGGCCTCAGCTGGGGCATTAGGATGGTCGCCGTGACCACCGCCACGCTGGT
GCACTCGTTCGACTGGGAGCTGCCGGCAGGCCAGACGCCGG---------ACATGGAGGAGAGATTTTCTCTGCTGCTGC
AGCTGGCCGTGCCGTTGATGGTCCACCCGGTGCCTAGGCTTCTCCCATCGGCATACCAAATCGCATA-------------
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>chr6B_965
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------AGCTCAACATGGCATATTCATAACCTTAGTC-TCCAATATACTCTAT----ATGCAGAACTTGTTTGTGGCTGG
CACAGACACGACATCGATCACAGTGGAGTGGGCGATGGCGGAGCTGATCAGGCACCCAGATATCCTGAAGCAGGCCCAGA
AAGAGCTGGACGCCGTCATTGGCCGTGACAGGCTCGTCTTGGAGTCGGACCTGCCGCGCCTCAACTTCCTCAACGCGATC
ATCAAGGAGACCTTCCGGCTGCACCCATCGACACCGCTCTCGCTGCCGCGGATGGCCACCGAGGAGTGCGAGGTTGCCGG
CTACCGCATCCCCAAGGGAACGGAGCTTCTAGTGAACGTGTGGGGAATCGCCCGCGACCCGGCCCTATGGACGGACCCGC
TGGAGTTCCGGCCAGCCCGGTTCCTTCCCGGAGGGTCGCACGCGGACATCGACATCAAGGGAGGTGACTTCGGGCTGATA
CCGTTCGGGGCTGGCCGGAGGATATGCGCAGGCCTCAGCTGGGGCATTAGGATGGTCGCCGTGACGACCGCCACGCTGGT
GCACTCGTTCGACTGGGAGCTTCCGGCAGGCCAGATGCCGG---------ACATGGAGGAGACATTTTCTCTGCTGCTGC
AGCTGGCCGTGCCATTGATGGTCCACCCGGTGCCTAGGCTGCTCCCATCGGCATACCAAATCGCATA-------------
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>chr7B_1011
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----------------------------------------------------CATGCATGCAGAACTTGTTCGTGGCGGG
CACGGAGACGACATCGACCATAGTGGAGTGGGCGGTGGCGGAGCTGATCCGGCACCCGGACATGCTGAAGCGGGCGCAGG
AGGAGATGGACGCCGTCGTGGGCCGGGACAGGCTCGTCTCGGAGTCCGACCTGCCGCGCCTCACGTTCCTCAACGCTGTC
ATCAAGGAGACGTTCCGGCTGCACCCGTCGACGCCGCTCTCGCTGCCGCGGATGGCCTCCGAGGAGTGCGAGGTCGCCGG
CTACCGCATCCCCAAGGGCACGGAGCTGCTGGTCAACGTGTGGGGCATCGCCCGCGACCCGGCCCTGTGGCCCGACCCGC
TGGAGTTCCGGCCCGCCCGGTTCCTCCCGGGAGGGACCCACGCCGACGTCGACGTCAAGGGAGGCGACTTCGGGCTGATC
CCGTTCGGGGCCGGCCGGAGGATATGCGCGGGCCTCAGCTGGGGCCTGCGGGTGGTCACCGTGACGGCGGCGACGCTGGT
GCACTCGTTCGACTGGGAGCTGCCGGCGGGCCAGACGCCCGACAAGCTCAACATGGAGGAGGCATTCTCTCTGCTGCTGC
AGCGGGCCGTGCCGCTGATGGTTCACCCCGTGCCGAGGCTGCTCCCCTCGGCATACCAAATCGCATAA------------
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>chr7D_1011
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----------------------------------------------------CATGCATGCAGAACTTGTTCGTGGCGGG
CACGGAGACGACGTCGACGATAGTGGAGTGGGCGGTGGCGGAGCTGATCCGCCACCCGGACATGCTGAAGCGGGCGCAGG
AGGAGATGGACGCCGTCGTGGGCCGGGGCAGGCTCGTCGCGGAGTCCGACCTGCCGCGCCTCACGTTCCTGAACGCGGTC
ATCAAGGAGACGTTCCGGCTGCACCCGTCGACGCCGCTCTCGCTGCCGCGGATGGCCTCCGAGGAGTGCGAGGTCGCCGG
CTACCGCATCCCCAAGGGCACGGAGCTGCTGGTCAACGTGTGGGGCATCGCCCGCGACCCGGCCCTGTGGCCCGACCCGC
TGGAGTTCCGGCCCGCCCGGTTCCTCCCGGGAGGGACCCACGCCGACGTCGACGTCAAGGGAGGCGACTTCGGGCTGATC
CCGTTCGGGGCCGGCCGGAGGATCTGCGCGGGCCTCAGCTGGGGCCTGCGGGTGGTCACCGTGACGGCGGCCACGCTGGT
GCACTCGTTCGACTGGGAGCTGCCGACGGGCCAGACGCCCGACAAGCTCAACATGGAGGAGGCCTTCTCTCTGCTGCTGC
AGCGGGCCGTGCCGCTGATGGTCCACCCGGTGCCCAGGCTGCTCCCGTCGGCATACGAAATTGCATAA------------
