>input_sequence_72605
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----------------------ATGGC------TCGG---------CTGGCCCTCCTCTCCGTCTTCTTCTTTTTGCTCA
TCATCACCGGCCTTGTGGCTGCCGCTCCGTCCAGTGGGAAG---GTCGGCAAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCCGACTCGCCACCGGGGGAGATGATCACGATCTCAACGCACTACGTCCGCGAGGACGGGGTGCACGACAGCCACGT
CCATGTCGACTGCGACGACCACGAGCCGTATGC--------------------------TCTCTCTCTCTCTCTC-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCTCTCTCTCTCTCT
C---CC----------------------CGACTCCGACGAGCCGCCGCGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GATTTACCTTGATTTT----AATTCTAGCTAATCTTGCGGTTGATCTCCAGCCAGC-
----TCGGTTCCGCCGCAAAATATCTTGTGAGGAGCCTGGAGAAGATACGAGATGAGGAGGCGTCTCCATCCGAGGTATC
GTACATTTTGCCCCTCCCTATCT-A----C--CCATCGGTTCATTTCTCAGAACTCAGAACGCAATGCAAAC-TGCTCAC
ATTTGCCACCTTGTTTCTGGCTTGTAGGCCTAC---AA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGGACGTTCTCTTTGAATTGGTCTCAGGGAAA----ATTAGGCGCGA
TTTACT---TTATTATCGTAGTATTGTCTCTGCAAGGAGCTCCTTCGCTCGTGCGAACAATCAATCGGTCTACTGA----
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---------------
>chr1D_1_TraesCS1D01G062000
TACAAGCTGTATGGGGTTTTGGATCATGCATGTATGTCTGCTTAAACATCATTTATACATGACACTCCAAAACCTTTCGA
AAGGACATGAATCGTAAACGACGTTCAGATCACAAATGACATGCATGACTCGTGCATGCATTTTATGTTAGGCATATCGA
ACTTCATTGTCGTGTAAATTAAATTAGTGGGTTTCATGAAATATGAACAAAGGGGAGGTGTAGAGGAAAAAGGAGAGGGA
GGACTGGCTTACAGCAAACAAAAAAAAGTGAGCAATATCTACAAACTGCCTTTTGCTGTGAAACAACAGGTCTGTGTCGA
CTTTCAAGTGTACTGCCGATGCGCAAACAGAAAGCACATGCATTTATTCAACACACACTTTCCAGAAAGAAAATCGACAA
GCTTGCAGCGTCAAACTGTCAACTTTTCAGACAGTTGAGGCAAACGGCTCCATGATCATAAGCTGATGACACCCACGTTG
AACTAGCACTAGCAAGTACTCCCTCCGTTCCAAAATACTTATCGTGGTTTTAGTTTACAAATTTGAACTAAAACCACGAC
AAGTATTTTGGAACGGAGGGAGTAGCACACACTGCACCCACGTTGAACTAGCACTAGCAAGTACGCACTGACACTACGGC
CGAGGAGATCAGA-------------------------------------------------------------------
---------TTGACAGTTGAGTGGCACACACTGCGTGAGTGCCCACGCAGAGTTACACTCAGAAACAAGAACTCAGCTCT
TGTACATTAGAAACCTAGCTAATCCATTCGTCTTTTTTTTTTTCCAGGGTTAAGACAGAGG-CCGGCCGGGGTTATCCCA
TTTTCGAAAAAAAGAAAGAAATAAAAGAACACCAGTGTCTCT-----AAAACCATACTGGCAACAGTACGTAACTC-GCA
-----------GCAGTTCACACAGCTCTTCTCT----TACCTGTCC--ACCATATATGCGT-------------GCTTGG
CCGGCCACATTTCGTTCACCCAGTTGAAGTAGCAAG-----------------CAG----TAGGTTCTGTGCACTCCTCA
GCCCGA--------AGTCTGCCATGGC------TCGG---------CTGGCCCTCCTCTCCGTCTTCTTCTTTTTGCTCA
TCATCACCGGCCTTGTGGCTGCCGCTCCGTCCAGTGGGAAG---GTCGGCAAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCCGACTCGCCACCGGGGGAGATGATCACGATCTCAACGCACTACGTCCGCGAGGACGGGGTGCACGACAGCCACGT
CCATGTCGACTGCGACGACCACGAGCCGTATGC--------------------------TCTCTCTCTCTCTCTC-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCTCTCTCTCTCTCT
C---CC----------------------CGACTCCGACGAGCCGCCGCGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GATTTACCTTGATTTT----AATTCTAGCTAATCTTGCGGTTGATCTCCAGCCAGC-
----TCGGTTCCGCCGCAAAATATCTTGTGAGGAGCCTGGAGAAGATACGAGATGAGGAGGCGTCTCCATCCGAGGTATC
GTACATTTTGCCCCTCCCTATCT-A----C--CCATCGGTTCATTTCTCAGAACTCAGAACGCAATGCAAAC-TGCTCAC
