>input_sequence_72637
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-------------------------------------------------------------------ATGGCCCTGGCTG
GTAGGCTGCTCGTCCTCCTCGCCGTCGCGCTTCTTGCCGTCTCCATCATCGCCGAACACAAGGTGAGATCTCTGGTGATC
--CACCCGCCGGGCGGTATGCACGACGA----GAAGCCAAACTGTTCGTCTTGCTTGGGATGCTTA---CATGGCATATT
TTGTGATCAGGTGTTTGCGTCAGGGACTGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGCTTCCACG-
-GCTTTCTGTTGCACGTTTTAAAAGAGA-TTTTGGGGATAGATCTGTTGCTGATCGTGTGTTTTTC------TTCTCCTT
TCCGAATTCTTTCTTCAGGGAGGACAGGGCACTCTCAAGATATACCGTGAGTTGCTCTT-CCTGCTCATATGTG------
-------------------------------------------------------AATCTGAATCTGCTGTTTTCGCCTG
AG-----ATGAAACGAAATGTAATGTGAGTTGGACTAGTTGTTGATGTTGCGGCGCATGAACTGCAGAGTGCAAGCCGGC
GTGCGAGTACCGGTGCAGCGACACCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACCTGCCTGT
GCGTGCCGTCGGGCTTCTACGGCCACAAGGACGAGTGCGCCTGCTACAACGACTGGAAGACCAAGGAGGGACACCCCAAG
TGCCCCTAG-----------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G225600
CGGCGAGGAGCGGCGATGGAGACGGCGAGGGGCAGCCCCTATTAGTTTTTTTGTTTGTAAAATATGTTTAAATTTAAACG
AACTCATCAATGTTTGCGTTAAATTTAAGTCGTATTTGCGCGGCATTCAACTTTTTCAAAAAAATGGACGCCACGACTGG
GGGGCATCACGCCCCCAGCGTGCGGGTTAGCACCGGTGGGTCACGATTTTTAGCCCTCCTGAAACGGCTGGAGATGCTCT
TACAAATTCTACCACGAGAGCTCGTCTCACTCGCGACTTTTGCTAGCGTTTCCGGGCAGGCTCCCCACGTGAAGGGGCAC
ATGCGGGCGCGCCAAGCTGTGTAGTGTAACGTGCACGCACTCATGCACGCAGCTAGGCGACGCCCCAAAGCACCGGCATT
TCAGCGCCGCCCTCCGTAATCCGTATGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGA
AAATCAT-----AGAAAATTCTGGGGTCAGAGAACGCCCGGATCTGTGCCCGGGACTGGACGGCAAATTCCGTCAATGCC
AGAGCCGTCGGCATGCATCGCATTGCGTGTGTTGCGCAGCTAGCACT-ATTCCTAGTCTAGCCTTATA------------
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--------------------------------------------------------CTCTGATCAGATTAGTAATCCACC
ATGCAAGTGGGAGAGAGAGAG----------------AGAGAGAGAGAAGATTAAGCAAGATCGAATCTGTCCGGCCTCA
TATGCAGCAAAAAAGGTTTAATACTGTAGATGGGATGAACATGGCATGAGTAT----CTAGCATATGTCGATGCATTGCT
TTTGACGCATGTTGGGCTCTGCAATACTTGG-CTTTTCCGTCCAGCTTTAGCTCG----TTTTCACGGTATAAAATGTTC
AAAACTTCTT-GAATCAACACCTATTGCCTATAAATACGTCCTCAGATCCATTTCACT-------CTGCCCAGCCCAGAA
GCCGCTGCTTCACTACACTTCACTGGCCAGCGTCTTCTCTTTTGGCAGCCCAGCACGCTTCAGCAAAATGGCCCTGGCTG
GTAGGCTGCTCGTCCTCCTCGCCGTCGCGCTTCTTGCCGTCTCCATCATCGCCGAACACAAGGTGAGATCTCTGGTGATC
--CACCCGCCGGGCGGTATGCACGACGA----GAAGCCAAACTGTTCGTCTTGCTTGGGATGCTTA---CATGGCATATT
TTGTGATCAGGTGTTTGCGTCAGGGACTGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGCTTCCACG-
-GCTTTCTGTTGCACGTTTTAAAAGAGA-TTTTGGGGATAGATCTGTTGCTGATCGTGTGTTTTTC------TTCTCCTT