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>chr7A_1011
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----------------------------------------------------CATGCATGCAGAACTTGTTCGTGGCGGG
CACGGAGACGACGTCGACGATAGTGGAGTGGGCGGTGGCGGAGCTGATCCGGCACCCGGACATGCTGAAGCGGGCGCAGG
AGGAGATGGACGCCGTCGTGGGCCGGGACAGGCTCGTCTCGGAGTCCGACCTGCCGCGCCTCACGTTCCTGAACGCGGTC
ATCAAGGAGACCTTCCGGCTGCACCCGTCGACGCCGCTCTCGCTGCCGCGGATGGCCTCCGAGGAGTGCGAGGTCGCCGG
CTACCGCATCCCCAAGGGCACGGAGCTGCTGGTCAACGTGTGGGGCATCGCCCGCGACCCGGCCCTGTGGCCCGACCCGC
TCGAGTTCCGGCCCGCCCGGTTCCTCCCGGGAGGGACCCACGCCGACGTCGACGTCAAGGGGGGCGACTTCGGGCTGATC
CCGTTCGGGGCCGGCCGGCGGATCTGCGCGGGCCTCAGCTGGGGCCTGCGGGTGGTCACCGTGACGGCGGCCACGCTCGT
GCACTCGTTCGACTGGGAGCTGCCGGCGGGCCAGACGCCCGACAAGCTCAACATGGAGGAGGCCTTCTCTCTGCTGCTGC
AGCGGGCCGTGCCGCTGATGGCCCACCCGGTGCCCAGGCTGCTCCCGTCGGCGTACGAAATTGCATAA------------
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>SNPs
SSS----------SS-----------S--S--SS-----------------S--------S-------------------
-----S---S----------S--------S-----------S-----------------------------------S--
--S------S--S-------------S----S-S-----S--S------------S-S-----S-S--S-----------
----S-----------------S------S----S-----------S-------S-------------------------
-----S-----S--S--------S-----------------------------------------------S--------
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--S-------S------------S-----S----------------S-------S-------------------------
-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S------S------------------S-------S---S-------
--S-----S---SS-----SSSSSSSSSSSSSSS--S--------S----------S----S---SSS-SSSS-------
-S------------------------------------------------------------------------------
---------S----S------------------S-----S----------------------S-----------------
-----------S-----------------------S----------SS--------------------------------
--------S-----------------------------------S-S-------------------------SS------
---------S-----------S--------------S----------------S----------------------S---
-------------S---S----------------------S--S------------------------------------
--S--S-----S--------------------------------------------S------------------S----
----------S-------------S----------------------------------S--------------------
--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_581
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-CGATGTTGTGCAGCACTCAC-----------------------------------------------------------
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>reverse_2473
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------------------------------------------------------------------------GATCAGGT
GCTACTACCCGC--------------------------------------------------------------------
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