ATTTGCCACCTTGTTTCTGGCTTGTAGGCCTAC---AA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGGACGTTCTCTTTGAATTGGTCTCAGGGAAA----ATTAGGCGCGA
TTTACT---TTATTATCGTAGTATTGTCTCTGCAAGGAGCTCCTTCGCTCGTGCGAACAATCAATCGGTCTACTGACATT
----------------------------GGGTGAAGAAATCTTCTGCATTCAGTCTGTG----------GAGTGCCCATT
C--GGGAAGCGTATCCTAT-----GGATCATTATTTAGGCTGTAGTGATGTGGTGGCGTG--CACTGTGCAGGGTGCTTT
AGTACATCTGCCTTCAGTTATCTC-GTGTAC-CTTGGATTATGTAGCTTAACATATCTTCCGTGTTGAAGAAAGAAAACA
TCTTCTTGTTCTTCTATTTA----TGTATTTCTGATC---------AATTTCTGTGAAGTGGAAGATCTTTATTGTGTTG
TAC-----------------------------------------------------------------------------
----------------------------------GCACCTAATAACACCATGAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------GAAAGTGTCGGCTTATTATTTACAGT--TAATTTTTCTTAAGTCAGACCTTAGGAAT
AGATTCATTAAA-AACATAGGAGAGAGTTGTCCGGTTTATTTG----AAATCAGGTAAAAACCGTTACAACTCACCTGCA
AGACGTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATCACGGCCGATCTAGCTACCCACCAGAAG
ACCCACACTGATCGCCGAACAGTGGAACACC--GTCGAGGTTGCTTGCAAAGTGTCATTGTGATCACTTCTTCCCGAACA
AGCGAC--------------------------------------------------------------------------
--------------TCCAACTCCACCAAAGACGACGGACCAAAAGCACTCCGAAGAAACAACACACGAAAACGTTGTAGA
ACTATGCCAAACAATCAGCCAAACACGTTGAGGATTAGGCAACTCCGACTTCAACAACTATCCCC---------------
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-----ACAGGAGAAAGAAGCGAGTTATTTACTCGAAACCACCACACTTGGGGCTAGGGTAACAACTTGGTACCACATTCA
AGCCAGGGCACAAATAACCACCAGGAATGCGCCTAATGTGTAACGCGAAGCACTGATTCTGGAATTTAGTTGCAAAAACA
GCGAAACCGACAGGTGAGGCCCGCCTGCCGGGCTGATGTGGTGTGCTTATGTGAACAATTTGCTGAGTTGGACGAGGGTC
CCGCCTGTCAATGACTCGAGTGTTCATCTATTTTCCATTTTTTCTTTTTCTCCCGGACATTTCAACAAATAGGTAATGGG
CACTTATCTACGCAC
>chr1B_1
TACAAGGTGTATGGGGTTTTGGATCATG----TATGTCTGCCTAAACATCATTTATAAATGACACTCCAAAACCTTTCGA
AAGGACATGAATCATAAACGATGTTCAGATCACTA----------------------GCATTTTATGTTCGATATGAATG
AAGTAGCACCACGCAAAGTTAGTACACGCAGAAACAAGAAACTCTGTTCTTCTGCGTTCACGCGTTTATGTATTTATAAC
AGATGCACGGCACGCACCGCGTGGGAAGGGCACAGAACCATGATGGACCTTCTGCGTTCACGGTCACAC------GTCTA
CTTTGATGTTCAATGGTGATTTTGCCTCTGCTCGGGA-------------------------------------------
--------------------------------AGTTGAGGCAAGCGGCTCTATGACCATAAGCTGATGACACCCACGTTG
AAC--------------------------------GCACATGATCATCCTACAGCCT-----------------------
----------------------------------------------------------------GCACTGACACTACGGC
CGAGTAGATCAGA-------------------------------------------------------------------
---------TTGGCAGTTGAGTGGCACACACTGCGTGAGTGTCCACAAAAAGTTACACGCGGAAACAAGAACTCAGCCCT
TGTACATTAGAAATCTA----ATCCATTTCTCTTTTTCATTTTCCAGGGTTAAGACAGAGG-----TCTGGGCTATCCCC
TTTTCGAAAAA-----------AAAAGAACGCCAATGTCTCT-----AAAACCATACTGGCAACAGTACGTAACTC-GCA
-----------GCAGTTCACACAGCTCTGCTCT----TACCTGTCC--ACCATATATGCGT-------------GCTTGA
CCGGCCACATTTCGTTCACGCAGTTGAAGTAGCAAG-----------------CAGCAGCTAGGTTCTGTGAGCTCCTCA
GCCCGA--------AGTCTGCCATGGC------TCGG---------CTCACCCTCCTCTCCGTCTTCTTCTTTCTGCTCA
TCTTCCCCGGCCTCGTGGCTGCCGATCCGTCCGGAGGGAAGA---TCGGCAAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCCGACTCGCCACCGGGGGAGATGATCACGATCTCAATGCACTATGTTCGCGAGGACGGGGTGCACGACAGCCACAT