TCCGAATTCTTTCTTCAGGGAGGACAGGGCACTCTCAAGATATACCGTGAGTTGCTCTT-CCTGCTCATATGTG------
-------------------------------------------------------AATCTGAATCTGCTGTTTTCGCCTG
AG-----ATGAAACGAAATGTAATGTGAGTTGGACTAGTTGTTGATGTTGCGGCGCATGAACTGCAGAGTGCAAGCCGGC
GTGCGAGTACCGGTGCAGCGACACCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACCTGCCTGT
GCGTGCCGTCGGGCTTCTACGGCCACAAGGACGAGTGCGCCTGCTACAACGACTGGAAGACCAAGGAGGGACACCCCAAG
TGCCCCTAGTTGCAG---GATTCTGCCT-------CGCCGTTGAAGCCATTGCTCGATCAGCCAGGCCGGAGCCGGGCGG
TTACATG---TAGCAGGTTTGCCGCTTCCGGCGACGCCGGTGTAAGAACTCGATCGAGATCTGGGTTGT-TGTA----GT
ATGTCGCATGCGTCCGCCTCTTCTCT------------GGCGGCGCACGCGGTTGTATCGTGGGTTC-------------
----------------------AAACACAGTTTGTTGCACGTT---GGAGGCACGCCGACGCAGTTGTTGTAGCACTACA
ATACACGTAGTAAATCGTGTAATCCTAAGAGAGTGGGGCGCC-------GGTCGTGTTGGTTGTTCTGCACTCTGCATTC
GAGATGACGCCGGTCCACCGAGCCCGGGCATGAGAGGAAACGAGGGCAACTTGCCGGAACCCCCGCCTTGAAACGAGATG
CGCCGGTGGGCACTGCCCTCAAAGAGCGACCTTTTC-AAGAAAGAAAAAAGGTCGAAACCCGCG---------TCCAAGA
ATGCACACAACCATCTTTATCAATAAAATCTGACAAAACAAATACGTA--GATCAACCTAAAGCCATCTTCACGGAGATG
TCTGTCACTACACCTACAAGTTTGATAGTGTGACCTAACCTCACACCAACACACACCATCTAATCTGATGGCCTCACCAA
GCCGTTTCATGGTAAGCCGAGAGCACTAACTGGTCTAGCAGACCATTAGGGTACACCACATGCCCACACTCTGGAGTCCA
CTGCCGACATCTTCCGTCGTCCTATCCTCGGGAGGGACCAACACATTGACCTTGT-AGGCCCAATTGTCGTCGACGTCAG
CATGATGTCAAACAGCACCACCATCTTGCGTGCGCCCATCAACATGCATCCATCGCTGAGACTCCACCACGCCATTCCGC
CGAGACCCGCTG-CGTCGATACGGTAGATGCAACACTGCTCCACCTCTTCCCTCCAGCCAGC-------------AATGA
TGCACCATGAGGGAGGACGACACTGAAGGCACTGCCACCATCTGATCTAGGAGTCCCAGATCTAGGGTTTC
>chr5A_235
TGCGTCTTG-----------------------------------------------------------------------
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--CAAATTCTACCACCAGAGCTCGGTTCACTCGCGACTTTTGCTAGCGTTTCCGGGCAGGCTCCCCACGTCAAGACGCAC
ATGCGCGCGCGCCAAGCTGTGTAGTGTAACGTGCGCGCACTCATGCGCGCAGCTAGGCGACGCCCCAAAGCACCGGCATT
TCAGCGCCGCCCTCAGTAATCCGTATGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGA
AAATCATACAGTAGAAAATTTTGGGGTCAGAGAACGCCCGGATCTGTG--------------------------------
-----------------------------TGTTGCACAGCTAGTGGTAACACCTAGTCTAGTCTTATACTG---------
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-----------------------------------------------------------TGATCAGATTAGTAATCCACC
ATGCAAGTGGGGA--AGAGAG----------------AGAGAGAGAGAAGACTAAGCAAGATCGAATCTGTCCGGCCTCA
TGTGCAGCAAAAAAGGTTTAATG-----GATGGGATGAACATGGCATGAGTATCTAGCTAGCATATGTCGATGCATTGCT
TTTGACGCATGTT-----CTGCAATACTTGG-CTTTTCCATCCAGCTTTAGCTCGACCATTTTCACGGTATAAAATGGTG
AAGACTTCTCGGAATCCACAGCTATGGTCTATAAATACGTCCTCAGATCCATCTCACCCTGCCCACTGCCCAGCCCAGCA