CCATCTCGACTGCCACGACCACGAACCGTATGCCTCTCTCTCTCTCTCT---CTCTCTCTCTCTCTCTCTCTCTC-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCTCTCTCTCTCTCT
CTTCCC----------------------CGACTCCGACGAGCCGTG----------------------------------
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--------------------------------------------------------------------------------
--------------------------------TGATTTA----ATTTCTAGCTAATCTTGCGGTTGATCTCCAGCCAGC-
----TCGGTTCCGCCGCAAAATACCTTGTCAGGAGCCTCGAGAAGATACAAGATGAGGAGGCGTCTCTATCCAAGGTAAC
ACACATTTTGCCCCTCCCTATCT-A----T--CGATCGGTTCATTTCTCAGAAGTCGGAACGCAACGCAAAC-TGCTCAC
ATTTGCCACCTTGTTTCTGGCTTGTAGGCCTACATGAA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGGACGTCCTCTTTGAATTGGTCTCAGGGAAA----ATTAGGCGCGA
TTTACT---TTATTATCATAGCATTGTCTCTGCAAGGAGCTCCTTCGCTCGTGCGAACAATCACTCGGTCTACTGACATT
----------------------------GGGTGAAGAAATCCTCTGCATTCAGTCTGTG----------GAGTGCCCATT
C--GGGAAGCGTATCCTAT-----GAATCATTATTTAGGCTGTAGTGATGTGGTAGCGTG--CACTATGCAGGGTGTTGG
AGTACATCTGCCTTCAGTTATCTC-GAGTAG-CTTGGATTCTGTAGCTTAACATATCTTCCGTGTTGGAGAAAGAGAACA
TCGTCTTGTTCTTCTATTTATTTATGTATTTCTGATC---------A-ATTTTGTGAAGTGGAGGATCTTTATTGTGTTG
TACAAACTGA----TTAACAAAGGGTAACTGCACAGGTATAAAA-----------------------AAGAAGTAAAAAA
AGTAGAGAGGGAAACAAGCAAGGAACCTGTGTACGCAGCAAATAACACCATGAAC-------------------------
--------------------------------------------------------------------------------
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-----------------------GAAAGTGTTGGCTTTTTATTTACGTG--TAATTTTTCTTAAGTCAGACCTCAGGAAT
AGATTCATTAAA-AACATAGGAGAAAGATGTCCGGTTAATTTG----AAATCGGATAAAAACCGTTACAACTCACCCGTA
AGAAGTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATCACGGTCGATCTCGCTACCCAGCAGAAG
ACGCACACTCATCGCCGAATAGTGGAACGCCGAGTCGAGGTTGCTTGCAAAGTGTCATTGTGGTCACTTCTTACCGAACA
AGTGAC--------------------------------------------------------------------------
--------------TTCAAGTCCACCACAGATGACCAACCAAAAGCACTCCGAACAAACAACACACAAGAACGTTGTAGA
TCTATGCCAAACAATCAGCCAA-CACGTTGAGGACTAGGCAACTCCAACTTCAACAACGCTCCCC---------------
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-----GCATGAGAAAGAAGC------------------------------------------------------------
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---------------
>chr1A_1
GCTGA---------------------------------------------------------------------------
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------------------------------------------------------------------TGACACCCACGTTG
AACTAGCACTTGCAAGAGCTGGTAGCAGCTGGTACATGCATGATCCCGCCCTGCA-------------------------
----------------------------------------------------------------------ACACTACGGC
TGAGTAGATTGGGGCACGCACTGCACTGATGCTGCTGCTGCCTGTGGTAATTCATTTTGGGCACATGCACATGCACTGCT
GGTATTCGTTTGGCAGTTGAGTGGCGCGCACTGCGTGGCTGGTCATACAAAGTTACACGCAGCAACAAGAGCCCTAAAAT
CACAATTGGGATCCACGGT-------------------------------------------------------------
-------------------------AGAACACAAACGTCCCTCCCTGAAACCCATAGTGGTAGTGGGAACTATGCATCCG