GCCGCTGCTTCACTA----------GCCAGTGTCTTCTCTTTTGGCAACTCAACTCGCTTGAGCGAAATGGCCCTGGCTG
GTAGGCTGCTCGTCCTCCTCGCCGTCGCTCTTCTCGCCGTGTCCATCATCGCCGAGCACAAGGTGAGATCTCTGCTGATC
--CGCGGTACCCAGGACGACG-----GA----GAAGCCAAACTGTTGGTCTTGCTTGGGATGCTTATTACATCGCATATT
TTGTGATCAGGTGTTTGCCTCAGGAACCGAAGAGCATGAGGATAATGTGTACCGAGTGAGCAAGGTATATGTTTCCACG-
-GCA-TCTGTTGCACATTTTTAAAGATA-TTTTGGGGATAGATCTGTTACTGATCGTGTGTGTTCTC-------CTCCTT
TCCGAATTCTTTCTTCAGGGAGGACAGGGCAGTCTCAAGATATACCGTGAGTTACCCTTCCCTGCTCATATCTG------
-------------------------------------------------------AATCTGAATCTGCTGGTTTCGCCTG
AAATGAAATGAAATGAAATGTAATGTGAGTTGGACTGGTTGTTGATCCTGCGGTGCATGGATTGCAGAGTGCAAGCCGGC
GTGCGAGTACCGGTGCAGCGACACCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCAACACGTGCCTGT
GCGTGCCGTCGGGCCTCTACGGCCACAAGTACGAGTGCGGCTGCTACAACGACTGGAAGACCAAGGAGGGACGCCCCAAG
TGCCCCTAGTTACAAGATTTGGTCTTCTGACGGCCCGCCGTTGATGCCGTTGCTCGATCAGCCTAGCCGGTA-------G
TTACATG---TAACAGGTGTAAG--------------------AAGAACTCGATCGAGATCTGGGTTGTCTGTA----GT
ATGTCGCGTGCGTCCGCCTCTTCTCTGCGACTCCAGAGGGCGGCGCACGCGGTTGTATCGTGGGATTCGCCGCTCGGTTC
ACGACCTGGAACACGC---GTAAATCACAGTTTGTTGCATGTTGGAGGAGGCACGCCGTCGCAGTTGTTGTAGCACCACA
---------------------------CCAGAGTGGGGCGCC-------GGTCGTGTTGGTTGTTCTGCGCTCTGCACTC
GAGATGACGCCGGTCCACCGAGCCCCGGCATGAGAGGAAACCAGGGCAACTTGCCGGAACCCCCGCCTCGAAACGAGATG
CGCCGGGGGGCACTGCCCTCGAAGAGCGGCCTTTCTACG--AAAAAAAATGGTTAAGACCATCGGCCTATGCATCCAATG
ATGCGTACACCCATCTTTATCGATAAAGTCTGACA-AACAAATACATA--GATCAATCTAAA------------------
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>chr5D_241
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TACAAATTCTACCTCGAGAGCTCGGCTCAGTCGCGACTTTTGCTAGCGTTTCCGGGCAAGCTCCCCACGTGAAGGAGCAC
ATGCGTTCACGCCAAGCCGTGTAGTGTAACGTGCACCCACTCATGCACGCAGCTAGGCGACGCCCCAAAGCACCGGCATT
TCAGCGCTGCCCTCCGTAATCCGGATGGGGCTCTAGGCCTAATTAGCTAGAATATGATTCTGCGCCGATCTGAGGCGCGA
AAATAA-----TAGACAATTCTGGGGTCAGAGAACGCCCAGATCTGTGCCCGGGACCGGACGTCAAATTCCGTCAATGCC
AGAGCCGTC-GCATGCATCGCATTGCGTGTGTTGCACAGCTAGCACT-ACTCCTAGTCTAGCCTTATACTACTCTGATCC
TGTGTTTTAAATTTCGGCCGAGAAAAACGGATTTCGGCCGAATTTCGGCCATCTCGGCCTGGGGCGAAATCTATCCTTGG
CCGAAATTGGTCAAATTTGACAAATTTTGATCAAAATTGAGTCAAATTTCAGTCAAATTCTGGTCAAATTTTGGCCGAAA
TTCAGCCATCTCGGCCTAGGGCAAAAAAAATTCTCAAACCCAAAATCAAAACACAGCTCTGATCAGATTAGTAATCCACC
ATGCAAGTGGGGA--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATTAAGCAAGATCGAATCTGTCCGGCCTCA
TATGCAGCAAAAAAGGTTTAATA-----GATGGGATGAACATGCCATGAGTATCTAGCTAGCATATGTCGATGCATTGCT
TTTGACGCATGTTGGGCTCTGCAATACCTCGCCTTTTCCATCCAGCTTTAGCTCGACCATTTTCACGGTATAAAATGT--
-------------------ACCTATTGCCTATAAATACGTCCTCAGATCCATCTCACT-------CTGCCCAGCCCACAA