CGGTAGGTCACGCAGCTCACGCGCATCTGCTCT----TACCTATCCGGTCCATATATGCATGCTTGTCTCGTCCGCTTGG
CCGGCCACAGTTAGTTCACGCAGTTGAAGTAGC-------------------------------TTGTGTGCATTCCTCA
GTCCGTCCGTCTCTAGTGTGCCATGGC------TCGGCTCTACCACCTCACCTTCCTCTCCGTCTTCTTCTAC---CTCC
TCCTCACCGGCCTCGTGGCTGCCGATCCGTCTGGAGGGAAGAAGGTCGGCAAGAAGGTGATCATGACGGTGCGGTACCCG
GCTGCCGACT------CGGGGGAGAAGATCACGATCTCGACGCGCCTCATCGGTGAGGGCGGGGTCGGCGACAGCCACTT
CCATCTCGACGGCGACGACTACGAACCGTATGCCTCTCTCTCTCTCTCG---CTCTCTCTTTCTCTCTCTCTCTC-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCTCTCTCTCTCTCT
C---CAACTCATCGTCACAAAGCACACACTCGAGCC-----------------------------AGCCGTGTGATTTAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTTGCTTGATTTAATAAATTTCTGGCTAAGCTTGCGATCGATCTTCACTTGTTC
AGCATCATTTTCGCCACGAAAAACCTTGTCTCG-GCCTGGAGAAGGTGGGAGATCCGCAGGCCAATCTATCCGAGGTAAC
GCACATTTTGCCCCTCCCTATCTCA----T--CCGTTGGTTCAGATTTCAGATCGCA------AATGTAAGC-TACTGAC
CTTTGCCTAATTGTTTCTCAGCTGTAGAAGCACGTACTTGACGTGAGTGAGCTTTCACGGGGCTCACTGCATGCTCAGTG
GTGGTTGCATGCCCAGTCAGTGGAGATTGGCAATGGAGCTCCTCTTTTCTTTCCTCTCAGCGAGAATACATTAGGCGCTT
TTTATT---TTGTTGTAGT-------------------------------------------------------------
-------------------------------------------------------------------------GCCCATT
C--GGGGAGCGTGTCCGGT-----GGCCTATTATGTAGGC----------------------------------------
------------------------TGTGTAT-CTTGGATTATGTAATCTTTTGG---------GTTCGAGAAAGAAAATA
TTTCGTTGTTCATCTATTTGTTTTTCTTC-----------TGCTCAA-TTTTCGTTAAGTCGAGGACCTCTGTTGTGCTT
TAGGATCAACAGATTAAACAGAGCATAGCTGCACAACTATAAAGAAATACAAATGGGAAGGACATAGAAAAATGTAAGAA
AACAAAGAGGGATACGAGCGAGGAACCGATTGGGGTAGAAAACTGGAGGCTACATTAGCTTTATTTTTTCAAAAAGAAGG
ATTACCTCACGCAGCCATTTTATTAAACAAAGTAGCACCAAAGTACATAGTTCAATACAAATTCTCAAGCAAAGCTGAAT
AAAATGAAGAAAAAAAACTGACACAGCTAGCCGAAAATATGACTAGATTACTAGACACCTATCCTACTGTTGGACCGTCA
TTCAAATCGGTTAAAAGTATCCCGTGCTACCGTCTCTCAACGGTTGCACATGTAGGCCATATACTCCTTGACTTCCGCAT
GATTGAGTAACAACCACATATGGATCCATCCATACGCCCAAGAGATGACCTCGTACATTAGCTAATAACGCCTCGTACGC
TGGCTAGTAATTAATGCTACCATGACAGAGTCAACTTATTATTCACATATTAT-TTTTTCTTAAGTCGAACCTGAGGACT
CGTTTTGTTAAACAAAATAGAAGAGAGATGTCCGGTTAATTTGTGGAAAAGCGGGTAGAAAATGTTAGAACAAATTGACG
TGGCATCCCGCCTCCACCCTGCCTCACCTCCGGCAAGCTTCTATCCATGCCTCGCCATGGTGTCCCTGTCTCCAGCTCGG
GGTTCGATCCGTTTAATCCAGTCAGAGGTCAAAACGAAAAGGCTGCCCCACCTGCACCCGTCAACCTCGAGCACGCTCCG
CCTTGGACGTTGTTGTGAGATGCATCACCGCCAGCTCTGGCTTTGCTTCCTTCTCGGCCTTGCTAGCTATTGTCCCCTCG
CCTTGCTGCCACTCACCGTGGCGCCCCTAGCTCGGCCTTGGGGCTTCGCTCCTCTCCCATCAAAATTCGACTCACACAGT
TTGTAATCTTAGCCAACCGAGAATTAGCAAAATCAAAATTCATTTGGTTATAGAAAATATGAATGCACAACCTTTTTTAG
CGTGAAACAAAGGATCTGTTTCAACTTTGTACCGACAAGCAAAAGGAATCCATATGCATTTAA-----------------
-------CACACACTTTGACATAGAAGCTGAGAACCAGGCCACTAGCAAGCTACTGAATAATGGAAGGTTTTATTGCGTT
GATCTTCTGGACCAGGCTAGTGTCTGTTTCCTGCTCGCTGCTTTGTTGTTTGCACTTGTTCTTCTGGAAAAGATTGTGAT
CGTATCGAAGGTTGTATCCATCGCAGCTACTCACATGTTTTGAGCAAGCGATGTATAATGATGCTTTACCTGGCTGCTTG
ACTATCTTTAATAAAAGTCAGGCGGGGAAAACCCCTATTTTTTAAAAGAAAAATCATGTGGAGGTACCATATGGATTGTT
TGACCGATCAAATAGATGAAATATGAGCTATACGATCTGACAGTGACCTGACAGTGACCATATAATCACCTCAACACGTA