GCCGCTGCTTCACTACACACCACCACTTC---TCTTCTCTTTTGGCAACCCAGCTCGCTTCAGCAAAATGGCCCTGGCTG
GAAGGCTGCTCGTCCTCCTCGCCGTCGCGCTTCTCGCCGTCTC---CATCGCGGAGCACAAGGTGAGATCTCTGGTTGTG
GTCATCCGGCGGGCAGTACCCACAAGGTGAGGGAAGCCAGATTGCTCGGCTTGCTTGGGATGC---TTACATTGCATATT
CTGTGATCAGGTGTTTGCCTCAGGAGCCGCAGAGCACGAGGATAATGTGTACCGAGTGAGCAAGGTCCTTATTTCCTCCT
CGCCTTGCGATGCACATTTTTAAAGAGATTTTTGCGGGTAGATCTGTTGCTGATACGTATTTTTTTTTTCTTTTCTCCTT
TCTGAGTTGTTTCTTCAGGGAGGACAGGGCAGCCTCCAGCAATACCGTGAGTCGTCGTCACCCTTTCTATTTCTACAAAA
ATCTTGAGAGTGCATGAAACCGAGCGCATGTCATGTAGAGTACTCCACTATATAAAAGCTGAATCTGCTGGTTTCGCCTG
AAATGAAAATGTGATG--------------------GGTTGTTGATGTTGCGGTGCATGAACTGCAGAGTGCAAGCCGGC
GTGCGAGTACCGGTGCAGCGACACCAAGTACAGGAAGCCGTGCCTCTTCTTCTGCAACAAGTGCTGCGACACCTGCCTGT
GCGTGCCGTCGGGCTTCTACGGCCACAAGGACGAGTGCGCCTGCTACAACGACTGGAAGACCAAGGAGGGGCGCCCCAAG
TGCCCCTAGTTGCAAGAAGATTCTGCCT-------CGCCGTTGAAGCCATTGCTCGATCGGCCAGGCCGGAGCCGGGCGG
TTACATGGAGTAGCAGGTTGGCCGCTTCTGGCGACGCCGGTGTAAGAACTCGATCGAGTTCTGGGTTGT-TGTAGTACGT
ATGTCGCATGCGTCCGCCTCTTCTCTGCGGTTCCAGAGGGCGGCGCACGCGGTTGTATCGTGGGATTCGCCACTCGATTC
ACGGCCTGGAACACGGTTAGTAAATCACAGTTTGTTGCATGTTGGAGGAGGCACGCCGACGCAGGTGTTGTAGCACCACA
ACGCGCGTAGTATATCGTGTACTCCTACCTGAGTGGGGCGCCGGTCGATGGTCGTGTTGGTTGTTCTGCGCTCTGCACTC
GAGATGACGCCGGTCCACCGAGCCCGGGCATGAG-GGAAACGAGGGCAACTTGCCGGAACCCCCGCCTCGAAACGAGATG
CGCCGGTGGGCACTGCCCTCAAAGAGCGACCTTTTCAAGAAAAGAAAAATGTTTGAAACCCTCGCCTCTGCATT-CAAGG
ACGCACACATCCATCTTTATCAATAAGGTCTGACAAGGCAAATACATATCGATTAACCTAAAGTCATCTTTCTAGTGGTG
TTTGTCGCTACACCTATAAATTTGATGCTCTGGCCTGACCTCAGACCAACACACATGGTCTAATCTGGTGGCCTCACCAA
GCCGTCTCACGGTGAACCGAGAGCGCCAACCGGTCTAGCAGACTCTTAGCGCGCACCGCATGCCCCG-CTCTAGAATCCG
CTGCCAACATCTTCCGTCGTCCTAGCTTCGGGAGGGATCAACACATTGTCCTTGCCAGGCCCAACCGTTGTCGATGCCA-
----------AACAACGCCACGATCGTGCGTGCGTCCATCAACACGCATCCATCGCCGAGACTCCACTACGCCATTCCGT
CGAGACCCGCCGTCGTTGATGCGGTAGATGCAAGACCGCTTCACCTCTTGGCCCTCCGTCCTGCAGCTGCTTCAAAACGA
TGCACCAGGAGGGAGGACGACACTGAAAGCAGTGCCATCATCTGATTTGGGAGACCCACAACTAGGGTTTC
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------------------S--------------------------------------------------S----
-----S--------------------------------------------------------------------------
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--------------------------------------------------------S-----S-----------------
---------S-------------------------S-------------S------------------------------
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-----------SSSS-----------------------------------------------------------------
-----------------------SSSSS----------------------------------------------------
---------------------------------------S---------------------------------------S
--S------S------S-----------------------------------S---------------------------
------------------SS---SS-----S----------------S------S-------------------------
----------------------------------S--------------------S------------------------
--------S---------SS---S-S----------------------------------------------S-------
------------------S-----S--S-------------------------------------------S--------
---S-----------S----S--------------------------------------------S--------------
-------------------------------S-----------------------S---------------S--------
----------------------------------------------------------------------S---------
-S-----------S----------------------S----------------S--------------------------
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------------------------------------------------------------------------S-------
--------------S-----------------------------------------------------------------
----------------------------S---------------------------------------------------
----------------------------------------------------------------S-S-------------
------------------------S--------------S------------------------------------S---
-SS-S-------S--------S-----SS----------------------------------------S-------S--
--------------------------------------------------------------------S-----------
--------------------------------------SS---------S---S-------S-----------------S
---------S-----------------S-----------------S-----------------S------SSSS-S-S--
-S----S---------S--S------SS-S--S---S------S-----------SSS---------S------------
-----S---S---S-S--------S-S---S------------SS----S-SS----S-------SSS----S--S---S
-----S------------------S-S----------S----------S-----S---------SS--S-----S-S--S
SSSSSSSSSS----S-S----S---S--------S---------S-----------S----------S-----------S
----------S-----S---S------------S--S---S--------SS-S-SSSSSSSS---------------S--
-------S-------------------S---S-----S--------S-S----S----S-S----------
>forward_1231
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-----------ACTACACTTCACTGGCCAGC-------------------------------------------------
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>reverse_2772
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---------------------------------------------------TACACCACATGCCCACACTC---------
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