TATAATGACCGTATTGACTGTATTCTGAAGTACAATGACCAAAATGAGCGTACACGACAAGTTCAATGACCACCAGTACA
TTTTACTCTTGAAAATATGAACAACCCTTTTTAGCATTGACACAAAGAAACTGTATCAACTTTGTACCGAGCAAACAGAA
GCCACATGCGTTCAACACACACTTTGACCCAGAAAAGAGAACCCGGCCACCAGCAACCGTACGTCTAGTAGACGTTTCTT
ATTGTCCTGAAAAATAATTTGGTTATTGAAAATATGAATGAACAACCCTTTTTAGCATGAAACAAAGAATCTCTGTTTCA
ACTTTGTACCGATGAGCAAACAGAAGCCACATGCGTTCAACACACAGTTTGACCGAGAAACGAGAACCCGGCCACCAGCA
AGCAACGGTCTGGTAGACGGTACTACTTGTCCTGAGGACGCAGTTGAGGCAGACGCTCCATGCATGCATGAGTTGATGGA
TCACACCAAAGATGAAGTAGCAGCGGCGACTCGTACGTGCATGATCGGTCAGTACAAGGTGTGTGGGGTTTTGGATCATG
TATGTCTGCTTAAACATCACTTATACATGACACTCCAAAACCTTTCAAAAAAGGACACGAATCGTAAAGGACGTGCAGAC
CACTAGCATTTTATGTTAGACATATCGAACTGCATTGTCGTGTAAATTTAGTGGGGTTCATGAAATATGAACAAAGGGAA
AGAGTACAGGAAAAAGAAGGAGTGGGAGGACTGGCTTACATCAAAGAAAAAAAAGAAGTGAGAAATATCTACAAACTGCC
ATCTGCTGTGAAACAACAGGTCTGTGTCGACTTTCAAGTGTACAGCCGATGAGCAAACAGAAAGCACATGCATTGATTCA
ACACACACTTTGTCAGACAGAGAATCCACAAGGCTGCAGCGTCAAACTGTCACCACTGGGCTTGTTCAGACAGTTGATCC
AAACGGCTCCATACATGATCATAAGCTGATGGCAC---------------------------------------------
---------------
>chr1A_460
--------------------------------------------------------------------------------
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-----------------------------------------------------------AAGCGGACGACACCCACGTTG
AACTAGCACTAGCAAGTAC----AGCAGCTTGCCCGCACATGATCACCCTGCAGCCT-----------------------
----------------------------------------------------------------GCGCTCACACTACGGC
CGAGGAGATCAGA-------------------------------------------------------------------
---------TTGGCAGTTGAGTGGCACACACTGCGTGAGTGCCTACACATAGTGCCCACACAA-----------AGCTCT
TGTACATTAGAAATCTA----ATCCATTTCTCTTTTTTATTTTCCAGAGTTAAGACAGAGGCCGGGTCAGGGTTATGCCC
CTTTCCAAAAAAGGAAAAAGA-AAAAGAACACCAATGTCTGT-----AAAACCATACTGGCAACAGTACCTACATCAGCA
-----------GCAGTTCACACAGTGTT------------CTGTCC--ACCATATATGCAT-------------GCTTGG
CCGGCCACATTTCGTTCACCCAGTTGAAGTAGCAAG-----------------CAG----TAGGTTCTGTGCACATCTCA
GCCCGA--------AGTCTGCCATGGC------TCGGCTCTACCACCTCACCCTCCTCTCCGTCTTCTT---TCTGCTCA
TCATCACCGGCCTCGTGGCTGCCGATCCGTCCGGAGGGAAG---GTCGGCAAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCGGACTCGCCGCCGGGGGGGATGATCACGATCTCAACGCACTACGTCCGCGAGGATGGGGTGCACGACAGCCACGT
CCATCTCGACTGCGACCACCACGAGCCGTATGCCCC--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTCTCTCT
C---TG----------------------TGACTCCGACGAGCCGCCGTTTTAAATAGTTTTAAATAGCCGCGTGATTTAC
CCATAGTTTTAAATAGCCGGCTATAGCCTCGCTATAGCTCCACTATAGCTGTTTGAGGGTGTTGCCGCTAAATGATTTCA
TGTACAATTTGCCGCTATAGCTCCGCTATAGCCCGCTATAGCCCAGCTATAGCTGTTTTTTAGGGCCGCCACTAAATGCC
TTAGCCCGCTATTTAAAACATTGGATTTACCTTGATTTT----ATTTCTAGCTAATCTTGCTGTTAATCTCCAGCCAGC-
----TCGGTTCGGCCGCAAAATACCTTGTCAGGAGCCTGGAGAAGATACGAGATGAGGAGGCGTCTCCATCCGAGGTAAC
GTACATTTTGCCCCTCCCTATCT-A----TATCCATCGGT-------TCAGAAGTCAGAACGCAATGCAAAC-TGCTCAC
ATTTGCCACCTTGTTTCTGGCTTGTAGGCCTAC---AA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGGACGTCCTCTTTGAATTGGTCTCAGGGAAA----ATTAGGCGCGA
TTTACT---TTATTATCGTAGCATTGTCTCTGCAAGGAGCTCGTTCGCTCGTGCGAACAATCACTCGGTCTTCTGACATT
----------------------------GGGTGAAGAA------------CAGTTTGTG----------GAGTGCCCATT
C--GGGAAGCGTATCCTAT-----GGATCATTATTTAGGCTGTAGTGATGTGGTAGCGTG--CACTGTGCAGGGTGCTGG
AGTACATCTGCCTTCAGTTATCTC-GTGTAG-CTTGGATTCTGTAGCTTAAAATATCTACCGTGTTCGTGAAAGAAAACA
TCTTCTTGTTCTTCTGTTTA----TGTATTTCTGATCAGTTTCTGAC-TTTCTGTGAAGTGGAGGGTCTTTATTGTGTTG
TACAAACTGA----TTAATAGAGGGTAACTGCACAGGTATAAGA-----------------------AAGACGTAAAGAA
GT---AGAGGGAAACAAGCAAGGAAACTGTGCACGCACCTAATAACACCATGAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAAGTGTCGGCTTATTATTTACATATATAATTTTTCTTAAGTCAGACCTTAGGAAT
AGATTCATTAAA-AACATAGGAGAGAGATGTCGGATTAATTTG----ACATCGGGTAAAAACCGTTACAACTCACCTGCA
AGATGTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATCACGGCCGATCTGGCTACCCACCAGAAG
ACCTACACTCATCGCCGAACAGTGGAACAATATCA--AGGTTGCTTGCAAAGTGTCATTGTGGTCACTTCTTCCCGAGCG
AGCGAC--------------------------------------------------------------------------
--------------TCCGATTCCACCACATATGACCAACCAAAAGCACTCCGAACAAGAAACACATGAGAACGTTGTACA
TCTATGCCAAACAATCAGCCAA-CACATTGAGGACTAGGCAACTCTGACTTCAACAACGATCCCC---------------
--------------------------------------------------------------------------------
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-----ACAGGAGAAAGAAGC------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>chr1A_828
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------AAGAACACCAATGTCTCT-----AAAACCATACTGGCAACTGTACGTACATCAGCA
-----------GTAGTTCACAA--CTCTGCTCTTACCTACCTATCC--TCCATATATGCAT-------------GTTTGG
CCGGCCACATTTCGCTCACGCAGTTGAAGTAGCAACCAGGGCAACCAGCCAACCAG----TAGGTTCTGTGCACTCCTCA
GCCCCA--------AGTCTGCCATGGCTCGGCTTCGGCTCTACCACCTGACCCTCCTCTCCGTCTTCTTCTTC---CTGA
CCCTCACCGGCCTCGAGGCTGCCGGTCCGTCCGGAGGG------------AAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCCGACTCGCCGCCGGGGGAGAATATCACGATCTCGACGCACTACGTCGGCGATGACGGGGTGGGCGACAGCCACAT
CCATCTCGACTGCGACGACCACGAGCCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTAGCTTGATTTG----ATTTCTAGCTAATCTTGCGGTTGATCTGCAGTCAGC-
----TCGGTTCCGCCGTAAAACACCTTGTCACGAGCCTGGAGAAGATACGAGATGAGGAGGCGCCACTATCCGAGGTAAC
GTACATTTTGCCCCTCCGATC--CCTGTCTATCCGTCGGT-------TCATTTCTCAGAGAGCAATGCAAAAATGCTGAG
ATTTGCCTCATTGTTTCTGAGCTGTAGGCCTAC---GA------------------------------------------
-------TATGCCCAGTGAGTGGA---------TGCAGGTTCTCTTTCATTTGGTCTCTGGGAAA----ATCAGGCGCGA
TTTACT---TTATTACCGTAGTATTGTCTCTGCAAGGAGCTCCTTCGCTCGTGCGAACAATCACTCGG------CAGCTC
TATCCTCCTCGCACTACTAAACACAC---GGTGAAGAAATCTTCCGCGTTCAGTCTGTGCCACTCTGTGGAGTGCCCACT
C--GTGGGTTCTCC-------------------------CTGTAGTAATGTGGTAGTGTGCACACTGTGCAGGATGCTGG
AGTACATCTACCTTCAGTTATCTCTGTATAC-CTTAGATTCTGTCGCTTAACATATCTTCCGTGTTGGAGAAAGAAAATA
TCTTCTTGTTCTTCTATTTA----TGTATTTCTCCTC---------A-ATTTCTGTGAA---------------------
--------------------------------------------------------------------------------
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---------------
>chr1B_832
--------------------------------------------------------------------------------
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----------------------------ACAGCAATGTCTCT-----AAAACCATACTGGCAACAGTACGCACATCAGCA
-----------GCAGTTCACACAGTTTTGCCCT----TACCTATCC--TCCATATATGCATGCTA---------GCTTGG
CCGGCCACATTTCTTTCACGCAGTTGAAGTAGCAAG-----------------CAG----TAGGTTCTGTGCACTCCTGA
GCCCGA--------AGTCTGCCATGGC------TCGGCTCTACCACCTTACTCTCCTCTCCGTCTTCTTCTTC---CTGC
TCCTCACCAGCCTCGAGGCTGCCGATCAGTCTGGAGAG------------AAGAAGGTGACCATGACCATCCAGTTTCCG
CCTGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCCACCCGA
C---TC----------------------CGACTCCGACGAGCCGTGTGAT------------------------------
-------------------------------------------T------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTAGCTTGATTTG----ATTTCTAGCAAATCTTTCGGTTGATCTGCAGCCAGC-
----TCGGTTCCGCAGTAAAACACCTTGTCAGGAGCCTGGAGAAGATACGAGATGAGGAGGCGTCTCTATCCGAGGTAAC
ATACATTTTGGCCCTCTCCTAGTCCTATCTATCCATCGGT-------TCATATCTCAGAACGCAATGCAAAC-TGCTGAC
ACTTGCCTCATTGTTTCTGAGCTGTAGGCCTAC---GA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGCAGGTCCTCTTTCATTTGGTCTCAGGGAAA----ATTAGGCGCGA
TTTACTAATTTATTATCGTAGTATTATGTCTGCAAGGAGCTCCTTCGCTCGTGCGAACAATCACTCATTGCTGGCAGCTC
TATCCACCTCGCGCTACTAGATCCTGCGGGGTGAAGAAATCTTCCGCGTTCAGTCTGTT----------GAGTGCCCATT
CCCCGGGAGCGTATCAGTTATCAGGGGTCGTTATTCGGGCTGTAGTGATGTGGTAGCCTG--CACTGTGCAGGGTGCTGG
AGTACATCTGCCTTCAGTTATCTCTGTATTAGTTTGGATTCTGTTGCTTAACATATATAC------CGAGAAAGAAAATA
TGTTCTTGTTCTTCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>chr1B_881
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------GTTCACACAAATCTGCTCT----TACCTATCC--TCCATATATGCAT-------------GCTTGG
CCGGCCACATTTCGCTCACGCAGTTGAAGTAGCAACCAGGGCAACCAGGCAACCAG----TAGGTTCTGTGCACTCCTCA
GCCCCA--------AGTCTGCCATGGC------TCGGCTCTACCACCTGACCCTCCTCTCCGTCTTCTTCCTC---CTGA
CCCTCACCGGCCTCGAGGCTGCCGATCCCTCCAGAGAG------------AAGAAGGTGACCATGACCGTCCAGTTCCCG
CCTGCCGACTCGCCGCCGGGGGAGAAGATCACGATCTCAACGCACTACATCGACGAGGACGGGGTGGGCGACAGCCACGT
CCATCTCGACTGCGACGACCATGAGCCGTATGCCTCTCTCTCCCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTC-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCTCTCTCTCTCTCT
C---CCTCTCTCTCTCTCTAACCGACTCCGACTCCGACGAGCCGTGTGAT------------------------------
-------------------------------------------T------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTAGCTTGATTTG----ATTTCTAGCTAATCTTGCGGTTGATCTGCAGCCAGC-
----TTGGTTCCGCCGTAAAACACCTTGTCAGGAGCCTGGAGAAGATACGAGATGAGGAGGCGTCTCTATCCGAGGTAAC
GTACATTTTGGCC---------TCCTATCTATCCGTCGAT-------TCATATCTCAGAACGCAATGCAAAC-TGCTGAC
ATTTGCCTCATTGTTTCTGAGCTGCAGGCCTAC---GA------------------------------------------
-------CATGCCCAGTCAGTGGA---------TGCAGGTCCTCTTTCATTTGGTCTCAGGGAAA----ATCAGGCGCGA
TTTACT---TTATTATCGTAGTATTATGTCTGCAAGGAGCTCCTTCGCTCGTGCCAACAATCACTCGGTGTTGGCAGCTC
TATCCACCTCGTACTACTAGACCCAGGC---TGAAGAAATCTTCCGCGTTCAGTCTGTT----------GAGTGCCCATT
C--CGGGAGCGTATCAGTTATCAGGGGTCGTTATTTAGGTTGTAGTGATGTGGTAGCCTG--CACTGTGCAGGGTGCTGG
AGTACATCTGCCTTCAGTTATCTCTGTATTA-TTTGGATTCTGTAGCTTAACATATCTACCGTGTTCGAGAAAGAAAATA
TGTTCTTGTTCTTCTTTTT-------------------------------------------------------------
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---------------
>SNPs
------S---------------------SSSS---------S---------------S----------------------
-------------S-------S-----------S-SSSSSSSSSSSSSSSSSSSSSS------------S-SS--SSSSS
-SS-SSSSSSSSSSS--S---SSSS-SSSS-SSS--S----SSSSSSSSSSSS-SSSSSSSSSSSSS-SSSSSSS-SSSS
S--SSSS-SSSSS---SSSSSSSSS---S-SS--SS-S-SSS-SSSSS-S-S-SSS-SSSSSSSS---SSSSSSS---S-
----S-S--SS-S--SS---SSSSSSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S------S----S------------------------
--------------------SSSSS-SSSSSSS-SSSSSSSSSSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--------------------------------------------------------------------------------
------------S---------------------------------S--S--------S---------------------
------------------SSS-------SS--------S------------------------S--S-S----------S
------------S----S-S-S------------S---------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------------S------
-------------S----------S---------S---------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-----------------------S-----S------------------------------------------------S-
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
------------------------------------------------------S-----------------------SS
-------------------------------------------------------------------S------------
-----------------------------------------------S---------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
---------------------------S---------S--------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-------S-------SS-----------------S-------------S-----------
S---------------------------------S---------------------------------------------
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--------------------SSSSSSSSS---S-SSSS--S--S-SSSSSSSSSSSS--S-S--S-SSS---S-SS-S-S
-S-SSSS-SSS--SS-SSSSS-S-SSSS-SSSS-S-S-----SS--SS-SS-SSS-SSSSSS-SSSS-SSSSSSS-SS--
S-SS-SS-SSSSSSS--SSSSSSSSSSS-SS-SSSSSSSS--SSSSS-S-SSSS--SSSSSSSSSSSSSSS-SSS-SSS-
SSS-SSS--S--SSS-SSSSSSSSSS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGAGAGGGA
GGACTGGCTTA---------------------------------------------------------------------
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---------------
>reverse_1999
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------------------------------------------------------------------------------TC
GTACATTTTGCCCCTCCC--------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_511
--------------------------------------------------------------------------------
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-----------GCAAGTACTCCCTCCGTTCC-------------------------------------------------
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---------------
>reverse_3708
--------------------------------------------------------------------------------
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---------------------------AAGACGACGGACCAAAAGCA---------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
